Experiment set4IT085 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06680 -7.8 -7.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03015 -7.3 -7.1 GTP 3' 8-cyclase MoaA compare
MMP_RS06700 -7.1 -8.4 hypothetical protein compare
MMP_RS01175 -6.9 -3.2 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS04605 -6.8 -3.5 cobalt ECF transporter T component CbiQ compare
MMP_RS06345 -6.7 -7.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06715 -6.7 -12.9 cache domain-containing protein compare
MMP_RS01500 -6.7 -2.2 CBS domain-containing protein compare
MMP_RS06685 -6.6 -9.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06720 -6.4 -5.6 response regulator transcription factor compare
MMP_RS04615 -6.4 -2.9 PDGLE domain-containing protein compare
MMP_RS06705 -6.3 -5.9 formate/nitrite transporter family protein compare
MMP_RS06285 -6.0 -2.3 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06350 -6.0 -5.1 HesA/MoeB/ThiF family protein compare
MMP_RS02135 -6.0 -4.1 DUF5612 domain-containing protein compare
MMP_RS08100 -5.9 -5.3 8-amino-7-oxononanoate synthase compare
MMP_RS07445 -5.8 -6.9 helix-turn-helix domain-containing protein compare
MMP_RS08440 -5.7 -2.4 cell division protein SepF compare
MMP_RS08095 -5.7 -6.6 dethiobiotin synthase compare
MMP_RS00130 -5.6 -1.1 nickel-responsive transcriptional regulator NikR compare
MMP_RS00945 -5.6 -1.1 PadR family transcriptional regulator compare
MMP_RS03025 -5.5 -3.8 molybdenum cofactor guanylyltransferase compare
MMP_RS06295 -5.4 -5.3 methanogenesis marker 14 protein compare
MMP_RS05515 -5.4 -4.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06370 -5.4 -3.9 biotin synthase BioB compare
MMP_RS08645 -5.4 -6.8 UPF0179 family protein compare
MMP_RS05930 -5.3 -2.3 3-isopropylmalate dehydratase large subunit compare
MMP_RS08105 -5.3 -5.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS04585 -5.2 -8.7 AIR synthase related protein compare
MMP_RS06355 -5.1 -2.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06625 -5.1 -2.0 DNA primase compare
MMP_RS09020 -5.1 -1.7 hypothetical protein compare
MMP_RS06475 -5.1 -3.4 FAD-dependent oxidoreductase compare
MMP_RS08715 -5.0 -1.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04620 -5.0 -10.7 cobalt transporter CbiM compare
MMP_RS04685 -5.0 -2.5 DUF126 domain-containing protein compare
MMP_RS01265 -4.9 -2.6 hypothetical protein compare
MMP_RS01020 -4.9 -0.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS04500 -4.8 -14.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS03445 -4.8 -0.9 methanogenesis marker 17 protein compare
MMP_RS03580 -4.8 -2.8 signal recognition particle-docking protein FtsY compare
MMP_RS05845 -4.7 -1.8 tRNA-intron lyase compare
MMP_RS03640 -4.7 -3.4 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS04775 -4.6 -2.6 adenosylhomocysteinase compare
MMP_RS06885 -4.6 -2.5 50S ribosome-binding GTPase compare
MMP_RS02280 -4.5 -0.9 DUF211 domain-containing protein compare
MMP_RS01830 -4.5 -1.2 tRNA-Val compare
MMP_RS02195 -4.5 -3.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03960 -4.4 -0.9 hypothetical protein compare
MMP_RS07645 -4.4 -4.2 aldehyde dehydrogenase family protein compare
MMP_RS08650 -4.4 -2.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01225 -4.4 -4.8 DUF5379 domain-containing protein compare
MMP_RS08460 -4.4 -2.1 proteasome-activating nucleotidase compare
MMP_RS03035 -4.4 -3.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07635 -4.3 -6.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07730 -4.3 -1.8 pyruvate synthase subunit beta compare
MMP_RS01325 -4.1 -2.0 dihydroneopterin aldolase family protein compare
MMP_RS01005 -4.1 -1.1 riboflavin synthase compare
MMP_RS04780 -4.0 -2.2 ribonuclease P compare
MMP_RS07605 -4.0 -2.3 diadenylate cyclase compare
MMP_RS03315 -4.0 -1.3 ferrous iron transport protein A compare
MMP_RS02240 -4.0 -3.2 methanogenesis marker 7 protein compare
MMP_RS03205 -3.9 -1.0 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS05265 -3.8 -1.8 2-isopropylmalate synthase compare
MMP_RS05100 -3.8 -12.6 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07860 -3.8 -0.7 hypothetical protein compare
MMP_RS06230 -3.8 -1.9 helix-turn-helix domain-containing protein compare
MMP_RS02900 -3.8 -0.7 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02345 -3.8 -3.1 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS05080 -3.8 -8.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS06975 -3.8 -1.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS01755 -3.8 -1.0 DUF2097 domain-containing protein compare
MMP_RS05095 -3.8 -4.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS07005 -3.7 -0.7 4Fe-4S binding protein compare
MMP_RS00300 -3.7 -0.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS08790 -3.7 -1.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS08820 -3.7 -4.4 hypothetical protein compare
MMP_RS06400 -3.7 -1.6 4Fe-4S binding protein compare
MMP_RS01385 -3.6 -0.7 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01795 -3.6 -1.6 methanogenesis marker 6 protein compare
MMP_RS02190 -3.6 -2.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS07755 -3.6 -1.0 DUF555 domain-containing protein compare
MMP_RS06940 -3.6 -3.2 polyprenyl diphosphate synthase compare
MMP_RS08635 -3.6 -1.7 UbiA family prenyltransferase compare
MMP_RS02875 -3.6 -6.7 chorismate pyruvate-lyase family protein compare
MMP_RS03475 -3.5 -0.7 hypothetical protein compare
MMP_RS05090 -3.5 -6.1 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS07545 -3.4 -0.9 HTH domain-containing protein compare
MMP_RS02145 -3.4 -6.9 winged helix-turn-helix transcriptional regulator compare
MMP_RS07525 -3.4 -4.8 4Fe-4S binding protein compare
MMP_RS06630 -3.4 -0.9 UPF0058 family protein compare
MMP_RS06315 -3.3 -0.9 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06270 -3.3 -5.2 TIGR00300 family protein compare
MMP_RS02355 -3.2 -1.9 30S ribosomal protein S27ae compare
MMP_RS06730 -3.2 -1.8 phosphopantothenate/pantothenate synthetase compare
MMP_RS07600 -3.2 -2.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01700 -3.2 -0.9 dihydroxy-acid dehydratase compare
MMP_RS03155 -3.2 -5.5 precorrin-6A reductase compare
MMP_RS01610 -3.2 -2.4 hypothetical protein compare
MMP_RS07195 -3.2 -7.3 M20 family metallo-hydrolase compare
MMP_RS00335 -3.2 -3.3 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS05055 -3.2 -8.4 DUF166 domain-containing protein compare
MMP_RS01380 -3.2 -4.3 PHP domain-containing protein compare
MMP_RS07385 -3.2 -2.5 protein translocase SEC61 complex subunit gamma compare
MMP_RS02340 -3.1 -1.5 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07580 -3.1 -2.5 DUF356 domain-containing protein compare
MMP_RS04720 -3.1 -2.4 DedA family protein compare
MMP_RS05075 -3.1 -9.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS01800 -3.1 -3.4 TIGR00303 family protein compare
MMP_RS08745 -3.1 -5.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07365 -3.0 -6.9 2-phosphoglycerate kinase compare
MMP_RS08435 -3.0 -1.9 Era-like GTP-binding protein compare
MMP_RS00115 -3.0 -8.4 radical SAM protein compare
MMP_RS08300 -3.0 -1.0 metal-sulfur cluster assembly factor compare
MMP_RS00695 -2.9 -0.8 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS00305 -2.9 -1.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS00895 -2.9 -2.5 hypothetical protein compare
MMP_RS04890 -2.8 -0.8 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS03400 -2.8 -2.2 archease compare
MMP_RS01985 -2.8 -2.3 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS05060 -2.8 -7.3 AAA family ATPase compare
MMP_RS05085 -2.8 -5.1 AAA family ATPase compare
MMP_RS07735 -2.8 -0.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS02110 -2.8 -1.5 hypothetical protein compare
MMP_RS05440 -2.7 -5.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS03700 -2.7 -6.4 sodium:proton antiporter compare
MMP_RS07380 -2.7 -1.7 transcription elongation factor Spt5 compare
MMP_RS06120 -2.6 -1.5 UPF0147 family protein compare
MMP_RS08210 -2.6 -1.7 phosphatidylglycerophosphatase A compare
MMP_RS08720 -2.6 -1.3 4Fe-4S binding protein compare
MMP_RS01250 -2.6 -2.1 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS01220 -2.6 -4.8 hypothetical protein compare
MMP_RS07630 -2.6 -1.2 ATP-binding cassette domain-containing protein compare
MMP_RS06340 -2.6 -3.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS05345 -2.6 -5.8 hypothetical protein compare
