Experiment set4IT085 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_4.1_MOI_rep2

200 most detrimental genes:

  gene name fitness t score description  
CSW01_01275 +5.1 49.4 phosphomannomutase/phosphoglucomutase compare
CSW01_01325 +5.1 21.2 acetyltransferase compare
CSW01_01315 +5.0 39.6 NAD-dependent alcohol dehydrogenase compare
CSW01_01280 +5.0 47.6 GDP-mannose 4,6-dehydratase compare
CSW01_01290 +4.9 42.8 rfbG protein compare
CSW01_01285 +4.9 43.1 perosamine synthetase compare
CSW01_01320 +4.9 43.3 acyl-CoA reductase compare
CSW01_01310 +4.9 46.7 long-chain fatty acid--CoA ligase compare
CSW01_01345 +4.8 44.9 glycosyl transferase family 1 compare
CSW01_01250 +4.7 43.7 polymerase compare
CSW01_01305 +4.7 29.0 acyl carrier protein compare
CSW01_01360 +4.6 26.9 sugar transferase compare
CSW01_01295 +4.6 16.9 ABC transporter permease compare
CSW01_01350 +4.5 42.4 polysaccharide biosynthesis protein compare
CSW01_01300 +4.5 22.9 sugar ABC transporter compare
CSW01_01185 +4.2 32.7 ADP-heptose--LPS heptosyltransferase compare
CSW01_01260 +4.1 29.3 polysaccharide deacetylase compare
CSW01_01270 +4.1 17.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
CSW01_09145 +3.5 21.8 PTS fructose transporter subunit IIA compare
CSW01_01245 +3.4 16.6 lipopolysaccharide heptosyltransferase II compare
CSW01_01265 +3.0 12.3 ADP-L-glycero-D-mannoheptose-6-epimerase compare
CSW01_01190 +2.7 17.4 glycosyltransferase family 2 protein compare
CSW01_01390 +2.4 19.2 mannose-6-phosphate isomerase, class I compare
CSW01_04650 +2.3 4.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
CSW01_08465 +2.2 6.5 ABC transporter ATP-binding protein compare
CSW01_04935 +2.2 2.9 phosphocarrier protein HPr compare
CSW01_03815 +2.2 6.4 peroxidase compare
CSW01_12340 +2.1 4.7 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase compare
CSW01_06025 +2.0 12.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CSW01_01195 +1.9 6.3 ADP-heptose--LPS heptosyltransferase I compare
CSW01_08450 +1.8 4.3 antimicrobial peptide ABC transporter permease SapB compare
CSW01_15730 +1.8 2.0 VOC family protein compare
CSW01_08445 +1.8 7.6 ABC transporter substrate-binding protein compare
CSW01_01830 +1.7 5.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CSW01_01255 +1.6 5.1 acyltransferase compare
CSW01_11700 +1.6 3.0 hypothetical protein compare
CSW01_10155 +1.6 2.3 C4-dicarboxylate ABC transporter compare
CSW01_15000 +1.5 2.6 rfbP protein compare
CSW01_18285 +1.4 3.0 4a-hydroxytetrahydrobiopterin dehydratase compare
CSW01_16310 +1.3 1.7 DUF3709 domain-containing protein compare
CSW01_00620 +1.3 5.4 class I adenylate cyclase compare
CSW01_12480 +1.3 2.2 sigma-E factor negative regulatory protein RseA compare
CSW01_01425 +1.3 1.4 phosphoribosylamine--glycine ligase compare
CSW01_14125 +1.3 5.0 1,4-alpha-glucan branching enzyme compare
CSW01_15430 +1.2 1.7 hypothetical protein compare
CSW01_05180 +1.2 1.6 tRNA-Asn compare
CSW01_07835 +1.1 5.7 catalase-peroxidase compare
