Experiment set4IT086 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Sodium butyrate carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.0 -4.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.6 -11.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5666 -3.6 -3.4 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1307 -3.5 -2.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1534 -3.4 -17.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1067 -3.3 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_15 -3.3 -3.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1831 -3.1 -9.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1624 -3.1 -8.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1408 -3.0 -4.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4042 -3.0 -4.0 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_2545 -3.0 -12.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2549 -3.0 -8.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2384 -2.9 -11.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1533 -2.9 -6.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3812 -2.9 -9.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2303 -2.9 -13.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_12 -2.9 -5.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2496 -2.8 -13.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) conserved
Pf1N1B4_3697 -2.8 -9.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1627 -2.8 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_742 -2.7 -6.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1830 -2.7 -9.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1565 -2.7 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2548 -2.7 -6.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_350 -2.6 -7.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1626 -2.6 -7.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5665 -2.6 -5.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2338 -2.6 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2854 -2.6 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_762 -2.6 -5.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2225 -2.5 -10.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_4065 -2.4 -7.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2009 -2.4 -3.6 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_847 -2.4 -8.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_58 -2.4 -6.7 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2010 -2.4 -6.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1315 -2.3 -7.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1617 -2.3 -7.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2878 -2.3 -8.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2208 -2.3 -7.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_327 -2.2 -2.0 hypothetical protein compare
Pf1N1B4_4870 -2.2 -3.2 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_2272 -2.1 -3.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2939 -2.1 -6.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2337 -2.1 -5.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2879 -2.1 -6.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1434 -2.1 -6.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1625 -2.1 -5.9 FIG00956267: hypothetical protein compare
Pf1N1B4_4481 -2.0 -3.4 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_3081 -2.0 -16.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_652 -2.0 -9.9 Sensory box histidine kinase compare
Pf1N1B4_2011 -2.0 -6.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2478 -2.0 -7.5 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_952 -2.0 -2.9 Cell division protein MraZ compare
Pf1N1B4_2526 -1.9 -12.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4038 -1.9 -3.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2682 -1.9 -2.3 Antiholin-like protein LrgA compare
Pf1N1B4_3506 -1.8 -6.6 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5133 -1.8 -3.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_1906 -1.8 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2282 -1.8 -7.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3833 -1.7 -7.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1545 -1.7 -8.4 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_1837 -1.7 -2.6 Osmotically inducible protein C compare
Pf1N1B4_5720 -1.7 -2.8 hypothetical protein compare
Pf1N1B4_4678 -1.6 -4.2 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_1566 -1.6 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4299 -1.5 -3.1 sensor histidine kinase compare
Pf1N1B4_3692 -1.5 -2.9 Chaperone protein HtpG compare
Pf1N1B4_3917 -1.5 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_5135 -1.4 -3.8 Transcriptional regulator, TetR family compare
Pf1N1B4_3038 -1.4 -3.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2487 -1.3 -6.4 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2004 -1.3 -2.0 putative membrane protein compare
Pf1N1B4_2493 -1.3 -2.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_1317 -1.3 -2.7 Sensor histidine kinase/response regulator compare
Pf1N1B4_1234 -1.3 -3.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4212 -1.3 -2.3 Gfa-like protein compare
Pf1N1B4_5745 -1.2 -2.7 FIG139928: Putative protease compare
Pf1N1B4_2421 -1.2 -2.6 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_1057 -1.2 -1.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1194 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_4516 -1.2 -2.4 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_2850 -1.2 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2683 -1.2 -3.8 LrgA-associated membrane protein LrgB compare
Pf1N1B4_2853 -1.1 -1.7 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_2706 -1.1 -2.2 FIG00954871: hypothetical protein compare
Pf1N1B4_2957 -1.1 -6.0 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_2377 -1.1 -4.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1749 -1.1 -1.3 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_617 -1.1 -1.6 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_1668 -1.1 -3.5 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_5014 -1.1 -1.9 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_4195 -1.1 -3.1 Transcriptional regulator, TetR family compare
Pf1N1B4_2547 -1.1 -2.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_855 -1.1 -2.2 FIG021952: putative membrane protein compare
Pf1N1B4_3466 -1.1 -2.3 FIG00955605: hypothetical protein compare
