Experiment set4IT085 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Doxycycline hyclate 0.0002 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.9 -2.7 peroxidase compare
AO353_20565 -3.9 -2.4 tRNA-Ala compare
AO353_00495 -3.2 -2.2 DNA topoisomerase I compare
AO353_17300 -3.1 -8.1 antibiotic transporter compare
AO353_09315 -3.1 -11.0 LysR family transcriptional regulator compare
AO353_19020 -3.0 -4.2 hypothetical protein compare
AO353_06585 -3.0 -7.1 hypothetical protein compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_17295 -2.9 -17.0 multidrug transporter compare
AO353_18630 -2.8 -9.7 beta-ketoacyl-ACP synthase compare
AO353_05145 -2.8 -5.3 ABC transporter permease compare
AO353_05135 -2.8 -7.6 toluene tolerance protein compare
AO353_00330 -2.8 -8.4 hypothetical protein compare
AO353_26835 -2.8 -4.1 transcriptional regulator compare
AO353_17290 -2.8 -6.1 multidrug transporter compare
AO353_07315 -2.7 -3.6 rRNA methyltransferase compare
AO353_02690 -2.6 -10.5 dehydrogenase compare
AO353_06040 -2.5 -3.7 exodeoxyribonuclease V subunit alpha compare
AO353_01220 -2.4 -3.2 hypothetical protein compare
AO353_02940 -2.4 -4.0 DNA-binding protein compare
AO353_16915 -2.4 -10.1 hypothetical protein compare
AO353_06865 -2.4 -14.4 catalase compare
AO353_20170 -2.4 -5.3 trigger factor compare
AO353_25990 -2.3 -6.8 aspartyl beta-hydroxylase compare
AO353_15905 -2.3 -5.8 outer membrane protein assembly factor BamB compare
AO353_14775 -2.3 -5.4 hypothetical protein compare
AO353_08265 -2.3 -5.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_11340 -2.2 -2.5 MarR family transcriptional regulator compare
AO353_09275 -2.2 -4.1 DNA-directed RNA polymerase subunit omega compare
AO353_03360 -2.2 -7.9 glucose-6-phosphate dehydrogenase compare
AO353_03595 -2.2 -4.3 hypothetical protein compare
AO353_01215 -2.1 -9.4 hypothetical protein compare
AO353_02440 -2.1 -11.2 peptidase S41 compare
AO353_05140 -2.1 -7.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_12105 -2.1 -5.8 peptidase S41 compare
AO353_18555 -2.1 -12.3 aromatic amino acid transporter compare
AO353_05150 -2.1 -4.1 ABC transporter ATP-binding protein compare
AO353_27650 -2.0 -4.6 cell division protein FtsK compare
AO353_13040 -2.0 -7.6 esterase conserved
AO353_03715 -2.0 -2.2 H-NS histone compare
AO353_10950 -2.0 -8.6 thiol:disulfide interchange protein compare
AO353_09950 -1.9 -4.9 aspartate ammonia-lyase compare
AO353_00515 -1.9 -2.7 hypothetical protein compare
AO353_03615 -1.8 -3.6 cold-shock protein compare
AO353_11770 -1.8 -2.1 molecular chaperone Hsp33 compare
AO353_12055 -1.8 -6.0 cell envelope biogenesis protein AsmA compare
AO353_02250 -1.8 -3.0 chorismate synthase compare
AO353_04490 -1.8 -8.7 murein transglycosylase compare
AO353_09050 -1.8 -4.0 recombinase XerC compare
AO353_07925 -1.8 -8.8 beta-hydroxylase compare
AO353_00825 -1.8 -4.2 porin compare
AO353_20800 -1.8 -1.7 hypothetical protein compare
AO353_04355 -1.7 -2.2 homoserine dehydrogenase compare
AO353_06045 -1.7 -6.7 exodeoxyribonuclease V subunit beta compare
AO353_04365 -1.7 -5.5 recombinase XerD compare
AO353_18960 -1.7 -2.5 terminase compare
AO353_06720 -1.7 -2.2 NrdR family transcriptional regulator compare
AO353_12470 -1.6 -11.5 peptidase compare
AO353_00430 -1.6 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03710 -1.6 -2.3 formyltetrahydrofolate deformylase compare
AO353_12115 -1.6 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03830 -1.6 -2.1 antibiotic biosynthesis monooxygenase compare
AO353_17100 -1.6 -2.9 hypothetical protein compare
AO353_03290 -1.6 -2.4 peptide deformylase compare
AO353_02710 -1.6 -9.2 (p)ppGpp synthetase compare
AO353_00860 -1.5 -4.4 EstX protein compare
AO353_03420 -1.5 -4.1 phosphogluconate dehydratase compare