CSW01_03470 +1.1 6.8 peptide chain release factor 3 compare
CSW01_02835 +1.1 5.4 RNA polymerase sigma factor RpoS compare
CSW01_11580 +1.1 3.6 sigma factor-binding protein Crl compare
CSW01_00215 +1.1 7.2 potassium uptake protein TrkH compare
CSW01_05015 +1.1 3.5 selenoprotein W-like protein compare
CSW01_06075 +1.1 2.9 DUF3581 domain-containing protein compare
CSW01_12360 +1.1 1.7 TIGR00153 family protein compare
CSW01_11275 +1.1 3.2 NADPH-dependent ferric siderophore reductase compare
CSW01_18205 +1.0 3.4 dehydratase compare
CSW01_02390 +1.0 1.7 tRNA-Thr compare
CSW01_03095 +1.0 4.1 hypothetical protein compare
CSW01_04420 +1.0 3.3 prepilin-type cleavage/methylation domain-containing protein compare
CSW01_08175 +1.0 2.6 hypothetical protein compare
CSW01_01405 +1.0 1.3 DNA-binding protein HU-alpha compare
CSW01_10485 +1.0 1.3 DUF2788 domain-containing protein compare
CSW01_18020 +1.0 2.3 DEAD/DEAH box helicase compare
CSW01_10355 +1.0 3.1 phosphohistidine phosphatase SixA compare
CSW01_03025 +0.9 2.3 hypothetical protein compare
CSW01_15310 +0.9 1.9 exoribonuclease R compare
CSW01_10465 +0.9 2.0 DUF1853 domain-containing protein compare
CSW01_06195 +0.9 1.2 hypothetical protein compare
CSW01_02440 +0.9 2.3 YggU family protein compare
CSW01_17515 +0.9 1.7 beta-phosphoglucomutase family hydrolase compare
CSW01_03155 +0.9 3.5 RNA polymerase-binding transcription factor DksA compare
CSW01_11710 +0.9 2.6 transcriptional regulator compare
CSW01_15275 +0.9 2.2 hypothetical protein compare
CSW01_05380 +0.9 1.4 YkgJ family cysteine cluster protein compare
CSW01_19350 +0.9 3.3 sulfite exporter TauE/SafE family protein compare
CSW01_15860 +0.9 1.4 DUF645 domain-containing protein compare
CSW01_10295 +0.8 1.2 DUF2802 domain-containing protein compare
CSW01_07005 +0.8 1.7 hypothetical protein compare
CSW01_01420 +0.8 5.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
CSW01_06780 +0.8 2.9 homogentisate 1,2-dioxygenase compare
CSW01_03975 +0.8 2.6 exodeoxyribonuclease VII large subunit compare
CSW01_13950 +0.8 1.3 hypothetical protein compare
CSW01_05260 +0.8 2.1 hypothetical protein compare
CSW01_17780 +0.8 1.3 hypothetical protein compare
CSW01_09495 +0.8 1.4 histidine triad nucleotide-binding protein compare
CSW01_14405 +0.8 3.2 hypothetical protein compare
CSW01_19555 +0.8 2.2 response regulator compare
CSW01_07580 +0.7 0.8 hypothetical protein compare
CSW01_16690 +0.7 0.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_04850 +0.7 2.2 septal ring lytic transglycosylase RlpA compare
CSW01_05240 +0.7 0.9 CBS domain-containing protein compare
CSW01_12780 +0.7 1.3 hypothetical protein compare
CSW01_08345 +0.7 1.4 hypothetical protein compare
CSW01_17050 +0.7 3.3 histidine kinase compare
CSW01_09915 +0.7 2.9 starvation-inducible protein compare
CSW01_19545 +0.7 2.0 chemotaxis protein CheW compare
CSW01_11025 +0.7 1.9 DUF2597 domain-containing protein compare
CSW01_08685 +0.7 2.0 glycogen synthase compare
CSW01_08980 +0.7 1.9 hypothetical protein compare
CSW01_02255 +0.7 3.1 C4-dicarboxylate ABC transporter substrate-binding protein compare
CSW01_16895 +0.7 1.7 DNA-binding response regulator compare
CSW01_01855 +0.7 1.0 DUF2065 domain-containing protein compare
CSW01_10390 +0.7 1.9 ferrous iron transport protein A compare
CSW01_17410 +0.7 1.2 transporter compare
CSW01_02790 +0.7 1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
CSW01_04465 +0.7 0.5 hypothetical protein compare
CSW01_08190 +0.7 3.8 ABC transporter permease compare
CSW01_01800 +0.7 0.7 tRNA-Met compare
CSW01_18595 +0.7 2.1 VOC family protein compare
CSW01_14750 +0.7 3.2 peptide deformylase compare
CSW01_14340 +0.7 2.6 S9 family peptidase compare
CSW01_04915 +0.7 3.2 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
CSW01_09875 +0.6 1.9 5'-deoxynucleotidase compare
CSW01_12330 +0.6 3.3 ADP-ribose diphosphatase compare
CSW01_16505 +0.6 2.1 DUF645 domain-containing protein compare
CSW01_16140 +0.6 1.7 DUF645 domain-containing protein compare
CSW01_10085 +0.6 2.8 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
CSW01_17080 +0.6 1.0 DUF3319 domain-containing protein compare
CSW01_18890 +0.6 1.7 peptidyl-prolyl cis-trans isomerase compare
CSW01_07620 +0.6 1.3 DUF3305 domain-containing protein compare
CSW01_00415 +0.6 0.8 hypothetical protein compare
CSW01_14180 +0.6 2.9 hypothetical protein compare
CSW01_04865 +0.6 0.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CSW01_09515 +0.6 3.4 Na+/H+ antiporter NhaB compare
CSW01_09260 +0.6 2.4 peptidylprolyl isomerase compare
CSW01_06725 +0.6 1.8 tripartite tricarboxylate transporter substrate-binding protein compare
CSW01_14435 +0.6 3.4 MFS transporter compare
CSW01_10730 +0.6 1.3 ArsC family reductase compare
CSW01_11695 +0.6 2.5 peptidyl-prolyl cis-trans isomerase compare
CSW01_07960 +0.6 1.4 DUF417 domain-containing protein compare
CSW01_16735 +0.6 0.7 DUF4160 domain-containing protein compare
CSW01_06255 +0.6 1.6 hypothetical protein compare
CSW01_08560 +0.6 1.9 acyl-CoA thioester hydrolase YciA compare
CSW01_08330 +0.6 2.1 hypothetical protein compare
CSW01_13640 +0.6 2.2 DNA-binding response regulator compare
CSW01_10760 +0.6 2.0 glycine cleavage system transcriptional regulator compare
CSW01_00710 +0.6 1.4 DUF4145 domain-containing protein compare
CSW01_08990 +0.6 1.6 glyoxalase compare
CSW01_11000 +0.6 1.1 hypothetical protein compare
CSW01_04570 +0.6 2.2 exodeoxyribonuclease 7 small subunit compare
CSW01_10325 +0.6 2.0 protein phosphatase CheZ compare
CSW01_00805 +0.6 3.4 RNA-binding protein compare
CSW01_04020 +0.6 3.0 vibriobactin biosynthesis amide synthase VibH compare
CSW01_06865 +0.6 1.9 Cof-type HAD-IIB family hydrolase compare
CSW01_08260 +0.6 1.4 hypothetical protein compare
CSW01_16240 +0.6 1.7 hypothetical protein compare
CSW01_06310 +0.6 1.7 transcriptional regulator compare
CSW01_10135 +0.6 1.2 hypothetical protein compare
CSW01_07685 +0.6 1.8 DUF2960 domain-containing protein compare
CSW01_08050 +0.6 1.8 chemotaxis protein CheV compare
CSW01_14470 +0.6 1.6 DUF134 domain-containing protein compare
CSW01_06945 +0.6 0.9 hypothetical protein compare
CSW01_08955 +0.6 1.4 transcriptional regulator compare
CSW01_14045 +0.6 2.1 ParA family protein compare
CSW01_08545 +0.6 0.9 YdcF family protein compare
CSW01_12820 +0.6 1.7 ribosome hibernation promoting factor compare
CSW01_06090 +0.6 2.1 formimidoylglutamase compare
CSW01_05785 +0.6 1.7 23S rRNA pseudouridine synthase E compare
CSW01_02260 +0.6 0.6 C4-dicarboxylate ABC transporter substrate-binding protein compare
CSW01_18230 +0.6 2.0 agmatinase compare
CSW01_16675 +0.6 1.9 N-acetyltransferase compare
CSW01_17070 +0.6 1.0 YoaH family protein compare
CSW01_17535 +0.6 2.7 L-serine ammonia-lyase compare
CSW01_14420 +0.5 1.8 peptidase M23 compare
CSW01_03820 +0.5 2.5 hydrogen peroxide-inducible genes activator compare
CSW01_06925 +0.5 0.9 hypothetical protein compare
CSW01_05280 +0.5 2.4 uridine kinase compare
CSW01_09605 +0.5 1.7 endopeptidase La compare
CSW01_16405 +0.5 0.8 hemagglutinin compare
CSW01_17135 +0.5 1.1 hypothetical protein compare
CSW01_17000 +0.5 0.8 DUF3332 domain-containing protein compare
CSW01_05250 +0.5 2.8 zinc/cadmium/mercury/lead-transporting ATPase compare
CSW01_09320 +0.5 1.6 amino acid ABC transporter permease compare
CSW01_05370 +0.5 0.8 YbaB/EbfC family nucleoid-associated protein compare
CSW01_11630 +0.5 1.7 DUF2884 domain-containing protein compare
CSW01_17030 +0.5 1.3 competence protein ComFB compare
CSW01_14555 +0.5 2.2 type VI secretion system contractile sheath large subunit compare
CSW01_10720 +0.5 2.0 DUF2956 domain-containing protein compare
CSW01_00780 +0.5 1.2 hypothetical protein compare
CSW01_18705 +0.5 1.4 biopolymer transporter exbD1 compare
CSW01_03105 +0.5 2.2 hypoxanthine phosphoribosyltransferase compare
CSW01_10705 +0.5 2.4 flagellin E compare
CSW01_06520 +0.5 2.0 3'-5' exonuclease compare
CSW01_05495 +0.5 1.3 histidine kinase compare
CSW01_14220 +0.5 1.6 HDOD domain-containing protein compare
CSW01_08125 +0.5 0.7 glutaredoxin family protein compare
CSW01_00520 +0.5 1.1 flagellar basal body-associated protein FliL compare
CSW01_10765 +0.5 1.5 thioredoxin-dependent thiol peroxidase compare
CSW01_08995 +0.5 0.9 transcriptional regulator compare
CSW01_09640 +0.5 3.0 C4-dicarboxylate ABC transporter permease compare
CSW01_08720 +0.5 0.7 arginyltransferase compare
CSW01_14860 +0.5 1.5 DUF58 domain-containing protein compare
CSW01_18250 +0.5 1.2 co-chaperone GroES compare
CSW01_09060 +0.5 1.5 DUF2787 domain-containing protein compare
CSW01_07920 +0.5 1.1 lipid A modification system glycine carrier protein AlmF compare
CSW01_04165 +0.5 2.2 MFS transporter compare
CSW01_03120 +0.5 1.5 ABC transporter ATP-binding protein compare
CSW01_06175 +0.5 1.8 N-acetyltransferase compare
CSW01_07020 +0.5 2.0 Chemotaxis protein methyltransferase 2 compare
CSW01_08920 +0.5 1.7 C4-dicarboxylate ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms