Experiment set4IT085 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_4.1_MOI_rep2

200 most important genes:

  gene name fitness t score description  
CSW01_13670 -6.4 -2.4 DNA-directed RNA polymerase subunit omega compare
CSW01_14080 -4.5 -1.0 DUF3283 domain-containing protein compare
CSW01_00450 -4.4 -1.9 SCP2 domain-containing protein compare
CSW01_18150 -4.4 -1.0 transcription initiation factor TFIIIB compare
CSW01_01485 -4.3 -2.9 transcriptional regulator compare
CSW01_18350 -4.1 -1.8 cell division protein DedD compare
CSW01_13285 -4.1 -2.8 ribulose-phosphate 3-epimerase compare
CSW01_12365 -4.0 -2.8 inorganic phosphate transporter compare
CSW01_11730 -4.0 -2.6 2-dehydropantoate 2-reductase compare
CSW01_10255 -3.7 -2.2 cytochrome c-type biogenesis protein CcmH compare
CSW01_03210 -3.6 -13.9 iron ABC transporter permease compare
CSW01_11555 -3.6 -4.9 riboflavin synthase compare
CSW01_11560 -3.6 -5.5 riboflavin biosynthesis protein RibD compare
CSW01_04285 -3.6 -3.2 toxin coregulated pilus biosynthesis protein R compare
CSW01_00560 -3.5 -8.9 DNA polymerase I compare
CSW01_03325 -3.5 -4.7 porin compare
CSW01_11670 -3.4 -2.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_00015 -3.4 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_12005 -3.4 -4.7 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_06380 -3.4 -2.3 GTP cyclohydrolase II compare
CSW01_03215 -3.4 -13.3 ABC transporter ATP-binding protein compare
CSW01_09525 -3.3 -1.8 DNA translocase FtsK compare
CSW01_17585 -3.3 -1.0 periplasmic nitrate reductase electron transfer subunit compare
CSW01_04820 -3.2 -11.4 serine hydroxymethyltransferase compare
CSW01_07475 -3.2 -1.6 glutaredoxin family protein compare
CSW01_14055 -3.2 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_18525 -3.1 -1.8 integrase compare
CSW01_03410 -3.1 -3.4 polyribonucleotide nucleotidyltransferase compare
CSW01_09250 -3.1 -2.1 crossover junction endodeoxyribonuclease RuvC compare
CSW01_18635 -3.0 -6.6 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_12320 -3.0 -5.2 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_03205 -3.0 -8.9 iron ABC transporter substrate-binding protein compare
CSW01_19435 -2.8 -2.3 hypothetical protein compare
CSW01_13805 -2.7 -6.6 Hsp33 family molecular chaperone HslO compare
CSW01_05575 -2.7 -4.1 phosphate acetyltransferase compare
CSW01_11785 -2.6 -2.6 exonuclease V subunit gamma compare
CSW01_02490 -2.6 -10.2 glutathione synthetase compare
CSW01_03785 -2.5 -4.3 phosphate ABC transporter permease compare
CSW01_05265 -2.5 -1.5 methionine--tRNA ligase compare
CSW01_05165 -2.4 -1.5 electron transport complex subunit RsxC compare
CSW01_01125 -2.4 -8.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_03980 -2.3 -6.5 IMP dehydrogenase compare
CSW01_13445 -2.1 -2.6 elongation factor P compare
CSW01_10280 -2.1 -5.5 heme exporter protein C compare
CSW01_11240 -2.1 -2.8 flagella basal body P-ring formation protein FlgA compare
CSW01_01875 -2.1 -2.9 hypothetical protein compare
CSW01_02970 -2.1 -8.3 glutamate--cysteine ligase compare