AO353_18130 -1.5 -3.0 hypothetical protein compare
AO353_09885 -1.5 -2.1 transcriptional regulator PhoU compare
AO353_09320 -1.5 -7.6 ATP-dependent DNA helicase RecG compare
AO353_12950 -1.5 -6.8 polymerase compare
AO353_10930 -1.5 -6.6 DNA polymerase I compare
AO353_13225 -1.5 -3.1 50S ribosomal protein L9 compare
AO353_25505 -1.5 -8.0 4-amino-4-deoxy-L-arabinose transferase compare
AO353_04565 -1.5 -5.4 nucleoid-associated protein compare
AO353_09905 -1.5 -7.3 phosphate-binding protein compare
AO353_20625 -1.5 -3.6 3-isopropylmalate dehydratase compare
AO353_05420 -1.5 -2.3 peptide chain release factor 3 compare
AO353_04190 -1.5 -2.4 glycerol-3-phosphate dehydrogenase compare
AO353_03585 -1.5 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_25550 -1.5 -4.8 4-amino-4-deoxy-L-arabinose transferase compare
AO353_16825 -1.5 -4.8 hypothetical protein compare
AO353_07355 -1.5 -4.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_10995 -1.4 -7.3 hypothetical protein compare
AO353_06725 -1.4 -1.7 hypothetical protein compare
AO353_13200 -1.4 -8.3 exoribonuclease R compare
AO353_15490 -1.4 -2.0 hypothetical protein compare
AO353_15285 -1.4 -8.2 hypothetical protein compare
AO353_16940 -1.4 -5.0 deoxycytidine triphosphate deaminase compare
AO353_09040 -1.4 -1.4 diaminopimelate epimerase compare
AO353_27695 -1.4 -6.3 isocitrate dehydrogenase compare
AO353_03670 -1.4 -4.2 ornithine acetyltransferase compare
AO353_14370 -1.4 -5.2 glucose-6-phosphate isomerase compare
AO353_08885 -1.3 -9.1 polyphosphate kinase compare
AO353_12540 -1.3 -2.9 hypothetical protein compare
AO353_22700 -1.3 -2.6 LexA family transcriptional regulator compare
AO353_07155 -1.3 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_09060 -1.3 -2.2 hypothetical protein compare
AO353_23905 -1.3 -3.9 GntR family transcriptional regulator compare
AO353_18170 -1.3 -5.4 aspartyl beta-hydroxylase compare
AO353_12150 -1.3 -4.0 histidine kinase compare
AO353_18715 -1.3 -1.2 histidine kinase compare
AO353_06050 -1.3 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_23730 -1.3 -2.6 hypothetical protein compare
AO353_10630 -1.3 -3.6 16S rRNA methyltransferase compare
AO353_07325 -1.3 -1.8 diadenosine tetraphosphatase compare
AO353_09260 -1.3 -5.4 ribonuclease PH compare
AO353_13640 -1.3 -3.3 histidine kinase compare
AO353_15250 -1.2 -3.0 cytochrome B compare
AO353_28555 -1.2 -2.1 LysR family transcriptional regulator compare
AO353_07465 -1.2 -2.8 addiction module toxin RelE compare
AO353_00760 -1.2 -2.2 hypothetical protein compare
AO353_00310 -1.2 -6.6 transaldolase compare
AO353_23735 -1.2 -5.8 AAA family ATPase compare
AO353_26390 -1.2 -2.1 glyoxalase compare
AO353_12945 -1.2 -4.6 toluene tolerance protein compare
AO353_17955 -1.2 -5.8 MFS transporter compare
AO353_19790 -1.2 -7.0 sodium:proton antiporter compare
AO353_25570 -1.2 -6.7 glycosyltransferase compare
AO353_23710 -1.2 -4.3 protein BatD compare
AO353_15830 -1.2 -1.6 transcriptional regulator compare
AO353_15260 -1.2 -4.4 stringent starvation protein A compare
AO353_06775 -1.2 -5.0 dTDP-4-dehydrorhamnose reductase compare
AO353_13720 -1.2 -8.0 arginine decarboxylase compare
AO353_23725 -1.2 -3.9 hypothetical protein compare
AO353_03370 -1.1 -3.4 aldose epimerase compare
AO353_03590 -1.1 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_17635 -1.1 -5.2 RNA polymerase subunit sigma compare
AO353_20585 -1.1 -2.6 TetR family transcriptional regulator compare
AO353_18890 -1.1 -3.8 cytochrome C compare
AO353_26310 -1.1 -3.5 hypothetical protein compare
AO353_09250 -1.1 -2.5 exodeoxyribonuclease III compare
AO353_03795 -1.1 -3.2 fumarate hydratase compare
AO353_06540 -1.1 -2.2 hypothetical protein compare
AO353_06415 -1.1 -2.5 hypothetical protein compare
AO353_06530 -1.1 -7.5 peptidase C13 compare
