Experiment set4IT086 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Doxycycline hyclate 0.0006 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_19295 -4.0 -1.9 hypothetical protein compare
AO353_21445 -3.8 -2.5 cation:proton antiporter compare
AO353_19020 -3.7 -2.0 hypothetical protein compare
AO353_20565 -3.4 -1.4 tRNA-Ala compare
AO353_04810 -3.4 -1.6 hypothetical protein compare
AO353_23790 -3.4 -1.8 metal-binding protein compare
AO353_09275 -3.3 -2.3 DNA-directed RNA polymerase subunit omega compare
AO353_12350 -3.1 -2.1 preprotein translocase compare
AO353_09040 -3.1 -1.7 diaminopimelate epimerase compare
AO353_09030 -3.0 -1.2 iron donor protein CyaY compare
AO353_00975 -2.9 -2.8 hypothetical protein compare
AO353_10985 -2.8 -2.1 hypothetical protein compare
AO353_18715 -2.8 -1.3 histidine kinase compare
AO353_13405 -2.7 -3.1 urease accessory protein UreF compare
AO353_27550 -2.7 -1.0 hypothetical protein compare
AO353_29005 -2.7 -1.8 hypothetical protein compare
AO353_17160 -2.6 -1.6 aspartate-semialdehyde dehydrogenase compare
AO353_22685 -2.6 -1.8 peroxidase compare
AO353_18745 -2.6 -1.6 flagellar biosynthesis protein flip compare
AO353_09315 -2.6 -7.1 LysR family transcriptional regulator compare
AO353_03000 -2.6 -2.8 topoisomerase II compare
AO353_02690 -2.6 -5.2 dehydrogenase compare
AO353_23725 -2.6 -3.5 hypothetical protein compare
AO353_10630 -2.5 -3.0 16S rRNA methyltransferase compare
AO353_03410 -2.5 -1.9 chemotaxis protein CheY compare
AO353_16655 -2.5 -2.8 phage baseplate protein compare
AO353_16495 -2.5 -4.1 zinc metallopeptidase RseP compare
AO353_26595 -2.5 -4.0 copper resistance protein CopD compare
AO353_23730 -2.5 -2.3 hypothetical protein compare
AO353_03515 -2.4 -1.3 cold-shock protein compare
AO353_21465 -2.4 -2.2 cation:proton antiporter compare
AO353_27575 -2.4 -2.3 hypothetical protein compare
AO353_00090 -2.4 -2.8 hypothetical protein compare
AO353_27435 -2.4 -1.3 hypothetical protein compare
AO353_09950 -2.3 -3.5 aspartate ammonia-lyase compare
AO353_07315 -2.3 -2.2 rRNA methyltransferase compare
AO353_15480 -2.3 -1.5 hypothetical protein compare
AO353_17295 -2.2 -15.1 multidrug transporter compare
AO353_17300 -2.2 -4.2 antibiotic transporter compare
AO353_01190 -2.2 -1.2 hypothetical protein compare
AO353_02940 -2.2 -2.8 DNA-binding protein compare
AO353_23735 -2.2 -5.9 AAA family ATPase compare
AO353_20585 -2.1 -2.9 TetR family transcriptional regulator compare
AO353_19530 -2.1 -0.8 quinohemoprotein amine dehydrogenase compare
AO353_25700 -2.1 -2.8 hypothetical protein compare
AO353_21425 -2.1 -2.5 hypothetical protein compare
AO353_09345 -2.1 -1.9 hypothetical protein compare
AO353_19580 -2.1 -3.1 AraC family transcriptional regulator compare
AO353_23715 -2.1 -4.7 hypothetical protein compare
AO353_12055 -2.1 -3.7 cell envelope biogenesis protein AsmA compare
AO353_00265 -2.1 -2.3 hypothetical protein compare
AO353_17290 -2.1 -3.1 multidrug transporter compare
AO353_19015 -2.1 -9.9 hypothetical protein compare
AO353_18630 -2.1 -7.0 beta-ketoacyl-ACP synthase compare
AO353_25260 -2.0 -3.3 hypothetical protein compare
AO353_03590 -2.0 -2.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_23710 -2.0 -4.2 protein BatD compare
AO353_17945 -2.0 -1.2 cyclic nucleotide-binding protein compare
AO353_08775 -2.0 -1.6 cell division protein ZapA compare
AO353_18095 -2.0 -2.7 hypothetical protein compare
AO353_13415 -2.0 -4.0 TetR family transcriptional regulator compare
AO353_08265 -2.0 -2.3 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_15900 -2.0 -1.3 GTP-binding protein compare
AO353_17205 -2.0 -1.8 beta-ketoadipyl CoA thiolase compare
AO353_12115 -2.0 -1.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_04490 -1.9 -5.3 murein transglycosylase compare