CSW01_13420 -2.0 -3.1 elongation factor P--(R)-beta-lysine ligase compare
CSW01_06035 -2.0 -1.2 hypothetical protein compare
CSW01_13635 -2.0 -8.3 thiol:disulfide interchange protein DsbD compare
CSW01_00460 -2.0 -3.2 twin-arginine translocase subunit TatA compare
CSW01_02875 -2.0 -4.3 DNA recombination/repair protein RecA compare
CSW01_11220 -2.0 -2.9 flagellar basal body rod protein FlgC compare
CSW01_10375 -1.9 -2.7 HIT family protein compare
CSW01_03880 -1.9 -1.2 HTH-type transcriptional regulator IscR compare
CSW01_00540 -1.9 -1.4 hypothetical protein compare
CSW01_02755 -1.9 -1.8 glutamyl-tRNA amidotransferase compare
CSW01_06835 -1.9 -2.8 BAX inhibitor protein compare
CSW01_05730 -1.9 -10.1 inosine/guanosine kinase compare
CSW01_11780 -1.9 -4.2 exodeoxyribonuclease V subunit beta compare
CSW01_12735 -1.9 -4.4 RidA family protein compare
CSW01_00500 -1.9 -10.6 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_10270 -1.8 -2.8 cytochrome c-type biogenesis protein CcmE compare
CSW01_02890 -1.8 -7.1 aspartate kinase compare
CSW01_04390 -1.8 -2.2 outer membrane protein assembly factor BamE compare
CSW01_10630 -1.8 -2.3 flagella biosynthesis chaperone FliJ compare
CSW01_10290 -1.8 -2.9 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_10265 -1.8 -5.0 c-type cytochrome biogenesis protein CcmF compare
CSW01_10875 -1.8 -4.8 redox-regulated ATPase YchF compare
CSW01_13450 -1.8 -2.8 EF-P beta-lysylation protein EpmB compare
CSW01_11215 -1.8 -5.3 flagellar hook assembly protein FlgD compare
CSW01_13810 -1.8 -5.9 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_16130 -1.7 -0.8 acetyltransferase compare
CSW01_01965 -1.7 -3.4 glucose-6-phosphate isomerase compare
CSW01_02450 -1.7 -6.2 pyrroline-5-carboxylate reductase compare
CSW01_01915 -1.7 -2.2 bacterioferritin-associated ferredoxin compare
CSW01_05065 -1.7 -5.3 N-acetylglucosamine repressor compare
CSW01_05580 -1.7 -6.0 acetate kinase compare
CSW01_02455 -1.6 -4.5 YggS family pyridoxal phosphate enzyme compare
CSW01_07750 -1.6 -0.8 hypothetical protein compare
CSW01_05990 -1.6 -3.4 agglutination protein compare
CSW01_10260 -1.6 -1.8 thiol:disulfide interchange protein DsbE compare
CSW01_00470 -1.6 -3.8 twin-arginine translocase subunit TatC compare
CSW01_16835 -1.6 -3.4 catabolite repressor/activator compare
CSW01_10145 -1.5 -3.8 ribonuclease E compare
CSW01_12885 -1.5 -5.2 fructose 1,6-bisphosphatase compare
CSW01_00650 -1.5 -5.9 tyrosine recombinase XerC compare
CSW01_01490 -1.5 -2.3 Fis family transcriptional regulator compare
CSW01_12680 -1.4 -4.1 cytosol aminopeptidase compare
CSW01_10565 -1.4 -2.2 hypothetical protein compare
CSW01_11920 -1.4 -5.2 NupC/NupG family nucleoside CNT transporter compare
CSW01_14815 -1.4 -2.0 hypothetical protein compare
CSW01_03695 -1.4 -4.1 ribosomal large subunit pseudouridine synthase D compare
CSW01_14085 -1.4 -2.2 transcriptional regulator compare
CSW01_19125 -1.4 -1.5 branched-chain amino acid ABC transporter compare
CSW01_06400 -1.4 -3.8 DUF1513 domain-containing protein compare
CSW01_07135 -1.4 -2.8 chromosome partitioning protein ParA compare