MMP_RS07390 -2.5 -1.8 cell division protein FtsZ compare
MMP_RS06105 -2.5 -6.1 hydrogenase maturation peptidase HycI compare
MMP_RS05555 -2.5 -0.9 DUF4040 domain-containing protein compare
MMP_RS03600 -2.5 -1.6 triose-phosphate isomerase compare
MMP_RS00060 -2.5 -1.1 3-dehydroquinate synthase II compare
MMP_RS06215 -2.5 -2.1 30S ribosomal protein S6e compare
MMP_RS05875 -2.4 -2.1 hydroxyethylthiazole kinase compare
MMP_RS01545 -2.4 -0.8 CBS domain-containing protein compare
MMP_RS01475 -2.4 -4.2 phosphosulfolactate synthase compare
MMP_RS01365 -2.4 -2.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS02010 -2.4 -5.7 PHP domain-containing protein compare
MMP_RS00325 -2.3 -1.1 RNA-binding protein compare
MMP_RS06020 -2.3 -2.6 archaeoflavoprotein AfpA compare
MMP_RS07955 -2.3 -3.2 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS07575 -2.3 -2.0 RNA ligase partner protein compare
MMP_RS01725 -2.3 -3.2 class I SAM-dependent methyltransferase family protein compare
MMP_RS00685 -2.2 -2.0 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06925 -2.2 -1.9 ribonuclease VapC4 compare
MMP_RS06895 -2.2 -1.2 selenocysteine-specific translation elongation factor compare
MMP_RS05540 -2.2 -2.5 hypothetical protein compare
MMP_RS03435 -2.1 -1.1 ketol-acid reductoisomerase compare
MMP_RS05850 -2.1 -2.4 Ldh family oxidoreductase compare
MMP_RS05070 -2.1 -4.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS07845 -2.1 -1.8 LL-diaminopimelate aminotransferase compare
MMP_RS00985 -2.1 -3.1 CDC48 family AAA ATPase compare
MMP_RS04870 -2.1 -3.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS03140 -2.1 -4.9 hypothetical protein compare
MMP_RS03095 -2.0 -4.4 diphthine synthase compare
MMP_RS07685 -2.0 -5.5 TIGR01212 family radical SAM protein compare
MMP_RS03145 -2.0 -3.2 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08445 -1.9 -2.5 DUF2099 family protein compare
MMP_RS01840 -1.9 -4.9 TIGR00289 family protein compare
MMP_RS01525 -1.8 -1.1 nucleoside-diphosphate kinase compare
MMP_RS05765 -1.8 -2.5 M42 family metallopeptidase compare
MMP_RS00295 -1.7 -1.4 gamma carbonic anhydrase family protein compare
MMP_RS03385 -1.7 -0.6 cation diffusion facilitator family transporter compare
MMP_RS02165 -1.7 -4.3 tRNA-dihydrouridine synthase compare
MMP_RS06155 -1.7 -1.6 DUF4186 domain-containing protein compare
MMP_RS05925 -1.7 -1.8 small nuclear ribonucleoprotein compare
MMP_RS07200 -1.7 -4.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07750 -1.7 -2.7 DUF357 domain-containing protein compare
MMP_RS06930 -1.7 -5.4 MBL fold metallo-hydrolase compare
MMP_RS04710 -1.7 -0.9 hypothetical protein compare
MMP_RS05955 -1.7 -1.1 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS05245 -1.7 -4.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00515 -1.6 -0.6 DUF655 domain-containing protein compare
MMP_RS06760 -1.6 -2.3 hypothetical protein compare
MMP_RS08595 -1.6 -0.7 flagellar protein C compare
MMP_RS05250 -1.6 -0.8 NFYB/HAP3 family transcription factor subunit compare
MMP_RS05675 -1.6 -1.3 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS06130 -1.6 -2.3 peptidylprolyl isomerase compare
MMP_RS05920 -1.5 -0.4 50S ribosomal protein L37e compare
MMP_RS05430 -1.5 -2.9 TIGR00288 family NYN domain-containing protein compare
MMP_RS00050 -1.5 -4.0 AarF/UbiB family protein compare
MMP_RS07960 -1.5 -4.1 sugar phosphate isomerase/epimerase compare
MMP_RS05065 -1.5 -2.1 CooT family nickel-binding protein compare
MMP_RS02930 -1.5 -1.9 class I SAM-dependent methyltransferase compare
MMP_RS00475 -1.5 -4.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS02800 -1.4 -2.9 nucleotidyltransferase domain-containing protein compare
MMP_RS02235 -1.4 -4.8 CBS domain-containing protein compare
MMP_RS03775 -1.4 -1.4 4Fe-4S dicluster domain-containing protein compare
MMP_RS05815 -1.4 -1.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS03350 -1.4 -2.4 winged helix-turn-helix domain-containing protein compare
MMP_RS01980 -1.4 -5.3 trimeric intracellular cation channel family protein compare
MMP_RS00810 -1.4 -3.0 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 casamino acids across organisms