Experiment set4IT086 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_0.41_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_00940 -4.5 -1.5 hypothetical protein compare
CSW01_00560 -4.4 -5.2 DNA polymerase I compare
CSW01_11555 -4.3 -2.9 riboflavin synthase compare
CSW01_18350 -4.1 -1.9 cell division protein DedD compare
CSW01_14680 -4.1 -0.9 aminotransferase compare
CSW01_13285 -4.0 -2.8 ribulose-phosphate 3-epimerase compare
CSW01_12365 -4.0 -2.8 inorganic phosphate transporter compare
CSW01_01485 -4.0 -5.5 transcriptional regulator compare
CSW01_11560 -3.9 -3.8 riboflavin biosynthesis protein RibD compare
CSW01_18635 -3.8 -5.8 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_06585 -3.8 -2.2 fumarate hydratase compare
CSW01_12005 -3.7 -2.5 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_00015 -3.6 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_03210 -3.5 -16.3 iron ABC transporter permease compare
CSW01_17595 -3.5 -1.1 TIGR02808 family protein compare
CSW01_09525 -3.3 -1.8 DNA translocase FtsK compare
CSW01_10260 -3.3 -4.2 thiol:disulfide interchange protein DsbE compare
CSW01_03205 -3.2 -8.3 iron ABC transporter substrate-binding protein compare
CSW01_04820 -3.2 -11.7 serine hydroxymethyltransferase compare
CSW01_03215 -3.2 -14.0 ABC transporter ATP-binding protein compare
CSW01_09220 -3.1 -1.4 cyd operon protein YbgE compare
CSW01_03980 -3.0 -9.2 IMP dehydrogenase compare
CSW01_14055 -2.9 -6.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_06380 -2.9 -3.5 GTP cyclohydrolase II compare
CSW01_00450 -2.9 -2.4 SCP2 domain-containing protein compare
CSW01_08935 -2.9 -2.2 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_13805 -2.8 -6.6 Hsp33 family molecular chaperone HslO compare
CSW01_03325 -2.7 -4.1 porin compare
CSW01_05575 -2.7 -3.7 phosphate acetyltransferase compare
CSW01_11730 -2.7 -3.6 2-dehydropantoate 2-reductase compare
CSW01_01920 -2.6 -1.9 bacterioferritin compare
CSW01_16195 -2.6 -1.0 DUF645 domain-containing protein compare
CSW01_13420 -2.5 -3.1 elongation factor P--(R)-beta-lysine ligase compare
CSW01_16130 -2.5 -1.0 acetyltransferase compare
CSW01_03790 -2.5 -4.7 phosphate ABC transporter, permease protein PstA compare
CSW01_02875 -2.4 -6.1 DNA recombination/repair protein RecA compare
CSW01_11780 -2.4 -4.3 exodeoxyribonuclease V subunit beta compare
CSW01_10280 -2.3 -5.3 heme exporter protein C compare
CSW01_01875 -2.3 -2.3 hypothetical protein compare
CSW01_17885 -2.3 -2.0 hypothetical protein compare
CSW01_10875 -2.2 -5.7 redox-regulated ATPase YchF compare
CSW01_01140 -2.2 -2.1 lipid A biosynthesis lauroyl acyltransferase compare
CSW01_12735 -2.2 -4.7 RidA family protein compare
CSW01_00500 -2.2 -14.3 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_13450 -2.2 -4.2 EF-P beta-lysylation protein EpmB compare
CSW01_10290 -2.2 -4.4 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_10265 -2.1 -6.5 c-type cytochrome biogenesis protein CcmF compare
CSW01_00460 -2.1 -3.4 twin-arginine translocase subunit TatA compare
CSW01_03410 -2.1 -2.6 polyribonucleotide nucleotidyltransferase compare
CSW01_12885 -2.1 -7.2 fructose 1,6-bisphosphatase compare
CSW01_13635 -2.0 -9.1 thiol:disulfide interchange protein DsbD compare
CSW01_12680 -2.0 -5.9 cytosol aminopeptidase compare
CSW01_05580 -2.0 -6.5 acetate kinase compare
CSW01_07475 -2.0 -1.4 glutaredoxin family protein compare
CSW01_11215 -2.0 -4.7 flagellar hook assembly protein FlgD compare
CSW01_12320 -2.0 -3.9 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_13305 -2.0 -2.1 shikimate kinase compare
CSW01_17325 -2.0 -6.3 transaldolase compare
CSW01_11670 -1.9 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_10745 -1.9 -1.9 DUF2897 domain-containing protein compare
CSW01_02490 -1.9 -7.0 glutathione synthetase compare
CSW01_17750 -1.8 -1.0 cytochrome B compare
CSW01_07150 -1.8 -2.0 spermidine/putrescine ABC transporter permease PotC compare
CSW01_11220 -1.8 -2.2 flagellar basal body rod protein FlgC compare
CSW01_17780 -1.8 -1.4 hypothetical protein compare
CSW01_11920 -1.8 -5.8 NupC/NupG family nucleoside CNT transporter compare
CSW01_05065 -1.8 -5.0 N-acetylglucosamine repressor compare
CSW01_03695 -1.7 -5.5 ribosomal large subunit pseudouridine synthase D compare
CSW01_01125 -1.7 -6.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_02970 -1.7 -5.5 glutamate--cysteine ligase compare
CSW01_09240 -1.7 -3.9 Holliday junction branch migration DNA helicase RuvB compare
CSW01_05730 -1.7 -9.5 inosine/guanosine kinase compare
CSW01_10170 -1.7 -1.6 MarC family protein compare
CSW01_00650 -1.6 -5.3 tyrosine recombinase XerC compare
CSW01_18685 -1.6 -0.8 heme utilization cystosolic carrier protein HutX compare
CSW01_00735 -1.6 -1.7 DUF1145 domain-containing protein compare
CSW01_11785 -1.5 -2.3 exonuclease V subunit gamma compare
CSW01_00470 -1.5 -3.0 twin-arginine translocase subunit TatC compare
CSW01_09720 -1.5 -1.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_11800 -1.5 -2.1 hydroxyacid dehydrogenase compare
CSW01_10560 -1.4 -4.1 chorismate synthase compare
CSW01_02450 -1.4 -5.9 pyrroline-5-carboxylate reductase compare
CSW01_13810 -1.4 -4.6 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_00675 -1.4 -1.5 hypothetical protein compare
CSW01_03785 -1.4 -2.5 phosphate ABC transporter permease compare
CSW01_08730 -1.4 -1.6 phage-shock protein compare
CSW01_00085 -1.3 -2.1 heat-shock protein Hsp20 compare
CSW01_15705 -1.3 -1.6 DUF3265 domain-containing protein compare
CSW01_03065 -1.3 -2.1 ClpXP protease specificity-enhancing factor compare
CSW01_01820 -1.3 -4.1 N-acetylmuramoyl-L-alanine amidase compare
CSW01_12130 -1.3 -1.4 DUF721 domain-containing protein compare
CSW01_04910 -1.3 -1.8 PhoH family protein compare
CSW01_01490 -1.3 -1.9 Fis family transcriptional regulator compare
CSW01_12665 -1.3 -2.6 RDD family protein compare
CSW01_13445 -1.3 -1.9 elongation factor P compare
CSW01_10270 -1.3 -1.9 cytochrome c-type biogenesis protein CcmE compare
CSW01_16915 -1.3 -3.1 EAL domain-containing protein compare
CSW01_16835 -1.3 -3.2 catabolite repressor/activator compare
CSW01_00415 -1.3 -0.9 hypothetical protein compare
CSW01_07215 -1.3 -1.8 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_04285 -1.2 -1.3 toxin coregulated pilus biosynthesis protein R compare
CSW01_06790 -1.2 -3.1 maleylacetoacetate isomerase compare
CSW01_17495 -1.2 -4.0 glycerol-3-phosphate dehydrogenase compare
CSW01_11240 -1.2 -1.5 flagella basal body P-ring formation protein FlgA compare
CSW01_05310 -1.2 -2.4 DUF3379 domain-containing protein compare
CSW01_04375 -1.2 -1.1 SsrA-binding protein compare
CSW01_09920 -1.2 -1.0 chromosome partitioning protein ParA compare
CSW01_02530 -1.2 -3.1 D-erythrose-4-phosphate dehydrogenase compare
CSW01_15965 -1.1 -1.4 DUF645 domain-containing protein compare
CSW01_19385 -1.1 -1.8 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY compare
CSW01_15865 -1.1 -1.0 DUF3465 domain-containing protein compare
CSW01_12090 -1.1 -3.3 hypothetical protein compare
CSW01_10255 -1.1 -1.1 cytochrome c-type biogenesis protein CcmH compare
CSW01_13395 -1.1 -3.0 PadR family transcriptional regulator compare
CSW01_11745 -1.1 -2.2 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_18590 -1.1 -2.2 LysR family transcriptional regulator compare
CSW01_07890 -1.1 -1.8 hypothetical protein compare
CSW01_10415 -1.1 -2.9 succinate--CoA ligase subunit alpha compare
CSW01_08625 -1.1 -3.3 chromosome partition protein MukE compare
CSW01_09465 -1.1 -2.6 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_11195 -1.0 -1.3 flagellar L-ring protein compare
CSW01_05240 -1.0 -1.1 CBS domain-containing protein compare
CSW01_05490 -1.0 -3.3 L-threonylcarbamoyladenylate synthase compare
CSW01_16205 -1.0 -2.0 DUF3465 domain-containing protein compare
CSW01_06030 -1.0 -1.2 helicase compare
CSW01_17060 -1.0 -1.9 DUF2861 domain-containing protein compare
CSW01_13165 -1.0 -4.0 sel1 repeat family protein compare
CSW01_11145 -1.0 -2.0 hypothetical protein compare
CSW01_06395 -1.0 -4.2 iron-regulated protein A compare
CSW01_00465 -1.0 -1.1 twin-arginine translocase subunit TatB compare
CSW01_10285 -1.0 -1.4 heme exporter protein CcmB compare
CSW01_06835 -1.0 -1.5 BAX inhibitor protein compare
CSW01_18270 -1.0 -1.0 L-ectoine synthase compare
CSW01_05125 -1.0 -1.0 ribonuclease T compare
CSW01_00195 -1.0 -1.4 hypothetical protein compare
CSW01_04535 -1.0 -1.5 N-acetyltransferase compare
CSW01_18830 -1.0 -2.1 DeoR/GlpR family transcriptional regulator compare
CSW01_11205 -1.0 -3.2 flagellar basal-body rod protein FlgF compare
CSW01_09010 -0.9 -0.9 hypothetical protein compare
CSW01_01555 -0.9 -5.0 ATP-dependent RNA helicase RhlB compare
CSW01_06235 -0.9 -1.5 hypothetical protein compare
CSW01_06390 -0.9 -2.5 thiol oxidoreductase compare
CSW01_15380 -0.9 -2.2 hypothetical protein compare
CSW01_04865 -0.9 -1.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CSW01_06935 -0.9 -1.2 exonuclease compare
CSW01_14815 -0.9 -1.0 hypothetical protein compare
CSW01_02005 -0.9 -3.0 hypothetical protein compare
CSW01_18705 -0.9 -1.6 biopolymer transporter exbD1 compare
CSW01_11190 -0.9 -3.2 flagellar P-ring protein compare
CSW01_15780 -0.9 -2.3 hypothetical protein compare
CSW01_15740 -0.9 -2.6 hypothetical protein compare
CSW01_08055 -0.9 -1.3 amino acid ABC transporter substrate-binding protein compare
CSW01_11200 -0.9 -2.9 flagellar basal-body rod protein FlgG compare
CSW01_17745 -0.9 -1.1 diacylglycerol kinase compare
CSW01_17000 -0.9 -0.8 DUF3332 domain-containing protein compare
CSW01_15205 -0.9 -2.7 HTH-type transcriptional regulator UlaR compare
CSW01_09245 -0.9 -2.3 Holliday junction branch migration protein RuvA compare
CSW01_03915 -0.9 -1.0 Fe-S assembly protein IscX compare
CSW01_10410 -0.9 -1.5 zinc ABC transporter permease compare
CSW01_04390 -0.9 -1.3 outer membrane protein assembly factor BamE compare
CSW01_14085 -0.8 -1.5 transcriptional regulator compare
CSW01_00065 -0.8 -3.6 DNA replication and repair protein RecF compare
CSW01_05985 -0.8 -2.2 thioredoxin-disulfide reductase compare
CSW01_18775 -0.8 -2.6 hypothetical protein compare
CSW01_06795 -0.8 -2.2 two-component system response regulator compare
CSW01_03760 -0.8 -2.7 phosphate regulon transcriptional regulatory protein PhoB compare
CSW01_01330 -0.8 -1.3 oxidoreductase compare
CSW01_07210 -0.8 -1.3 hypothetical protein compare
CSW01_17785 -0.8 -1.4 hypothetical protein compare
CSW01_03100 -0.8 -1.8 TetR/AcrR family transcriptional regulator compare
CSW01_10010 -0.8 -2.1 hypothetical protein compare
CSW01_15100 -0.8 -1.7 hypothetical protein compare
CSW01_01855 -0.8 -1.4 DUF2065 domain-containing protein compare
CSW01_02980 -0.8 -2.9 HlyC/CorC family transporter compare
CSW01_15170 -0.8 -2.4 hypothetical protein compare
CSW01_09955 -0.8 -2.4 L-asparaginase 1 compare
CSW01_10635 -0.8 -2.7 flagellum-specific ATP synthase FliI compare
CSW01_06560 -0.8 -1.7 6-carboxytetrahydropterin synthase QueD compare
CSW01_05130 -0.8 -2.0 flagellar protein MotY compare
CSW01_08620 -0.8 -4.3 chromosome partition protein MukB compare
CSW01_13155 -0.8 -4.4 ribonuclease R compare
CSW01_06870 -0.8 -2.2 7-carboxy-7-deazaguanine synthase QueE compare
CSW01_11535 -0.8 -2.4 thiamine-phosphate kinase compare
CSW01_14780 -0.8 -1.2 cation:proton antiporter compare
CSW01_07895 -0.8 -3.3 class II fumarate hydratase compare
CSW01_16860 -0.8 -3.0 tellurium resistance protein compare
CSW01_16040 -0.8 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_11105 -0.8 -2.0 hypothetical protein compare
CSW01_14080 -0.8 -0.5 DUF3283 domain-containing protein compare
CSW01_02380 -0.8 -1.3 tRNA-Asn compare
CSW01_05950 -0.8 -4.1 anthranilate synthase component I compare
CSW01_15165 -0.8 -2.2 DNA-binding response regulator compare
CSW01_12255 -0.8 -2.6 flavodoxin FldB compare
CSW01_05825 -0.7 -2.2 transcriptional regulator HexR compare
CSW01_12465 -0.7 -2.2 elongation factor 4 compare
CSW01_08705 -0.7 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_01240 -0.7 -2.2 lipopolysaccharide biosynthesis protein compare
CSW01_07185 -0.7 -2.7 universal stress protein UspE compare
CSW01_08240 -0.7 -2.1 ATP-binding protein compare
CSW01_16030 -0.7 -1.2 DUF3709 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms