Experiment set4IT086 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS05515 -9.1 -8.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06685 -9.0 -6.2 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06355 -8.7 -5.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06700 -8.1 -14.6 hypothetical protein compare
MMP_RS01175 -7.5 -6.9 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06350 -7.1 -8.9 HesA/MoeB/ThiF family protein compare
MMP_RS06680 -7.1 -12.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06400 -7.0 -4.0 4Fe-4S binding protein compare
MMP_RS06705 -6.8 -10.1 formate/nitrite transporter family protein compare
MMP_RS06715 -6.7 -15.6 cache domain-containing protein compare
MMP_RS07445 -6.7 -10.3 helix-turn-helix domain-containing protein compare
MMP_RS06720 -6.3 -10.5 response regulator transcription factor compare
MMP_RS01500 -6.2 -4.4 CBS domain-containing protein compare
MMP_RS01020 -6.0 -2.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06345 -5.9 -14.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS03015 -5.7 -13.6 GTP 3' 8-cyclase MoaA compare
MMP_RS06295 -5.7 -10.8 methanogenesis marker 14 protein compare
MMP_RS02280 -5.5 -1.9 DUF211 domain-containing protein compare
MMP_RS03315 -5.5 -3.1 ferrous iron transport protein A compare
MMP_RS07635 -5.5 -12.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06475 -5.4 -7.4 FAD-dependent oxidoreductase compare
MMP_RS08095 -5.4 -10.3 dethiobiotin synthase compare
MMP_RS08210 -5.4 -4.1 phosphatidylglycerophosphatase A compare
MMP_RS08720 -5.4 -3.5 4Fe-4S binding protein compare
MMP_RS00305 -5.3 -3.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS01795 -5.3 -3.7 methanogenesis marker 6 protein compare
MMP_RS08790 -5.2 -4.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS04585 -5.2 -12.7 AIR synthase related protein compare
MMP_RS02195 -5.2 -6.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS01985 -5.1 -8.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS08635 -5.1 -3.5 UbiA family prenyltransferase compare
MMP_RS01005 -5.1 -2.4 riboflavin synthase compare
MMP_RS04615 -5.1 -6.3 PDGLE domain-containing protein compare
MMP_RS03640 -5.1 -6.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS04605 -5.0 -4.5 cobalt ECF transporter T component CbiQ compare
MMP_RS08100 -5.0 -12.6 8-amino-7-oxononanoate synthase compare
MMP_RS00110 -5.0 -5.9 hypothetical protein compare
MMP_RS01800 -4.9 -6.9 TIGR00303 family protein compare
MMP_RS04780 -4.9 -4.8 ribonuclease P compare
MMP_RS02875 -4.9 -11.1 chorismate pyruvate-lyase family protein compare
MMP_RS01325 -4.8 -4.2 dihydroneopterin aldolase family protein compare
MMP_RS04500 -4.8 -19.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS02900 -4.8 -1.6 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS08460 -4.8 -4.4 proteasome-activating nucleotidase compare
MMP_RS01755 -4.8 -2.2 DUF2097 domain-containing protein compare
MMP_RS00300 -4.8 -1.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01610 -4.7 -6.2 hypothetical protein compare
MMP_RS08745 -4.7 -10.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS04775 -4.7 -6.1 adenosylhomocysteinase compare
MMP_RS00685 -4.6 -6.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07630 -4.5 -3.4 ATP-binding cassette domain-containing protein compare
MMP_RS08645 -4.5 -11.8 UPF0179 family protein compare
MMP_RS06730 -4.5 -3.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS08105 -4.5 -9.3 6-carboxyhexanoate--CoA ligase compare
MMP_RS08300 -4.5 -2.5 metal-sulfur cluster assembly factor compare
MMP_RS04620 -4.5 -14.4 cobalt transporter CbiM compare
MMP_RS06370 -4.4 -7.6 biotin synthase BioB compare
MMP_RS06120 -4.4 -3.7 UPF0147 family protein compare
MMP_RS03445 -4.4 -2.1 methanogenesis marker 17 protein compare
MMP_RS07600 -4.3 -4.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07645 -4.3 -11.0 aldehyde dehydrogenase family protein compare
MMP_RS08650 -4.2 -6.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS06315 -4.2 -2.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07845 -4.2 -5.5 LL-diaminopimelate aminotransferase compare
MMP_RS01700 -4.2 -2.0 dihydroxy-acid dehydratase compare
MMP_RS06270 -4.2 -8.8 TIGR00300 family protein compare
MMP_RS01225 -4.2 -7.4 DUF5379 domain-containing protein compare
MMP_RS03580 -4.1 -3.5 signal recognition particle-docking protein FtsY compare
MMP_RS06020 -4.1 -8.0 archaeoflavoprotein AfpA compare
MMP_RS07380 -4.1 -4.2 transcription elongation factor Spt5 compare
MMP_RS06895 -4.1 -3.0 selenocysteine-specific translation elongation factor compare
MMP_RS00515 -4.0 -1.9 DUF655 domain-containing protein compare
MMP_RS03600 -4.0 -5.4 triose-phosphate isomerase compare
MMP_RS08820 -3.9 -9.5 hypothetical protein compare
MMP_RS01265 -3.9 -3.3 hypothetical protein compare
MMP_RS03400 -3.9 -4.9 archease compare
MMP_RS02240 -3.8 -4.8 methanogenesis marker 7 protein compare
MMP_RS03035 -3.8 -6.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06230 -3.8 -3.8 helix-turn-helix domain-containing protein compare
MMP_RS06625 -3.8 -4.0 DNA primase compare
MMP_RS06340 -3.8 -9.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07605 -3.8 -5.5 diadenylate cyclase compare
MMP_RS07195 -3.7 -12.0 M20 family metallo-hydrolase compare
MMP_RS07730 -3.7 -3.8 pyruvate synthase subunit beta compare
MMP_RS04685 -3.7 -3.5 DUF126 domain-containing protein compare
MMP_RS05095 -3.6 -13.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01220 -3.6 -8.2 hypothetical protein compare
MMP_RS02135 -3.6 -6.5 DUF5612 domain-containing protein compare
MMP_RS09020 -3.5 -3.4 hypothetical protein compare
MMP_RS08435 -3.5 -4.3 Era-like GTP-binding protein compare
MMP_RS06925 -3.5 -4.1 ribonuclease VapC4 compare
MMP_RS03700 -3.4 -11.4 sodium:proton antiporter compare
MMP_RS07580 -3.4 -3.9 DUF356 domain-containing protein compare
MMP_RS03435 -3.4 -3.5 ketol-acid reductoisomerase compare
MMP_RS07525 -3.4 -7.8 4Fe-4S binding protein compare
MMP_RS03025 -3.4 -7.2 molybdenum cofactor guanylyltransferase compare
MMP_RS07005 -3.3 -1.5 4Fe-4S binding protein compare
MMP_RS03155 -3.3 -11.0 precorrin-6A reductase compare
MMP_RS05440 -3.3 -15.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS07390 -3.3 -4.0 cell division protein FtsZ compare
MMP_RS01385 -3.2 -1.5 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00895 -3.2 -6.2 hypothetical protein compare
MMP_RS05345 -3.2 -10.1 hypothetical protein compare
MMP_RS05845 -3.2 -3.6 tRNA-intron lyase compare
MMP_RS04710 -3.2 -3.0 hypothetical protein compare
MMP_RS05085 -3.1 -16.5 AAA family ATPase compare
MMP_RS02145 -3.1 -8.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS01380 -3.1 -6.4 PHP domain-containing protein compare
MMP_RS05920 -3.0 -1.4 50S ribosomal protein L37e compare
MMP_RS08715 -3.0 -2.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS00695 -3.0 -1.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05075 -3.0 -20.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05100 -3.0 -20.8 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS06285 -3.0 -4.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS07735 -3.0 -2.0 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06885 -3.0 -3.6 50S ribosome-binding GTPase compare
MMP_RS01830 -3.0 -3.6 tRNA-Val compare
MMP_RS08445 -2.9 -6.7 DUF2099 family protein compare
MMP_RS04890 -2.9 -1.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS00320 -2.8 -4.1 class I SAM-dependent methyltransferase compare
MMP_RS06940 -2.8 -3.1 polyprenyl diphosphate synthase compare
MMP_RS05080 -2.7 -15.9 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05090 -2.7 -14.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS02355 -2.7 -4.0 30S ribosomal protein S27ae compare
MMP_RS06105 -2.7 -9.9 hydrogenase maturation peptidase HycI compare
MMP_RS05055 -2.7 -17.5 DUF166 domain-containing protein compare
MMP_RS01725 -2.6 -7.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS02345 -2.6 -5.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS00115 -2.6 -13.4 radical SAM protein compare
MMP_RS07200 -2.6 -10.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01475 -2.6 -10.1 phosphosulfolactate synthase compare
MMP_RS07545 -2.5 -2.1 HTH domain-containing protein compare
MMP_RS08440 -2.5 -3.5 cell division protein SepF compare
MMP_RS00985 -2.5 -7.9 CDC48 family AAA ATPase compare
MMP_RS05930 -2.5 -2.7 3-isopropylmalate dehydratase large subunit compare
MMP_RS07365 -2.5 -12.3 2-phosphoglycerate kinase compare
MMP_RS03960 -2.5 -1.8 hypothetical protein compare
MMP_RS05265 -2.4 -3.6 2-isopropylmalate synthase compare
MMP_RS05815 -2.4 -1.9 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00295 -2.4 -4.9 gamma carbonic anhydrase family protein compare
MMP_RS02010 -2.4 -10.2 PHP domain-containing protein compare
MMP_RS01955 -2.3 -4.2 hypothetical protein compare
MMP_RS03475 -2.3 -1.3 hypothetical protein compare
MMP_RS02165 -2.3 -11.8 tRNA-dihydrouridine synthase compare
MMP_RS05060 -2.3 -14.4 AAA family ATPase compare
MMP_RS05070 -2.3 -9.1 4Fe-4S dicluster domain-containing protein compare
MMP_RS02340 -2.3 -2.0 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07685 -2.2 -9.0 TIGR01212 family radical SAM protein compare
MMP_RS06215 -2.2 -6.3 30S ribosomal protein S6e compare
MMP_RS05065 -2.2 -6.9 CooT family nickel-binding protein compare
MMP_RS05430 -2.2 -4.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS02235 -2.1 -10.5 CBS domain-containing protein compare
MMP_RS00900 -2.1 -3.2 50S ribosomal protein L39e compare
MMP_RS05540 -2.0 -2.7 hypothetical protein compare
MMP_RS01545 -2.0 -2.2 CBS domain-containing protein compare
MMP_RS01250 -2.0 -8.3 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS07750 -2.0 -6.5 DUF357 domain-containing protein compare
MMP_RS07575 -2.0 -4.7 RNA ligase partner protein compare
MMP_RS01840 -2.0 -8.0 TIGR00289 family protein compare
MMP_RS03095 -1.9 -6.9 diphthine synthase compare
MMP_RS01335 -1.9 -4.7 prefoldin subunit beta compare
MMP_RS00620 -1.8 -9.3 4Fe-4S binding protein compare
MMP_RS05925 -1.8 -4.0 small nuclear ribonucleoprotein compare
MMP_RS05250 -1.8 -2.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01365 -1.8 -2.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03140 -1.8 -10.8 hypothetical protein compare
MMP_RS00050 -1.8 -8.4 AarF/UbiB family protein compare
MMP_RS06975 -1.8 -2.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06200 -1.7 -10.2 M24 family metallopeptidase compare
MMP_RS05875 -1.6 -3.0 hydroxyethylthiazole kinase compare
MMP_RS03205 -1.6 -1.7 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS02110 -1.6 -1.6 hypothetical protein compare
MMP_RS08785 -1.6 -2.0 RNA-protein complex protein Nop10 compare
MMP_RS05850 -1.6 -6.7 Ldh family oxidoreductase compare
MMP_RS04870 -1.6 -3.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS05550 -1.5 -1.1 cation:proton antiporter compare
MMP_RS07700 -1.5 -8.9 DUF1188 domain-containing protein compare
MMP_RS03145 -1.5 -5.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07755 -1.5 -2.0 DUF555 domain-containing protein compare
MMP_RS01445 -1.5 -6.7 hypothetical protein compare
MMP_RS00040 -1.5 -5.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06395 -1.5 -6.5 ThiF family adenylyltransferase compare
MMP_RS07075 -1.5 -3.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS05545 -1.5 -7.8 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01045 -1.5 -7.4 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS00290 -1.5 -6.4 hypothetical protein compare
MMP_RS02800 -1.5 -5.4 nucleotidyltransferase domain-containing protein compare
MMP_RS08840 -1.4 -9.5 class I SAM-dependent methyltransferase compare
MMP_RS06130 -1.4 -4.0 peptidylprolyl isomerase compare
MMP_RS07420 -1.4 -3.3 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05555 -1.4 -2.0 DUF4040 domain-containing protein compare
MMP_RS00455 -1.4 -9.4 orotate phosphoribosyltransferase-like protein compare
MMP_RS07425 -1.4 -5.2 GTP-binding protein compare
MMP_RS00750 -1.4 -2.8 fumarate hydratase compare
MMP_RS00730 -1.4 -6.2 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS01980 -1.4 -10.9 trimeric intracellular cation channel family protein compare
MMP_RS00315 -1.4 -7.6 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS05245 -1.4 -8.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS06865 -1.4 -1.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS07695 -1.4 -7.2 DUF3236 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 casamino acids across organisms