AO353_13225 -1.9 -1.3 50S ribosomal protein L9 compare
AO353_03985 -1.9 -3.4 imelysin compare
AO353_05420 -1.9 -1.3 peptide chain release factor 3 compare
AO353_00385 -1.9 -2.9 glycerophosphodiester phosphodiesterase compare
AO353_13720 -1.9 -10.0 arginine decarboxylase compare
AO353_03920 -1.9 -2.6 acetyltransferase compare
AO353_06745 -1.9 -2.2 zinc-binding protein compare
AO353_16350 -1.9 -2.6 SAM-dependent methyltransferase compare
AO353_00495 -1.9 -1.3 DNA topoisomerase I compare
AO353_27010 -1.9 -2.6 alpha-ketoglutarate-dependent dioxygenase compare
AO353_01265 -1.9 -3.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO353_05145 -1.9 -2.8 ABC transporter permease compare
AO353_24340 -1.9 -1.2 TetR family transcriptional regulator compare
AO353_00825 -1.9 -1.8 porin compare
AO353_25815 -1.9 -3.3 hypothetical protein compare
AO353_07735 -1.9 -4.3 AraC family transcriptional regulator compare
AO353_08120 -1.9 -2.5 hypothetical protein compare
AO353_25990 -1.8 -3.8 aspartyl beta-hydroxylase compare
AO353_05130 -1.8 -1.0 anti-anti-sigma factor compare
AO353_23155 -1.8 -2.8 IclR family transcriptional regulator compare
AO353_16915 -1.8 -6.8 hypothetical protein compare
AO353_16345 -1.8 -1.7 energy transducer TonB compare
AO353_07925 -1.8 -6.7 beta-hydroxylase compare
AO353_05140 -1.8 -2.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_15490 -1.8 -1.6 hypothetical protein compare
AO353_08885 -1.8 -10.7 polyphosphate kinase compare
AO353_04565 -1.8 -2.7 nucleoid-associated protein compare
AO353_15905 -1.8 -1.2 outer membrane protein assembly factor BamB compare
AO353_08130 -1.8 -1.2 uracil phosphoribosyltransferase compare
AO353_05150 -1.8 -2.1 ABC transporter ATP-binding protein compare
AO353_01685 -1.8 -1.3 hypothetical protein compare
AO353_20535 -1.7 -2.7 hypothetical protein compare
AO353_18170 -1.7 -6.1 aspartyl beta-hydroxylase compare
AO353_08570 -1.7 -6.6 transporter compare
AO353_03035 -1.7 -3.4 AraC family transcriptional regulator compare
AO353_20170 -1.7 -1.7 trigger factor compare
AO353_09135 -1.7 -1.6 cytochrome C compare
AO353_05135 -1.7 -5.4 toluene tolerance protein compare
AO353_23720 -1.7 -3.0 BatB protein compare
AO353_00820 -1.7 -4.7 uroporphyrin-III methyltransferase compare
AO353_09050 -1.7 -2.5 recombinase XerC compare
AO353_14485 -1.7 -1.1 pseudouridine synthase compare
AO353_18780 -1.7 -4.1 cobyrinic acid a,c-diamide synthase compare
AO353_12990 -1.7 -3.1 multidrug DMT transporter compare
AO353_08060 -1.7 -2.7 hypothetical protein compare
AO353_00330 -1.7 -5.2 hypothetical protein compare
AO353_02440 -1.7 -6.9 peptidase S41 compare
AO353_08350 -1.7 -4.4 hypothetical protein compare
AO353_16155 -1.7 -1.9 antibiotic biosynthesis monooxygenase compare
AO353_03595 -1.6 -2.7 hypothetical protein compare
AO353_08645 -1.6 -1.5 transporter compare
AO353_02020 -1.6 -3.2 hypothetical protein compare
AO353_20270 -1.6 -2.5 spore coat protein compare
AO353_12500 -1.6 -1.1 shikimate kinase compare
AO353_06550 -1.6 -6.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO353_03670 -1.6 -3.1 ornithine acetyltransferase compare
AO353_09320 -1.6 -5.6 ATP-dependent DNA helicase RecG compare
AO353_05735 -1.6 -9.7 hypothetical protein compare
AO353_00310 -1.6 -5.9 transaldolase compare
AO353_06585 -1.6 -5.3 hypothetical protein compare
AO353_13040 -1.6 -5.1 esterase conserved
AO353_03760 -1.6 -2.8 pilus assembly protein PilZ compare
AO353_04230 -1.6 -2.9 chemotaxis protein CheW compare
AO353_27245 -1.5 -3.5 lysozyme compare
AO353_25505 -1.5 -5.9 4-amino-4-deoxy-L-arabinose transferase compare
AO353_12690 -1.5 -0.6 acyl carrier protein compare
AO353_22585 -1.5 -4.8 HxlR family transcriptional regulator compare
AO353_21495 -1.5 -2.5 short-chain dehydrogenase compare
AO353_26835 -1.5 -2.2 transcriptional regulator compare
AO353_25570 -1.5 -6.1 glycosyltransferase compare
AO353_28485 -1.5 -2.0 LysR family transcriptional regulator compare
AO353_15285 -1.5 -6.9 hypothetical protein compare
AO353_19090 -1.5 -1.0 MarR family transcriptional regulator compare
AO353_27090 -1.5 -1.3 hypothetical protein compare
AO353_25660 -1.5 -2.9 ABC transporter substrate-binding protein compare
AO353_10995 -1.5 -6.8 hypothetical protein compare
AO353_13085 -1.5 -2.9 histidine kinase compare
AO353_26045 -1.5 -1.7 hypothetical protein compare
AO353_18120 -1.5 -1.7 hypothetical protein compare
AO353_19205 -1.5 -2.1 hypothetical protein compare
AO353_11720 -1.4 -2.4 taurine transporter ATP-binding subunit compare
AO353_12940 -1.4 -4.5 glycosyl transferase compare
AO353_21775 -1.4 -2.9 transporter compare
AO353_27925 -1.4 -1.5 hypothetical protein compare
AO353_12935 -1.4 -1.9 glycosyltransferase compare
AO353_02280 -1.4 -1.2 DNA mismatch repair protein MutS compare
AO353_03545 -1.4 -5.5 hypothetical protein compare
AO353_06795 -1.4 -1.1 Isochorismatase compare
AO353_12790 -1.4 -1.5 hypothetical protein compare
AO353_01435 -1.4 -1.9 protein tyrosine phosphatase compare
AO353_14775 -1.4 -3.2 hypothetical protein compare
AO353_12575 -1.4 -2.3 type II secretion system protein GspJ compare
AO353_06040 -1.4 -2.3 exodeoxyribonuclease V subunit alpha compare
AO353_26215 -1.4 -2.9 hypothetical protein compare
AO353_11915 -1.4 -4.7 agmatine deiminase compare
AO353_14560 -1.4 -9.4 mammalian cell entry protein conserved
AO353_05100 -1.4 -4.0 nickel ABC transporter substrate-binding protein compare
AO353_12100 -1.4 -5.0 polysaccharide deacetylase compare
AO353_00860 -1.4 -2.7 EstX protein compare
AO353_13200 -1.4 -5.8 exoribonuclease R compare
AO353_26945 -1.4 -1.2 transcriptional regulator compare
AO353_02815 -1.4 -3.4 transcriptional regulator compare
AO353_08725 -1.4 -4.5 aminotransferase DegT compare
AO353_14300 -1.4 -4.8 hypothetical protein compare
AO353_13580 -1.4 -2.3 copper resistance protein CopZ compare
AO353_12015 -1.4 -1.7 antitoxin compare
AO353_06775 -1.4 -3.9 dTDP-4-dehydrorhamnose reductase compare
AO353_04365 -1.4 -3.7 recombinase XerD compare
AO353_22820 -1.3 -8.2 NAD-glutamate dehydrogenase compare
AO353_02465 -1.3 -1.0 hypothetical protein compare
AO353_12345 -1.3 -0.9 twin-arginine protein translocation system subunit TatC compare
AO353_25550 -1.3 -3.9 4-amino-4-deoxy-L-arabinose transferase compare
AO353_23910 -1.3 -1.7 response regulator compare
AO353_03360 -1.3 -4.7 glucose-6-phosphate dehydrogenase compare
AO353_12915 -1.3 -4.2 carbamoyltransferase compare
AO353_07725 -1.3 -5.2 hypothetical protein compare
AO353_18765 -1.3 -2.3 hypothetical protein compare
AO353_02720 -1.3 -3.3 cysteine synthase compare
AO353_15290 -1.3 -5.1 methyltransferase compare
AO353_06100 -1.3 -1.3 thymidylate synthase compare
AO353_27695 -1.3 -4.5 isocitrate dehydrogenase compare
AO353_21330 -1.3 -5.6 RpiR family transcriptional regulator compare
AO353_06310 -1.3 -2.8 ferrous iron transporter compare
AO353_14740 -1.3 -0.9 GTP-binding protein compare
AO353_06865 -1.3 -8.3 catalase compare
AO353_12105 -1.3 -3.0 peptidase S41 compare
AO353_23265 -1.3 -3.0 chromate resistance protein compare
AO353_03775 -1.3 -4.9 pyruvate kinase compare
AO353_10070 -1.3 -5.8 cell wall assembly protein compare
AO353_13390 -1.3 -4.9 N-acylglucosamine 2-epimerase compare
AO353_01215 -1.3 -5.4 hypothetical protein compare
AO353_21750 -1.3 -1.8 peptidylprolyl isomerase compare
AO353_19030 -1.3 -3.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_26070 -1.3 -1.9 hypothetical protein compare


Specific Phenotypes

For 23 genes in this experiment

For stress Doxycycline hyclate in Pseudomonas fluorescens FW300-N2E3

For stress Doxycycline hyclate across organisms