Experiment set4IT085 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Deoxyribonucleic acid from herring sperm 10 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_04974 -3.3 -6.3 aromatic-amino-acid transaminase compare
H281DRAFT_02926 -3.1 -11.5 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_06072 -2.9 -8.6 3-isopropylmalate dehydrogenase compare
H281DRAFT_04552 -2.9 -3.3 acetolactate synthase, small subunit compare
H281DRAFT_02235 -2.8 -5.3 multi-sensor signal transduction histidine kinase compare
H281DRAFT_04677 -2.7 -11.6 starvation-inducible DNA-binding protein compare
H281DRAFT_04707 -2.7 -7.3 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_05713 -2.7 -7.1 anthranilate phosphoribosyltransferase compare
H281DRAFT_05714 -2.6 -2.2 anthranilate synthase, component II compare
H281DRAFT_00395 -2.5 -5.7 hydroxymethylpyrimidine synthase compare
H281DRAFT_06237 -2.5 -2.8 cell division-specific peptidoglycan biosynthesis regulator FtsW compare
H281DRAFT_05715 -2.5 -16.5 anthranilate synthase, component I compare
H281DRAFT_06288 -2.4 -6.9 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
H281DRAFT_02231 -2.4 -2.4 7-carboxy-7-deazaguanine synthase, Cx14CxxC type compare
H281DRAFT_00627 -2.3 -7.7 phosphoenolpyruvate synthase compare
H281DRAFT_06067 -2.3 -9.5 tryptophan synthase, beta chain compare
H281DRAFT_05649 -2.3 -3.4 transcriptional regulator, BolA protein family compare
H281DRAFT_05086 -2.3 -3.0 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_06060 -2.3 -5.0 amidophosphoribosyltransferase compare
H281DRAFT_02940 -2.3 -2.3 beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24) compare
H281DRAFT_06075 -2.2 -6.3 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_04679 -2.2 -6.4 pyrroline-5-carboxylate reductase compare
H281DRAFT_06073 -2.2 -4.3 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_06065 -2.2 -6.4 tryptophan synthase, alpha chain compare
H281DRAFT_00786 -2.2 -7.2 hydroxypyruvate isomerase compare
H281DRAFT_02004 -2.1 -4.9 phosphoglycerate mutase compare
H281DRAFT_04004 -2.1 -4.3 (p)ppGpp synthetase I, SpoT/RelA compare
H281DRAFT_04553 -2.1 -3.4 ketol-acid reductoisomerase compare
H281DRAFT_00860 -2.1 -2.6 phosphoserine phosphatase compare
H281DRAFT_05712 -2.1 -4.4 indole-3-glycerol phosphate synthase compare
H281DRAFT_04654 -2.1 -1.7 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_04719 -2.1 -3.8 TolB protein compare
H281DRAFT_06232 -2.1 -4.8 peptidoglycan synthetase FtsI compare
H281DRAFT_06059 -2.0 -7.2 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_00075 -2.0 -2.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04680 -2.0 -2.6 hypothetical protein compare
H281DRAFT_06008 -1.9 -7.7 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_00909 -1.9 -3.2 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_04120 -1.9 -6.4 argininosuccinate synthase compare
H281DRAFT_00650 -1.8 -6.4 transcriptional regulator, DeoR family compare
H281DRAFT_02600 -1.8 -1.7 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_06068 -1.8 -2.8 phosphoribosylanthranilate isomerase compare
H281DRAFT_05116 -1.8 -6.8 cell division protein ZapE compare
H281DRAFT_00853 -1.8 -1.8 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_06220 -1.8 -2.3 hypothetical protein compare
H281DRAFT_04419 -1.8 -5.2 Ppx/GppA phosphatase compare
H281DRAFT_05087 -1.8 -2.6 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_00176 -1.8 -1.5 outer membrane lipoprotein carrier protein compare