CSW01_17495 -1.3 -3.0 glycerol-3-phosphate dehydrogenase compare
CSW01_12130 -1.3 -2.1 DUF721 domain-containing protein compare
CSW01_13305 -1.3 -1.9 shikimate kinase compare
CSW01_11225 -1.3 -4.2 flagellar basal body rod protein FlgB compare
CSW01_10285 -1.3 -1.5 heme exporter protein CcmB compare
CSW01_08355 -1.3 -1.7 heat-shock protein HslJ compare
CSW01_14235 -1.3 -1.6 copper chaperone PCu(A)C compare
CSW01_09720 -1.3 -1.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_05195 -1.3 -3.6 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_00005 -1.3 -1.5 hypothetical protein compare
CSW01_10445 -1.3 -1.7 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_12250 -1.3 -4.1 site-specific tyrosine recombinase XerD compare
CSW01_02530 -1.3 -4.6 D-erythrose-4-phosphate dehydrogenase compare
CSW01_00465 -1.3 -1.1 twin-arginine translocase subunit TatB compare
CSW01_17325 -1.3 -3.8 transaldolase compare
CSW01_01820 -1.2 -4.1 N-acetylmuramoyl-L-alanine amidase compare
CSW01_09465 -1.2 -3.4 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_16655 -1.2 -1.6 hypothetical protein compare
CSW01_18835 -1.2 -1.5 acyl-CoA thioesterase compare
CSW01_06390 -1.2 -3.4 thiol oxidoreductase compare
CSW01_07890 -1.2 -1.2 hypothetical protein compare
CSW01_06825 -1.2 -1.1 acylphosphatase compare
CSW01_05310 -1.1 -2.5 DUF3379 domain-containing protein compare
CSW01_00380 -1.1 -0.8 hypothetical protein compare
CSW01_03055 -1.1 -2.2 cytochrome c1 compare
CSW01_13675 -1.1 -2.6 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_07025 -1.1 -4.0 hypothetical protein compare
CSW01_18830 -1.1 -2.6 DeoR/GlpR family transcriptional regulator compare
CSW01_18335 -1.1 -2.8 sugar O-acetyltransferase compare
CSW01_03045 -1.1 -1.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_08625 -1.1 -2.8 chromosome partition protein MukE compare
CSW01_04375 -1.1 -2.0 SsrA-binding protein compare
CSW01_04080 -1.1 -3.6 hypothetical protein compare
CSW01_17200 -1.1 -1.1 DUF333 domain-containing protein compare
CSW01_04940 -1.1 -0.7 hypothetical protein compare
CSW01_19010 -1.1 -1.9 methyl-accepting chemotaxis protein compare
CSW01_08705 -1.0 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_11745 -1.0 -1.9 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_04910 -1.0 -2.0 PhoH family protein compare
CSW01_07150 -1.0 -1.4 spermidine/putrescine ABC transporter permease PotC compare
CSW01_16205 -1.0 -1.3 DUF3465 domain-containing protein compare
CSW01_04360 -1.0 -1.8 IS5/IS1182 family transposase compare
CSW01_05125 -1.0 -0.8 ribonuclease T compare
CSW01_11190 -1.0 -3.6 flagellar P-ring protein compare
CSW01_11535 -1.0 -2.4 thiamine-phosphate kinase compare
CSW01_12255 -1.0 -2.2 flavodoxin FldB compare
CSW01_07910 -1.0 -1.6 ASCH domain-containing protein compare
CSW01_10340 -1.0 -2.3 MinD/ParA family protein compare
CSW01_04845 -1.0 -3.4 D-alanyl-D-alanine carboxypeptidase compare
CSW01_17835 -1.0 -0.9 hypothetical protein compare
CSW01_05490 -1.0 -3.7 L-threonylcarbamoyladenylate synthase compare
CSW01_16395 -1.0 -0.7 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_17395 -1.0 -1.6 hypothetical protein compare
CSW01_03030 -1.0 -4.0 cell division protein ZapE compare
CSW01_00570 -1.0 -1.9 cytochrome c4 compare
CSW01_00180 -0.9 -4.2 cytochrome c oxidase accessory protein CcoG compare
CSW01_06990 -0.9 -1.5 QacE family quaternary ammonium compound efflux SMR transporter compare
CSW01_05985 -0.9 -2.7 thioredoxin-disulfide reductase compare
CSW01_08620 -0.9 -4.9 chromosome partition protein MukB compare
CSW01_10140 -0.9 -2.4 hypothetical protein compare
CSW01_08730 -0.9 -1.6 phage-shock protein compare
CSW01_12465 -0.9 -2.9 elongation factor 4 compare
CSW01_04495 -0.9 -1.4 hypothetical protein compare
CSW01_09090 -0.9 -1.9 NYN domain-containing protein compare
CSW01_15810 -0.9 -0.9 hypothetical protein compare
CSW01_08350 -0.9 -1.9 DUF1289 domain-containing protein compare
CSW01_10245 -0.9 -1.3 ABC transporter compare
CSW01_06395 -0.9 -3.5 iron-regulated protein A compare
CSW01_05425 -0.9 -2.9 hypothetical protein compare
CSW01_16905 -0.9 -2.0 DedA family protein compare
CSW01_15305 -0.9 -2.3 XRE family transcriptional regulator compare
CSW01_08015 -0.9 -1.7 ABC transporter substrate-binding protein compare
CSW01_03855 -0.9 -1.3 preprotein translocase subunit YajC compare
CSW01_18775 -0.9 -1.6 hypothetical protein compare
CSW01_00095 -0.9 -1.0 hypothetical protein compare
CSW01_05020 -0.9 -1.6 regulatory protein ToxS compare
CSW01_05935 -0.9 -2.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
CSW01_10075 -0.8 -2.6 endolytic transglycosylase MltG compare
CSW01_01240 -0.8 -3.2 lipopolysaccharide biosynthesis protein compare
CSW01_09990 -0.8 -0.7 hypothetical protein compare
CSW01_03845 -0.8 -1.1 hypothetical protein compare
CSW01_01555 -0.8 -4.2 ATP-dependent RNA helicase RhlB compare
CSW01_18710 -0.8 -2.4 hemin ABC transporter substrate-binding protein compare
CSW01_11210 -0.8 -3.1 flagellar hook protein FlgE compare
CSW01_18970 -0.8 -2.0 DUF2850 domain-containing protein compare
CSW01_02700 -0.8 -3.0 hypothetical protein compare
CSW01_07090 -0.8 -1.2 type VI secretion system tube protein Hcp compare
CSW01_09420 -0.8 -1.1 DUF2062 domain-containing protein compare
CSW01_07755 -0.8 -2.2 hypothetical protein compare
CSW01_03760 -0.8 -2.8 phosphate regulon transcriptional regulatory protein PhoB compare
CSW01_03195 -0.8 -2.0 transcriptional regulator compare
CSW01_11410 -0.8 -1.2 nitrogen regulatory protein P-II compare
CSW01_12610 -0.8 -1.0 3-isopropylmalate dehydratase small subunit compare
CSW01_11195 -0.8 -1.6 flagellar L-ring protein compare
CSW01_09375 -0.8 -1.4 YfbU family protein compare
CSW01_06335 -0.8 -2.1 (2Fe-2S)-binding protein compare
CSW01_07235 -0.8 -1.1 hypothetical protein compare
CSW01_09285 -0.8 -2.7 porin compare
CSW01_09920 -0.8 -0.7 chromosome partitioning protein ParA compare
CSW01_09560 -0.8 -1.8 orotidine-5'-phosphate decarboxylase compare
CSW01_15865 -0.8 -0.8 DUF3465 domain-containing protein compare
CSW01_16665 -0.8 -1.4 nucleotide pyrophosphohydrolase compare
CSW01_14280 -0.8 -0.9 DUF3302 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms