Experiment set4IT085 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Sodium octanoate carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_291 -5.6 -6.6 Major outer membrane lipoprotein I compare
Pf1N1B4_1468 -4.3 -19.3 InaA protein compare
Pf1N1B4_2209 -4.1 -12.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3590 -4.0 -7.0 hypothetical protein compare
Pf1N1B4_6 -3.9 -2.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1441 -3.9 -11.9 Putative esterase, FIGfam005057 compare
Pf1N1B4_1408 -3.8 -3.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2491 -3.8 -2.6 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2208 -3.7 -7.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2880 -3.6 -12.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2303 -3.6 -15.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_290 -3.6 -20.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2384 -3.5 -11.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2885 -3.5 -2.4 Paraquat-inducible protein A compare
Pf1N1B4_1882 -3.5 -24.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf1N1B4_1624 -3.5 -9.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4038 -3.5 -2.3 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1534 -3.4 -18.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1067 -3.4 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2545 -3.4 -12.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2548 -3.3 -7.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1830 -3.3 -10.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1469 -3.3 -17.6 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_1831 -3.3 -11.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_4030 -3.3 -2.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_289 -3.3 -17.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_2338 -3.2 -7.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_292 -3.2 -21.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_1668 -3.2 -6.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_3093 -3.2 -1.9 Outer membrane protein H precursor compare
Pf1N1B4_2496 -3.2 -13.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) conserved
Pf1N1B4_1533 -3.2 -7.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1570 -3.1 -5.0 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_5666 -3.1 -2.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1307 -3.1 -2.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2488 -3.1 -7.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2282 -3.1 -9.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1315 -3.1 -7.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2939 -3.0 -5.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1889 -3.0 -18.9 Fused spore maturation proteins A and B compare
Pf1N1B4_3696 -3.0 -12.5 FIG00955360: hypothetical protein compare
Pf1N1B4_4042 -3.0 -3.5 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_1626 -3.0 -9.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_15 -3.0 -2.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_3812 -3.0 -7.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_959 -3.0 -16.7 Stringent starvation protein A compare
Pf1N1B4_2283 -3.0 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2377 -2.9 -5.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2549 -2.9 -9.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1535 -2.9 -3.4 hypothetical protein compare
Pf1N1B4_648 -2.9 -22.0 Outer membrane porin, OprD family compare
Pf1N1B4_2004 -2.9 -2.7 putative membrane protein compare
Pf1N1B4_2114 -2.9 -7.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3906 -2.9 -5.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2487 -2.9 -8.0 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1565 -2.8 -4.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1180 -2.8 -2.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_76 -2.8 -3.2 ATP binding protein compare
Pf1N1B4_5665 -2.8 -3.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_350 -2.8 -6.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2490 -2.8 -6.2 Biotin synthesis protein BioC compare
Pf1N1B4_2917 -2.8 -8.0 FIG140336: TPR domain protein compare
Pf1N1B4_1619 -2.7 -9.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2009 -2.7 -6.0 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_723 -2.7 -11.8 two-component system sensor protein compare
Pf1N1B4_3697 -2.7 -9.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_652 -2.6 -9.5 Sensory box histidine kinase compare
Pf1N1B4_29 -2.6 -3.4 FIG00967200: hypothetical protein compare
Pf1N1B4_4849 -2.6 -2.8 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_2493 -2.6 -2.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2337 -2.6 -5.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3147 -2.6 -8.6 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf1N1B4_2489 -2.6 -5.4 Biotin synthesis protein BioH compare
Pf1N1B4_2112 -2.6 -15.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3828 -2.6 -8.3 Ribonuclease E inhibitor RraA compare
Pf1N1B4_2010 -2.6 -6.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_678 -2.6 -6.8 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_12 -2.6 -5.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2478 -2.5 -8.8 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_1627 -2.5 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3817 -2.5 -4.6 FIG008443: hypothetical protein compare
Pf1N1B4_1434 -2.5 -7.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1462 -2.5 -14.1 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_1617 -2.5 -9.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_742 -2.5 -7.1 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_847 -2.5 -8.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3375 -2.5 -14.8 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf1N1B4_3833 -2.5 -6.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4041 -2.4 -2.8 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4643 -2.4 -7.1 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form conserved
Pf1N1B4_3166 -2.4 -11.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_626 -2.4 -7.5 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_2272 -2.4 -4.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2850 -2.4 -7.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_32 -2.4 -3.1 Transcriptional regulator, TetR family compare
Pf1N1B4_3591 -2.4 -6.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_1153 -2.4 -4.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2854 -2.4 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_2879 -2.3 -6.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_3909 -2.3 -2.2 Cell division inhibitor-related protein compare
Pf1N1B4_3389 -2.3 -7.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf1N1B4_2886 -2.3 -12.0 Paraquat-inducible protein B compare
Pf1N1B4_2858 -2.3 -9.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2878 -2.3 -9.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1317 -2.3 -3.6 Sensor histidine kinase/response regulator compare
Pf1N1B4_2011 -2.3 -9.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2026 -2.3 -3.6 Transcriptional regulator compare
Pf1N1B4_3113 -2.3 -11.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf1N1B4_3322 -2.3 -9.5 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_2035 -2.3 -5.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_3081 -2.3 -17.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_647 -2.2 -6.7 hypothetical protein compare
Pf1N1B4_3613 -2.2 -2.4 hypothetical protein compare
Pf1N1B4_2547 -2.2 -3.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_4028 -2.2 -3.4 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4039 -2.2 -5.9 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2169 -2.2 -2.1 FIG00953808: hypothetical protein compare
Pf1N1B4_2284 -2.2 -4.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4957 -2.2 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_1545 -2.2 -9.3 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_5930 -2.2 -5.9 Exopolysaccharide production protein ExoZ compare
Pf1N1B4_345 -2.2 -1.7 Integration host factor beta subunit compare
Pf1N1B4_1906 -2.2 -4.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2117 -2.2 -12.9 Ribonuclease PH (EC 2.7.7.56) compare
Pf1N1B4_1625 -2.2 -4.4 FIG00956267: hypothetical protein compare
Pf1N1B4_327 -2.2 -1.4 hypothetical protein compare
Pf1N1B4_1403 -2.1 -7.1 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_572 -2.1 -10.3 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_389 -2.1 -5.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) conserved
Pf1N1B4_1566 -2.1 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2008 -2.1 -9.8 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_2163 -2.1 -2.3 hypothetical protein compare
Pf1N1B4_2436 -2.1 -4.9 FIG00953563: hypothetical protein compare
Pf1N1B4_58 -2.1 -5.7 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4000 -2.1 -4.7 Outer membrane component of tripartite multidrug resistance system compare
Pf1N1B4_762 -2.1 -6.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_5904 -2.1 -2.6 FIG00955320: hypothetical protein compare
Pf1N1B4_2568 -2.1 -3.6 Translation elongation factor Tu compare
Pf1N1B4_2859 -2.1 -12.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2884 -2.0 -5.2 Paraquat-inducible protein A compare
Pf1N1B4_580 -2.0 -4.2 FIG00953813: hypothetical protein compare
Pf1N1B4_2401 -2.0 -3.7 Lipoprotein, putative compare
Pf1N1B4_430 -2.0 -2.7 hypothetical protein compare
Pf1N1B4_4568 -2.0 -2.1 FIG00793915: hypothetical protein compare
Pf1N1B4_3091 -2.0 -3.7 Membrane-associated zinc metalloprotease compare
Pf1N1B4_717 -2.0 -6.8 Iron-regulated protein A precursor compare
Pf1N1B4_2168 -2.0 -9.0 FIG004064: hypothetical protein compare
Pf1N1B4_4860 -2.0 -2.6 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_3508 -2.0 -4.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2227 -2.0 -2.8 FIG019278: hypothetical protein compare
Pf1N1B4_2037 -2.0 -4.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_1475 -2.0 -6.9 FIG00962376: hypothetical protein compare
Pf1N1B4_414 -2.0 -4.2 transcriptional regulator compare
Pf1N1B4_5618 -1.9 -2.7 Excinuclease ABC subunit C compare
Pf1N1B4_3829 -1.9 -10.8 Magnesium and cobalt transport protein CorA compare
Pf1N1B4_3246 -1.9 -3.8 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_2486 -1.9 -2.1 hypothetical protein compare
Pf1N1B4_1234 -1.9 -4.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4065 -1.9 -6.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4870 -1.9 -2.4 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_4470 -1.9 -2.3 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_4358 -1.9 -2.5 Acetyltransferase, GNAT family compare
Pf1N1B4_5661 -1.9 -5.8 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_348 -1.9 -3.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_3816 -1.9 -5.6 FIG139976: hypothetical protein compare
Pf1N1B4_4857 -1.9 -4.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4051 -1.8 -3.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_4195 -1.8 -4.2 Transcriptional regulator, TetR family compare
Pf1N1B4_2173 -1.8 -2.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_5906 -1.8 -3.6 Esterase/lipase compare
Pf1N1B4_3830 -1.8 -3.8 CrfX protein compare
Pf1N1B4_2526 -1.8 -12.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_5575 -1.8 -2.7 hypothetical protein compare
Pf1N1B4_2280 -1.8 -8.5 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3506 -1.8 -6.2 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1683 -1.8 -3.1 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1 -1.8 -2.2 Colicin V production protein compare
Pf1N1B4_718 -1.8 -5.2 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_769 -1.8 -6.3 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4750 -1.8 -5.7 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO conserved
Pf1N1B4_230 -1.8 -2.3 FIG00953472: hypothetical protein compare
Pf1N1B4_1460 -1.7 -8.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf1N1B4_324 -1.7 -2.3 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_1142 -1.7 -7.9 Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB compare
Pf1N1B4_5383 -1.7 -8.9 hypothetical protein compare
Pf1N1B4_1544 -1.7 -6.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5055 -1.7 -2.8 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_4611 -1.7 -1.5 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_115 -1.7 -2.1 Membrane protein mosC compare
Pf1N1B4_3329 -1.7 -6.2 Putative permease PerM (= YfgO) conserved
Pf1N1B4_3815 -1.7 -4.6 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf1N1B4_3849 -1.7 -3.7 Transcriptional regulator, GntR family compare
Pf1N1B4_1296 -1.7 -9.5 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) compare
Pf1N1B4_165 -1.7 -2.8 FIG00638667: hypothetical protein compare
Pf1N1B4_4549 -1.7 -2.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_2874 -1.6 -3.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2856 -1.6 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_4640 -1.6 -3.4 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_5509 -1.6 -2.0 hypothetical protein compare
Pf1N1B4_2105 -1.6 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare


Specific Phenotypes

For 29 genes in this experiment

For carbon source Sodium octanoate in Pseudomonas fluorescens FW300-N1B4

For carbon source Sodium octanoate across organisms