Experiment set4IT084 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -3.9 -4.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.7 -11.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1408 -3.4 -4.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2384 -3.4 -9.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1534 -3.3 -16.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2545 -3.2 -11.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2547 -3.2 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_15 -3.2 -3.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1307 -3.1 -2.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2303 -3.1 -13.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1067 -3.1 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1624 -3.1 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2338 -3.0 -5.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4846 -3.0 -6.0 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) conserved
Pf1N1B4_1830 -2.9 -8.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2112 -2.9 -13.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1831 -2.9 -10.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2858 -2.9 -8.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1533 -2.9 -6.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2878 -2.9 -7.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2548 -2.8 -6.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1625 -2.8 -5.8 FIG00956267: hypothetical protein compare
Pf1N1B4_3697 -2.8 -8.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1565 -2.8 -3.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_350 -2.7 -7.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_399 -2.7 -2.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_2549 -2.7 -8.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_598 -2.7 -4.9 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_5666 -2.7 -3.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2010 -2.6 -5.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_4849 -2.6 -2.7 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_2337 -2.6 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1626 -2.6 -6.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5665 -2.6 -4.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_742 -2.6 -6.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_847 -2.5 -8.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2879 -2.5 -5.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2225 -2.5 -10.7 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_597 -2.4 -7.5 D-mannose isomerase (EC 5.3.1.7) (from data) conserved
Pf1N1B4_2850 -2.4 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1434 -2.3 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2272 -2.3 -3.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_596 -2.3 -4.3 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_12 -2.3 -6.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2009 -2.2 -4.6 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1315 -2.2 -8.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_593 -2.2 -6.1 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf1N1B4_1617 -2.1 -7.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_4065 -2.1 -7.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2208 -2.1 -7.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2874 -2.0 -3.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2280 -2.0 -7.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2282 -2.0 -8.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4847 -2.0 -3.0 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_1906 -2.0 -3.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3812 -1.9 -7.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1627 -1.9 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_594 -1.9 -6.1 Glucose ABC transport system, inner membrane component 2 compare
Pf1N1B4_2487 -1.9 -7.5 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2011 -1.9 -7.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2859 -1.8 -11.7 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3506 -1.8 -5.9 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_595 -1.8 -7.5 Glucose ABC transport system, inner membrane component 1 compare
Pf1N1B4_2021 -1.8 -2.0 hypothetical protein compare
Pf1N1B4_5624 -1.8 -2.4 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_3081 -1.7 -14.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_5357 -1.7 -2.5 hypothetical protein compare
Pf1N1B4_762 -1.7 -5.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2488 -1.7 -6.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1668 -1.6 -4.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_4845 -1.6 -3.0 Xylulose kinase (EC 2.7.1.17) compare
Pf1N1B4_4558 -1.6 -3.2 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_4850 -1.6 -5.3 Various polyols ABC transporter, periplasmic substrate-binding protein conserved
Pf1N1B4_2284 -1.6 -4.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_3906 -1.6 -4.3 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3368 -1.6 -2.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_3038 -1.5 -2.7 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4851 -1.5 -2.6 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_1317 -1.5 -3.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_3907 -1.5 -2.7 FIG00953287: hypothetical protein compare
Pf1N1B4_958 -1.5 -2.4 Stringent starvation protein B compare
Pf1N1B4_4040 -1.5 -2.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1294 -1.4 -2.1 VgrG protein compare
Pf1N1B4_1684 -1.4 -6.8 Oxidoreductase, aldo/keto reductase family compare
Pf1N1B4_2490 -1.4 -4.5 Biotin synthesis protein BioC compare
Pf1N1B4_1329 -1.4 -5.0 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1837 -1.4 -2.2 Osmotically inducible protein C compare
Pf1N1B4_3833 -1.4 -6.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_58 -1.3 -4.9 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1566 -1.3 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5976 -1.3 -2.1 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_683 -1.3 -3.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_4335 -1.3 -2.1 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_3730 -1.3 -2.7 Sodium-dependent transporter compare
Pf1N1B4_3518 -1.3 -1.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_4952 -1.3 -2.3 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_1750 -1.3 -2.4 Death on curing protein, Doc toxin compare
Pf1N1B4_2486 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_2377 -1.3 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4960 -1.3 -2.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_4957 -1.3 -1.7 Transcriptional regulator, TetR family compare
Pf1N1B4_2491 -1.2 -2.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_4028 -1.2 -3.0 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4156 -1.2 -2.3 putative secreted protein compare
Pf1N1B4_3011 -1.2 -2.0 Tyrosine recombinase XerD compare
Pf1N1B4_1554 -1.2 -4.7 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_652 -1.2 -6.6 Sensory box histidine kinase compare
Pf1N1B4_224 -1.2 -2.1 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_1328 -1.2 -2.4 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_4671 -1.2 -2.3 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_1113 -1.1 -4.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_5899 -1.1 -1.5 FIG00954746: hypothetical protein compare
Pf1N1B4_2489 -1.1 -4.1 Biotin synthesis protein BioH compare
Pf1N1B4_1827 -1.1 -2.9 FIG00953482: hypothetical protein compare
Pf1N1B4_4132 -1.1 -1.8 Mobile element protein compare
Pf1N1B4_4299 -1.1 -2.3 sensor histidine kinase compare
Pf1N1B4_1474 -1.1 -3.0 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_5354 -1.1 -2.8 hypothetical protein compare
Pf1N1B4_2493 -1.1 -2.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_5402 -1.1 -2.2 hypothetical protein compare
Pf1N1B4_345 -1.1 -1.5 Integration host factor beta subunit compare
Pf1N1B4_257 -1.1 -4.1 sensor histidine kinase/response regulator compare
Pf1N1B4_615 -1.1 -2.0 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_2706 -1.1 -2.1 FIG00954871: hypothetical protein compare
Pf1N1B4_1579 -1.1 -3.1 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_6027 -1.1 -2.4 FIG00955358: hypothetical protein compare
Pf1N1B4_5002 -1.1 -3.5 Protein rarD compare
Pf1N1B4_1333 -1.0 -3.3 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf1N1B4_2912 -1.0 -1.4 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_5047 -1.0 -2.5 Integral membrane protein TerC compare
Pf1N1B4_3290 -1.0 -2.3 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_1568 -1.0 -2.8 Twin-arginine translocation protein TatB compare
Pf1N1B4_5838 -1.0 -1.9 FIG00956589: hypothetical protein compare
Pf1N1B4_5133 -1.0 -2.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4436 -1.0 -1.7 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_2283 -1.0 -1.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_118 -1.0 -2.2 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_4540 -1.0 -2.0 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_5224 -1.0 -2.1 tRNA-Arg-CCT compare
Pf1N1B4_2105 -0.9 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4422 -0.9 -1.4 ABC transporter amino acid-binding protein compare
Pf1N1B4_1535 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_234 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_27 -0.9 -2.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1695 -0.9 -1.2 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_219 -0.9 -2.5 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_348 -0.9 -2.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2684 -0.9 -1.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_5682 -0.9 -1.9 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_3703 -0.9 -2.0 NLP/P60 family protein compare
Pf1N1B4_629 -0.9 -2.0 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_4481 -0.9 -1.9 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_5904 -0.9 -1.5 FIG00955320: hypothetical protein compare
Pf1N1B4_2228 -0.9 -2.4 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_4017 -0.9 -1.6 DNA-binding heavy metal response regulator compare
Pf1N1B4_4725 -0.9 -2.0 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_359 -0.9 -1.7 GGDEF domain protein compare
Pf1N1B4_2372 -0.9 -2.7 Transcriptional regulator, LysR family compare
Pf1N1B4_1300 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_602 -0.9 -1.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_2540 -0.9 -6.0 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf1N1B4_3273 -0.8 -1.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_3685 -0.8 -2.7 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_3582 -0.8 -1.6 C-methyltransferase compare
Pf1N1B4_5699 -0.8 -1.4 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_2360 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_3356 -0.8 -1.3 Cyclic nucleotide-binding protein compare
Pf1N1B4_4004 -0.8 -1.3 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_5724 -0.8 -1.7 High-affinity iron permease compare
Pf1N1B4_576 -0.8 -2.5 hypothetical protein compare
Pf1N1B4_2851 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_578 -0.8 -2.0 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_2860 -0.8 -3.5 FIG00954153: hypothetical protein compare
Pf1N1B4_647 -0.8 -4.1 hypothetical protein compare
Pf1N1B4_115 -0.8 -1.3 Membrane protein mosC compare
Pf1N1B4_4733 -0.8 -1.8 Fap system putative outer membrane protein compare
Pf1N1B4_2682 -0.8 -1.3 Antiholin-like protein LrgA compare
Pf1N1B4_2479 -0.8 -1.6 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_648 -0.8 -7.3 Outer membrane porin, OprD family compare
Pf1N1B4_3006 -0.8 -3.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_4887 -0.8 -1.7 Pirin compare
Pf1N1B4_5923 -0.8 -1.8 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_182 -0.8 -1.8 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases compare
Pf1N1B4_3711 -0.8 -3.1 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_5812 -0.8 -1.9 FIG00955248: hypothetical protein compare
Pf1N1B4_2478 -0.8 -3.9 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_3350 -0.8 -1.5 FIG00954807: hypothetical protein compare
Pf1N1B4_1146 -0.8 -4.0 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
Pf1N1B4_5317 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_4039 -0.8 -3.1 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1936 -0.7 -3.0 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_232 -0.7 -1.1 DNA-binding response regulator, LuxR family compare
Pf1N1B4_263 -0.7 -1.4 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf1N1B4_4455 -0.7 -1.4 FIG00953528: hypothetical protein compare
Pf1N1B4_106 -0.7 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_617 -0.7 -1.3 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3078 -0.7 -1.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_1540 -0.7 -2.1 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_4729 -0.7 -1.2 Hemolysin-type calcium-binding region compare
Pf1N1B4_339 -0.7 -1.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Mannose in Pseudomonas fluorescens FW300-N1B4

For carbon source D-Mannose across organisms