H281DRAFT_05620 -1.7 -11.8 glutamate synthase (NADH) large subunit compare
H281DRAFT_04119 -1.7 -5.7 ornithine carbamoyltransferase compare
H281DRAFT_04710 -1.7 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_05160 -1.7 -7.9 allantoicase compare
H281DRAFT_02214 -1.7 -10.0 homoserine O-acetyltransferase compare
H281DRAFT_00290 -1.7 -1.5 Cytochrome c553 compare
H281DRAFT_00468 -1.7 -4.3 dihydrolipoamide dehydrogenase compare
H281DRAFT_05621 -1.7 -3.7 glutamate synthase (NADH) small subunit compare
H281DRAFT_00894 -1.7 -7.5 glycerate kinase compare
H281DRAFT_02215 -1.6 -4.6 methionine biosynthesis protein MetW compare
H281DRAFT_04415 -1.6 -1.5 phosphate uptake regulator, PhoU compare
H281DRAFT_05158 -1.6 -3.4 putative urate catabolism protein compare
H281DRAFT_04751 -1.6 -9.8 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_00115 -1.6 -2.4 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_03094 -1.6 -1.1 transcriptional regulator, MarR family compare
H281DRAFT_00843 -1.6 -3.1 lipoprotein NlpD compare
H281DRAFT_02955 -1.6 -1.9 NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family compare
H281DRAFT_00074 -1.5 -2.9 UDP-galactose 4-epimerase compare
H281DRAFT_05159 -1.5 -2.5 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_03915 -1.5 -2.3 UDPglucose 6-dehydrogenase compare
H281DRAFT_03931 -1.5 -2.5 phosphoglycolate phosphatase compare
H281DRAFT_01382 -1.5 -1.6 Cellulose biosynthesis protein BcsR compare
H281DRAFT_04169 -1.5 -5.4 outer membrane protein, multidrug efflux system compare
H281DRAFT_03926 -1.5 -6.4 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_04610 -1.5 -10.3 Fe-S oxidoreductase compare
H281DRAFT_05315 -1.5 -2.1 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_01644 -1.5 -1.6 muconolactone delta-isomerase compare
H281DRAFT_02556 -1.5 -2.4 Outer membrane protein (porin) compare
H281DRAFT_00812 -1.5 -2.2 molybdopterin molybdotransferase compare
H281DRAFT_01986 -1.5 -6.0 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_00375 -1.4 -2.1 benzoyl-CoA oxygenase, component A compare
H281DRAFT_01889 -1.4 -3.1 7-cyano-7-deazaguanine reductase compare
H281DRAFT_04687 -1.4 -7.6 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
H281DRAFT_00175 -1.4 -2.5 DNA translocase FtsK compare
H281DRAFT_01943 -1.4 -2.3 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
H281DRAFT_05044 -1.4 -3.4 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_06264 -1.4 -2.4 glutamate 5-kinase compare
H281DRAFT_00603 -1.4 -2.7 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_04064 -1.4 -3.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_01894 -1.3 -1.2 transcriptional regulator, MarR family compare
H281DRAFT_02575 -1.3 -1.5 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_03042 -1.3 -1.8 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_02957 -1.3 -2.9 Predicted xylanase/chitin deacetylase compare
H281DRAFT_00785 -1.3 -1.7 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_05563 -1.3 -1.7 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_00808 -1.3 -3.2 Uncharacterized conserved protein, contains Mth938-like domain compare
H281DRAFT_00523 -1.3 -1.4 protease FtsH subunit HflK compare
H281DRAFT_04643 -1.3 -4.2 methylmalonyl-CoA epimerase compare
H281DRAFT_01125 -1.3 -1.6 protein of unknown function (DUF2760) compare
H281DRAFT_01165 -1.3 -1.8 hypothetical protein compare
H281DRAFT_00819 -1.3 -1.6 competence protein ComEA compare
H281DRAFT_00854 -1.3 -5.4 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_03296 -1.3 -1.5 hypothetical protein compare
H281DRAFT_03281 -1.3 -1.4 Glycosyltransferase compare
H281DRAFT_03390 -1.2 -2.3 H+/Cl- antiporter ClcA compare
H281DRAFT_06027 -1.2 -7.7 AMP nucleosidase compare
H281DRAFT_00933 -1.2 -3.2 hypothetical protein compare
H281DRAFT_05610 -1.2 -1.8 hypothetical protein compare
H281DRAFT_04208 -1.2 -2.2 RecA protein compare
H281DRAFT_00189 -1.2 -3.6 heptosyltransferase-1 compare
H281DRAFT_00531 -1.2 -2.6 hypothetical protein compare
H281DRAFT_06393 -1.2 -2.9 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_06441 -1.2 -2.4 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_01684 -1.2 -2.7 transcriptional regulator, TetR family compare
H281DRAFT_05021 -1.2 -1.2 Response regulator compare
H281DRAFT_05803 -1.2 -6.0 dipeptide transport system permease protein compare
H281DRAFT_04788 -1.2 -1.8 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03745 -1.2 -1.6 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_01994 -1.2 -6.2 cytochrome c oxidase subunit 2 compare
H281DRAFT_01001 -1.2 -2.0 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_01993 -1.2 -5.4 cytochrome c oxidase subunit 1 compare
H281DRAFT_00797 -1.2 -3.5 D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC 2.7.1.167) compare
H281DRAFT_01321 -1.2 -1.9 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_00114 -1.2 -3.6 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_05678 -1.2 -1.4 hypothetical protein compare
H281DRAFT_04487 -1.2 -3.2 CBS domain-containing protein compare
H281DRAFT_00111 -1.2 -4.4 RND family efflux transporter, MFP subunit compare
H281DRAFT_04225 -1.1 -4.1 transcriptional regulator, DeoR family compare
H281DRAFT_01965 -1.1 -1.4 hypothetical protein compare
H281DRAFT_04356 -1.1 -1.6 anti sigma-E protein, RseA compare
H281DRAFT_00120 -1.1 -3.0 sirohydrochlorin cobaltochelatase compare
H281DRAFT_05392 -1.1 -3.5 hypothetical protein compare
H281DRAFT_01142 -1.1 -1.9 2,5-furandicarboxylate decarboxylase 2 compare
H281DRAFT_04837 -1.1 -6.7 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_01985 -1.1 -5.8 protoheme IX farnesyltransferase compare
H281DRAFT_03429 -1.1 -1.3 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
H281DRAFT_01107 -1.1 -1.1 hypothetical protein compare
H281DRAFT_04357 -1.1 -3.7 sigma E regulatory protein, MucB/RseB compare
H281DRAFT_06445 -1.1 -1.0 Molybdopterin synthase catalytic subunit compare
H281DRAFT_04509 -1.1 -3.4 transcriptional regulator, MerR family compare
H281DRAFT_01811 -1.1 -2.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04302 -1.1 -2.0 molybdopterin adenylyltransferase compare
H281DRAFT_05853 -1.1 -3.4 Protein of unknown function compare
H281DRAFT_05806 -1.1 -4.9 dipeptide transport system ATP-binding protein compare
H281DRAFT_04640 -1.1 -2.2 dimethyladenosine transferase compare
H281DRAFT_06546 -1.1 -3.3 hypothetical protein compare
H281DRAFT_02948 -1.1 -2.3 metabolite-proton symporter compare
H281DRAFT_02422 -1.1 -2.7 hypothetical protein compare
H281DRAFT_04619 -1.1 -4.5 Uncharacterized membrane protein compare
H281DRAFT_01289 -1.1 -1.0 mxaA protein compare
H281DRAFT_04889 -1.0 -1.3 hypothetical protein compare
H281DRAFT_01401 -1.0 -2.4 Polyisoprenoid-binding protein YceI compare
H281DRAFT_03638 -1.0 -1.9 Cupin domain-containing protein compare
H281DRAFT_01821 -1.0 -1.2 Predicted lipid-binding transport protein, Tim44 family compare
H281DRAFT_05805 -1.0 -5.6 dipeptide transport system ATP-binding protein compare
H281DRAFT_02196 -1.0 -2.4 phytanoyl-CoA hydroxylase compare
H281DRAFT_01224 -1.0 -1.2 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_06485 -1.0 -3.1 c-di-GMP-related signal transduction protein, contains EAL and HDOD domains compare
H281DRAFT_04196 -1.0 -3.7 SnoaL-like domain-containing protein compare
H281DRAFT_03306 -1.0 -2.2 Cytochrome c, mono- and diheme variants compare
H281DRAFT_04982 -1.0 -2.1 transcriptional regulator, MerR family compare
H281DRAFT_02855 -1.0 -1.7 carbonic anhydrase compare
H281DRAFT_03519 -1.0 -2.4 hypothetical protein compare
H281DRAFT_06180 -1.0 -1.5 hypothetical protein compare
H281DRAFT_03637 -1.0 -2.5 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_04713 -1.0 -2.8 membrane-associated protein compare
H281DRAFT_03511 -1.0 -4.6 Uncharacterized conserved protein compare
H281DRAFT_01101 -1.0 -1.3 Small-conductance mechanosensitive channel compare
H281DRAFT_01067 -1.0 -1.1 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_03163 -1.0 -1.5 Protein of unknown function (DUF3348) compare
H281DRAFT_03297 -1.0 -1.3 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_06388 -1.0 -1.1 Sugar phosphate permease compare
H281DRAFT_02230 -1.0 -1.5 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase compare
H281DRAFT_05801 -1.0 -3.1 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_02798 -1.0 -1.7 hypothetical protein compare
H281DRAFT_05915 -1.0 -1.4 hypothetical protein compare
H281DRAFT_03925 -1.0 -4.3 chorismate mutase compare
H281DRAFT_01799 -1.0 -1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00148 -1.0 -2.4 chromosome partitioning protein compare
H281DRAFT_04071 -1.0 -5.2 quinolinate synthetase compare
H281DRAFT_03542 -1.0 -1.5 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
H281DRAFT_03771 -1.0 -1.8 hypothetical protein compare
H281DRAFT_05085 -1.0 -1.7 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_00736 -1.0 -2.4 Lysophospholipase compare
H281DRAFT_05601 -1.0 -0.9 hypothetical protein compare
H281DRAFT_01276 -1.0 -1.5 vanillin synthase /trans-feruloyl-CoA hydratase compare
H281DRAFT_03705 -1.0 -1.9 transcriptional regulator, GntR family compare
H281DRAFT_00913 -1.0 -4.7 peptide-methionine (R)-S-oxide reductase compare
H281DRAFT_05911 -1.0 -3.1 hypothetical protein compare
H281DRAFT_06315 -1.0 -0.7 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_00750 -1.0 -1.6 hypothetical protein compare
H281DRAFT_04768 -1.0 -1.8 colanic acid biosynthesis protein WcaH compare
H281DRAFT_00194 -0.9 -1.3 argininosuccinate lyase compare
H281DRAFT_06074 -0.9 -1.7 entericidin A compare
H281DRAFT_04721 -0.9 -1.0 Cell division and transport-associated protein TolR compare
H281DRAFT_01863 -0.9 -2.5 fatty-acyl-CoA synthase compare
H281DRAFT_05221 -0.9 -2.0 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_04236 -0.9 -2.3 Predicted ring-cleavage extradiol dioxygenase compare
H281DRAFT_05633 -0.9 -1.8 hypothetical protein compare
H281DRAFT_05802 -0.9 -5.8 dipeptide transport system substrate-binding protein compare
H281DRAFT_01235 -0.9 -2.8 DNA-binding protein H-NS compare
H281DRAFT_01386 -0.9 -3.5 endoglucanase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Paraburkholderia bryophila 376MFSha3.1

For carbon source Deoxyribonucleic acid from herring sperm across organisms