AO353_13395 -1.1 -1.9 protein hupE compare
AO353_24130 -1.1 -2.3 hypothetical protein compare
AO353_18780 -1.1 -4.6 cobyrinic acid a,c-diamide synthase compare
AO353_16605 -1.1 -7.3 protein-L-isoaspartate O-methyltransferase compare
AO353_09000 -1.1 -3.7 argininosuccinate lyase compare
AO353_23715 -1.1 -4.4 hypothetical protein compare
AO353_02190 -1.0 -7.0 hypothetical protein compare
AO353_17155 -1.0 -7.0 RNA polymerase-associated protein RapA compare
AO353_17175 -1.0 -2.1 beta-ketoadipyl CoA thiolase compare
AO353_11935 -1.0 -6.9 hypothetical protein compare
AO353_00855 -1.0 -3.9 Rieske iron-sulfur protein compare
AO353_28110 -1.0 -3.9 TetR family transcriptional regulator compare
AO353_13220 -1.0 -4.1 hypothetical protein compare
AO353_21430 -1.0 -2.2 hypothetical protein compare
AO353_11165 -1.0 -5.3 hypothetical protein compare
AO353_13415 -1.0 -3.3 TetR family transcriptional regulator compare
AO353_00185 -1.0 -1.7 phage tail protein compare
AO353_23405 -1.0 -1.9 hypothetical protein compare
AO353_08165 -1.0 -2.3 pyrroline-5-carboxylate reductase compare
AO353_00670 -1.0 -3.3 acyl-CoA dehydrogenase compare
AO353_05130 -1.0 -1.3 anti-anti-sigma factor compare
AO353_14740 -1.0 -2.5 GTP-binding protein compare
AO353_06100 -1.0 -1.5 thymidylate synthase compare
AO353_10915 -1.0 -6.6 ABC transporter substrate-binding protein compare
AO353_01190 -1.0 -1.5 hypothetical protein compare
AO353_09705 -1.0 -2.2 hypothetical protein compare
AO353_16375 -1.0 -1.5 hypothetical protein compare
AO353_02070 -1.0 -4.7 prephenate dehydratase compare
AO353_20425 -1.0 -1.8 ArsC family transcriptional regulator compare
AO353_17235 -1.0 -2.6 4-carboxymuconolactone decarboxylase compare
AO353_20410 -1.0 -1.8 hypothetical protein compare
AO353_06490 -1.0 -2.0 nicotinate-nucleotide adenylyltransferase compare
AO353_10670 -1.0 -4.1 shikimate dehydrogenase compare
AO353_12940 -1.0 -4.4 glycosyl transferase compare
AO353_20785 -1.0 -2.9 carbon storage regulator CsrA compare
AO353_26070 -1.0 -2.3 hypothetical protein compare
AO353_09240 -1.0 -2.2 acetylglutamate kinase compare
AO353_10985 -1.0 -2.3 hypothetical protein compare
AO353_16495 -1.0 -2.9 zinc metallopeptidase RseP compare
AO353_08115 -1.0 -4.1 energy transducer TonB compare
AO353_19030 -1.0 -4.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_16805 -1.0 -3.7 recombinase RecA compare
AO353_10070 -1.0 -5.7 cell wall assembly protein compare
AO353_14550 -1.0 -6.9 paraquat-inducible protein A conserved
AO353_07075 -1.0 -3.0 elongation factor Tu compare
AO353_05735 -0.9 -7.1 hypothetical protein compare
AO353_08260 -0.9 -5.8 peptidase M16 compare
AO353_14560 -0.9 -7.2 mammalian cell entry protein conserved
AO353_05840 -0.9 -6.3 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_13920 -0.9 -1.3 dihydroxyacetone kinase compare
AO353_08725 -0.9 -4.0 aminotransferase DegT compare
AO353_01975 -0.9 -4.4 glycosyl transferase compare
AO353_22920 -0.9 -3.4 GntR family transcriptional regulator compare
AO353_26815 -0.9 -2.9 transcriptional regulator compare
AO353_18520 -0.9 -4.0 phosphoesterase compare
AO353_17445 -0.9 -1.5 hypothetical protein compare
AO353_17000 -0.9 -3.8 hypothetical protein compare
AO353_03100 -0.9 -1.2 XRE family transcriptional regulator compare
AO353_23720 -0.9 -2.7 BatB protein compare
AO353_10900 -0.9 -5.3 hypothetical protein compare
AO353_28310 -0.9 -2.3 deaminase compare
AO353_00820 -0.9 -3.8 uroporphyrin-III methyltransferase compare
AO353_14420 -0.9 -2.7 molecular chaperone DnaK compare
AO353_08560 -0.9 -4.2 spermidine/putrescine ABC transporter permease compare


Specific Phenotypes

For 8 genes in this experiment

For stress Doxycycline hyclate in Pseudomonas fluorescens FW300-N2E3

For stress Doxycycline hyclate across organisms