Experiment set4IT086 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Doxycycline hyclate 0.0006 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO353_17395 +8.7 39.3 methyltransferase conserved
AO353_17305 +8.4 14.4 TetR family transcriptional regulator compare
AO353_07140 +6.9 47.0 peptidase M23 compare
AO353_26830 +5.1 14.9 histidine kinase compare
AO353_15785 +4.9 23.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_05195 +4.7 28.5 glmZ(sRNA)-inactivating NTPase compare
AO353_07145 +4.6 29.1 anhydro-N-acetylmuramic acid kinase compare
AO353_02660 +4.6 13.2 peptidase P60 compare
AO353_00455 +4.6 12.1 beta-hexosaminidase compare
AO353_08895 +4.5 8.8 hypothetical protein compare
AO353_16925 +4.2 32.1 AmpG family muropeptide MFS transporter compare
AO353_19825 +4.1 23.3 shikimate dehydrogenase compare
AO353_01355 +4.1 20.9 3-oxoacyl-ACP synthase compare
AO353_07290 +3.9 23.3 mannose-1-phosphate guanylyltransferase compare
AO353_01405 +3.9 15.1 23S rRNA pseudouridylate synthase compare
AO353_07295 +3.9 30.0 aminoglycoside phosphotransferase compare
AO353_02100 +3.9 10.4 phosphoglycolate phosphatase compare
AO353_27720 +3.8 9.4 cupin compare
AO353_18540 +3.7 8.2 pseudouridine synthase compare
AO353_18435 +3.6 11.8 MarR family transcriptional regulator compare
AO353_02005 +3.5 2.7 hypothetical protein compare
AO353_13420 +3.4 2.5 hypothetical protein compare
AO353_02000 +3.3 7.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_23385 +3.2 13.0 trans-2-enoyl-CoA reductase compare
AO353_02030 +3.1 4.0 hypothetical protein compare
AO353_13140 +3.0 8.5 tRNA dimethylallyltransferase compare
AO353_05240 +2.9 6.6 rod shape-determining protein MreD compare
AO353_03115 +2.9 4.8 TetR family transcriptional regulator compare
AO353_11775 +2.9 11.8 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_04185 +2.7 12.0 DeoR family transcriptional regulator compare
AO353_05510 +2.5 10.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_01980 +2.5 10.7 NAD-dependent dehydratase compare
AO353_02010 +2.4 6.3 glycosyl transferase family 1 compare
AO353_02025 +2.4 9.1 mannose-1-phosphate guanyltransferase compare
AO353_23485 +2.4 11.5 lytic transglycosylase compare
AO353_28700 +2.2 3.3 hypothetical protein compare
AO353_02015 +2.1 5.2 acetyltransferase compare
AO353_15885 +2.1 5.1 Cro/Cl family transcriptional regulator compare
AO353_02175 +2.0 3.7 carbon storage regulator compare
AO353_00510 +2.0 6.3 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_10455 +2.0 2.5 tRNA modification GTPase MnmE compare
AO353_06850 +2.0 5.6 MFS transporter compare
AO353_15875 +1.9 4.7 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_09835 +1.9 3.0 rubredoxin compare
AO353_09660 +1.9 3.5 hypothetical protein compare
AO353_24665 +1.9 8.0 phosphoglucomutase conserved
AO353_01205 +1.8 9.5 translation initiation factor 2 compare
AO353_13100 +1.8 2.7 GTPase RsgA compare
AO353_14220 +1.8 2.3 ribosomal large subunit pseudouridine synthase D compare
AO353_00905 +1.8 3.8 GntR family transcriptional regulator compare
AO353_05535 +1.8 5.0 tRNA-Thr compare
AO353_04325 +1.8 2.2 hypothetical protein compare
AO353_27415 +1.7 2.5 hypothetical protein compare
AO353_08880 +1.7 3.1 exopolyphosphatase compare
AO353_17250 +1.7 3.9 nitrile hydratase compare
AO353_22520 +1.7 2.6 hypothetical protein compare
AO353_00115 +1.6 2.4 hypothetical protein compare
AO353_08195 +1.6 3.8 non-canonical purine NTP pyrophosphatase compare
AO353_07935 +1.6 4.7 hypothetical protein compare
AO353_00505 +1.6 4.4 3-ketoacyl-CoA thiolase compare
AO353_28320 +1.6 3.4 aminopeptidase compare
AO353_13095 +1.5 3.6 flagellar motor protein MotB compare
AO353_10270 +1.5 6.7 glycosyl transferase compare
AO353_13135 +1.5 6.8 DNA mismatch repair protein compare
AO353_13115 +1.5 8.8 epoxyqueuosine reductase compare
AO353_14030 +1.5 9.4 ABC transporter ATP-binding protein compare
AO353_12135 +1.5 4.1 rRNA methylase compare
AO353_16040 +1.5 2.1 hypothetical protein compare
AO353_11525 +1.4 5.7 aminotransferase compare
AO353_00105 +1.4 1.5 hypothetical protein compare
AO353_13505 +1.4 3.4 acetyltransferase compare
AO353_19290 +1.4 2.5 molybdenum cofactor sulfurase compare
AO353_15670 +1.4 4.9 histidine kinase compare
AO353_05225 +1.4 9.7 hypothetical protein compare
AO353_14840 +1.4 5.2 NAD-dependent dehydratase compare
AO353_16810 +1.4 3.5 recombinase RecX compare
AO353_12245 +1.4 2.6 hypothetical protein compare
AO353_28680 +1.4 2.9 transposase compare
AO353_19750 +1.4 2.2 diaminopimelate epimerase compare
AO353_08520 +1.4 8.7 cysteine ABC transporter substrate-binding protein compare
AO353_09440 +1.4 1.3 type VI secretion protein compare
AO353_14990 +1.3 1.7 hypothetical protein compare
AO353_15730 +1.3 3.0 hypothetical protein compare
AO353_03020 +1.3 4.9 arginine N-succinyltransferase compare
AO353_18840 +1.3 5.1 flagellar biosynthesis protein FlhB compare
AO353_05675 +1.3 5.0 protein RnfH conserved
AO353_18305 +1.3 3.0 RNA helicase compare
AO353_12420 +1.3 3.7 predicted FeS cluster maintenance protein (from data) compare
AO353_02040 +1.3 1.5 integration host factor subunit beta compare
AO353_01345 +1.3 8.4 aminodeoxychorismate lyase compare
AO353_17365 +1.3 2.9 hypothetical protein compare
AO353_27000 +1.3 2.0 hypothetical protein compare
AO353_15410 +1.3 2.5 hypothetical protein compare
AO353_07445 +1.3 0.7 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_01015 +1.2 1.7 hypothetical protein compare
AO353_08200 +1.2 4.7 coproporphyrinogen III oxidase compare
AO353_20410 +1.2 2.2 hypothetical protein compare
AO353_00955 +1.2 2.5 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_17650 +1.2 2.4 response regulator SirA compare
AO353_06365 +1.2 6.4 hypothetical protein compare
AO353_01995 +1.2 6.1 hypothetical protein compare
AO353_12060 +1.2 3.5 acetyltransferase compare
AO353_25955 +1.2 2.9 NIPSNAP family containing protein compare
AO353_10440 +1.2 3.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_24980 +1.2 3.9 formate dehydrogenase accessory protein FdhE compare
AO353_10780 +1.2 1.1 DNA-binding protein compare
AO353_14585 +1.2 3.8 ribosomal-protein-alanine acetyltransferase compare
AO353_03830 +1.2 1.5 antibiotic biosynthesis monooxygenase compare
AO353_20860 +1.2 2.3 hypothetical protein compare
AO353_12650 +1.2 1.2 hypothetical protein compare
AO353_01485 +1.2 4.9 ABC transporter compare
AO353_27365 +1.2 2.7 hypothetical protein compare
AO353_02330 +1.2 2.3 allantoicase compare
AO353_05490 +1.2 4.2 transcriptional regulator compare
AO353_05280 +1.2 1.3 4-carboxymuconolactone decarboxylase compare
AO353_10990 +1.2 5.8 glutamate:protein symporter compare
AO353_00120 +1.2 2.3 DNA-binding protein compare
AO353_07610 +1.1 0.9 hypothetical protein compare
AO353_23490 +1.1 5.6 hydroxyacylglutathione hydrolase compare
AO353_05425 +1.1 3.1 glycine/betaine ABC transporter permease compare
AO353_20870 +1.1 3.5 hypothetical protein compare
AO353_07410 +1.1 4.6 lipopolysaccharide biosynthesis protein compare
AO353_02640 +1.1 1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_16415 +1.1 5.9 beta-(1-3)-glucosyl transferase compare
AO353_08465 +1.1 7.2 phosphoenolpyruvate-protein phosphotransferase compare
AO353_28665 +1.1 2.5 hypothetical protein compare
AO353_19435 +1.1 2.1 TetR family transcriptional regulator compare
AO353_27255 +1.1 2.2 late control protein compare
AO353_14930 +1.1 1.7 GntR family transcriptional regulator compare
AO353_15830 +1.1 0.9 transcriptional regulator compare
AO353_03015 +1.1 3.7 arginine N-succinyltransferase compare
AO353_19505 +1.1 2.3 FAD-dependent oxidoreductase compare
AO353_00435 +1.1 7.5 transcription-repair coupling factor compare
AO353_26840 +1.1 0.8 RND transporter compare
AO353_12310 +1.1 5.7 glucan biosynthesis protein G compare
AO353_15170 +1.1 1.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_09840 +1.1 3.2 chorismate--pyruvate lyase compare
AO353_08910 +1.1 1.1 hypothetical protein compare
AO353_10725 +1.1 1.1 dodecin flavoprotein compare
AO353_21110 +1.1 1.8 hypothetical protein compare
AO353_08395 +1.1 3.2 FAD-dependent oxidoreductase compare
AO353_15665 +1.1 2.5 chemotaxis protein CheY compare
AO353_00190 +1.1 3.8 phage tail protein compare
AO353_08050 +1.1 2.4 16S rRNA methyltransferase compare
AO353_22735 +1.1 1.9 hypothetical protein compare
AO353_00345 +1.1 2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_24275 +1.1 1.1 transcriptional regulator compare
AO353_02655 +1.1 3.3 peptidase P60 compare
AO353_11780 +1.1 1.9 hypothetical protein compare
AO353_25835 +1.1 3.7 6-phosphogluconate dehydrogenase compare
AO353_15385 +1.1 1.0 hypothetical protein compare
AO353_01020 +1.1 1.9 hypothetical protein compare
AO353_20215 +1.1 4.6 carbon-nitrogen hydrolase compare
AO353_04180 +1.0 5.5 glycerol kinase compare
AO353_22780 +1.0 3.0 phosphoglycerate mutase compare
AO353_23700 +1.0 3.3 hypothetical protein compare
AO353_26670 +1.0 2.5 ArsR family transcriptional regulator compare
AO353_01765 +1.0 3.4 peroxiredoxin compare
AO353_00170 +1.0 1.8 lysozyme compare
AO353_22280 +1.0 1.6 hypothetical protein compare
AO353_02045 +1.0 2.8 hypothetical protein compare
AO353_07235 +1.0 4.4 phosphoglycolate phosphatase compare
AO353_12580 +1.0 1.8 type II secretory protein PulK compare
AO353_16745 +1.0 1.7 ArsR family transcriptional regulator compare
AO353_01780 +1.0 5.1 heat-shock protein Hsp90 compare
AO353_17850 +1.0 1.2 SAM-dependent methyltransferase compare
AO353_04055 +1.0 1.1 methionine--tRNA ligase compare
AO353_20810 +1.0 1.5 hypothetical protein compare
AO353_13300 +1.0 1.9 LOG family protein compare
AO353_26900 +1.0 2.4 glycerate kinase compare
AO353_13160 +1.0 1.4 membrane protease HflC compare
AO353_21245 +1.0 2.8 hypothetical protein compare
AO353_03605 +1.0 0.8 FmdB family transcriptional regulator compare
AO353_12045 +1.0 3.0 iron transporter compare
AO353_23160 +1.0 2.9 hydrolase compare
AO353_22785 +1.0 2.9 peptidase compare
AO353_27410 +1.0 1.2 hypothetical protein compare
AO353_06465 +1.0 3.5 lytic transglycosylase compare
AO353_11060 +1.0 2.6 holliday junction resolvasome, helicase subunit compare
AO353_23880 +1.0 2.6 ATPase compare
AO353_22660 +1.0 3.0 hypothetical protein compare
AO353_11565 +1.0 4.3 Crp/Fnr family transcriptional regulator compare
AO353_18090 +1.0 3.3 cytochrome C552 compare
AO353_16855 +1.0 2.6 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
AO353_04060 +1.0 3.7 NADH:quinone oxidoreductase compare
AO353_03510 +1.0 1.3 glycine cleavage system protein T compare
AO353_27445 +1.0 2.4 hypothetical protein compare
AO353_28490 +1.0 2.6 MFS transporter compare
AO353_08590 +1.0 4.9 glutamine synthetase compare
AO353_04090 +1.0 1.2 leucyl-tRNA synthetase compare
AO353_17975 +0.9 3.9 arabinose ABC transporter permease compare
AO353_17965 +0.9 1.7 hypothetical protein compare
AO353_16740 +0.9 2.0 phage tail protein compare
AO353_28330 +0.9 2.9 carbon-nitrogen hydrolase compare
AO353_18945 +0.9 3.2 hypothetical protein compare
AO353_06720 +0.9 1.4 NrdR family transcriptional regulator compare
AO353_05740 +0.9 1.9 hypothetical protein compare
AO353_02645 +0.9 2.5 hypothetical protein compare
AO353_18135 +0.9 1.5 hypothetical protein compare
AO353_20130 +0.9 3.4 hypothetical protein compare


Specific Phenotypes

For 23 genes in this experiment

For stress Doxycycline hyclate in Pseudomonas fluorescens FW300-N2E3

For stress Doxycycline hyclate across organisms