Pf1N1B4_4368 -1.1 -2.1 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2280 -1.0 -5.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_219 -1.0 -2.9 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_1653 -1.0 -4.6 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2873 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_4028 -1.0 -2.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1153 -1.0 -2.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_3484 -1.0 -3.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_758 -1.0 -2.7 Bacterioferritin compare
Pf1N1B4_606 -1.0 -1.6 Iron siderophore sensor protein compare
Pf1N1B4_3142 -1.0 -3.0 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS compare
Pf1N1B4_1806 -1.0 -2.8 FIG00953743: hypothetical protein compare
Pf1N1B4_1561 -1.0 -1.9 FIG00954300: hypothetical protein compare
Pf1N1B4_4833 -1.0 -2.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2734 -1.0 -1.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2877 -1.0 -4.2 Glycosyltransferase compare
Pf1N1B4_22 -1.0 -4.0 Transcriptional regulator, TetR family compare
Pf1N1B4_3370 -1.0 -3.1 ATPase associated with various cellular activities, AAA_5 compare
Pf1N1B4_4436 -1.0 -1.7 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_4486 -1.0 -2.1 Outer membrane protein (porin) compare
Pf1N1B4_257 -1.0 -4.0 sensor histidine kinase/response regulator compare
Pf1N1B4_2527 -1.0 -6.2 ApaG protein compare
Pf1N1B4_2940 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_2739 -0.9 -0.9 acetyltransferase, GNAT family compare
Pf1N1B4_2917 -0.9 -4.7 FIG140336: TPR domain protein compare
Pf1N1B4_578 -0.9 -2.3 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4437 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_275 -0.9 -1.4 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_4931 -0.9 -1.4 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_814 -0.9 -1.8 Transcriptional regulator, PadR family compare
Pf1N1B4_5507 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_2488 -0.9 -4.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_3849 -0.9 -2.6 Transcriptional regulator, GntR family compare
Pf1N1B4_335 -0.9 -5.9 Glycosyltransferase compare
Pf1N1B4_3328 -0.9 -1.6 Rhodanese-like domain protein compare
Pf1N1B4_3168 -0.9 -2.0 AmpG permease compare
Pf1N1B4_4939 -0.9 -2.2 sodium/hydrogen exchanger family protein compare
Pf1N1B4_3993 -0.9 -2.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_4140 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_384 -0.9 -1.3 proteinase inhibitor compare
Pf1N1B4_2163 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_4509 -0.9 -1.5 Aldose 1-epimerase compare
Pf1N1B4_2490 -0.9 -3.3 Biotin synthesis protein BioC compare
Pf1N1B4_5618 -0.9 -2.1 Excinuclease ABC subunit C compare
Pf1N1B4_373 -0.9 -2.2 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_3906 -0.9 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_740 -0.9 -1.6 Leucyl-tRNA synthetase compare
Pf1N1B4_2491 -0.9 -2.3 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_967 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_1113 -0.9 -3.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1742 -0.9 -2.5 Biofilm PGA synthesis auxiliary protein PgaD compare
Pf1N1B4_3279 -0.9 -2.2 putative membrane protein compare
Pf1N1B4_2273 -0.9 -3.2 hypothetical protein compare
Pf1N1B4_1236 -0.8 -3.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2401 -0.8 -1.8 Lipoprotein, putative compare
Pf1N1B4_348 -0.8 -2.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_3386 -0.8 -2.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_2912 -0.8 -1.3 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1443 -0.8 -2.8 FIG074102: hypothetical protein compare
Pf1N1B4_1544 -0.8 -4.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_255 -0.8 -3.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_1059 -0.8 -1.9 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_2707 -0.8 -2.3 Putative membrane protein compare
Pf1N1B4_2554 -0.8 -3.2 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf1N1B4_5991 -0.8 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_1568 -0.8 -2.4 Twin-arginine translocation protein TatB compare
Pf1N1B4_2348 -0.8 -3.6 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf1N1B4_336 -0.8 -6.0 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_2283 -0.8 -1.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4585 -0.8 -1.5 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_2695 -0.8 -1.3 Rare lipoprotein A precursor compare
Pf1N1B4_4301 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_3369 -0.8 -4.9 Thioredoxin reductase (EC 1.8.1.9) compare
Pf1N1B4_1619 -0.8 -4.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2885 -0.8 -3.2 Paraquat-inducible protein A compare
Pf1N1B4_5274 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_4462 -0.8 -1.5 LysR family transcriptional regulator YbhD compare
Pf1N1B4_5834 -0.8 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_6036 -0.8 -1.7 FIG00953132: hypothetical protein compare
Pf1N1B4_420 -0.8 -3.7 Putative deoxyribonuclease YcfH compare
Pf1N1B4_204 -0.8 -2.6 FIG006220: Hypothetical MbtH-like protein compare
Pf1N1B4_3518 -0.8 -1.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_770 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_683 -0.8 -2.6 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_231 -0.8 -2.7 Sensor histidine kinase compare
Pf1N1B4_4802 -0.8 -1.2 polysaccharide deacetylase compare
Pf1N1B4_2048 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_2297 -0.8 -2.4 FIG00954147: hypothetical protein compare
Pf1N1B4_507 -0.8 -1.2 FIG00956448: hypothetical protein compare
Pf1N1B4_5777 -0.7 -1.4 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_2096 -0.7 -1.5 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_2140 -0.7 -1.4 FIG00957579: hypothetical protein compare
Pf1N1B4_5357 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_2874 -0.7 -1.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5906 -0.7 -2.0 Esterase/lipase compare
Pf1N1B4_3011 -0.7 -1.3 Tyrosine recombinase XerD compare
Pf1N1B4_623 -0.7 -1.2 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_2856 -0.7 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1683 -0.7 -1.4 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_2924 -0.7 -1.8 FIG00955589: hypothetical protein compare
Pf1N1B4_4824 -0.7 -1.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_448 -0.7 -1.1 Aminodeoxychorismate lyase (EC 4.1.3.38) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium butyrate in Pseudomonas fluorescens FW300-N1B4

For carbon source Sodium butyrate across organisms