Experiment set4IT084 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_4.1_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_00025 -4.6 -1.1 membrane protein insertion efficiency factor YidD compare
CSW01_00450 -4.2 -1.9 SCP2 domain-containing protein compare
CSW01_11555 -4.1 -2.8 riboflavin synthase compare
CSW01_14680 -4.1 -0.9 aminotransferase compare
CSW01_03795 -4.0 -1.9 phosphate ABC transporter ATP-binding protein compare
CSW01_18350 -4.0 -1.9 cell division protein DedD compare
CSW01_01485 -3.9 -4.7 transcriptional regulator compare
CSW01_13285 -3.9 -2.7 ribulose-phosphate 3-epimerase compare
CSW01_12365 -3.9 -2.7 inorganic phosphate transporter compare
CSW01_11560 -3.8 -3.7 riboflavin biosynthesis protein RibD compare
CSW01_03215 -3.7 -14.3 ABC transporter ATP-binding protein compare
CSW01_12005 -3.6 -2.5 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_14055 -3.5 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_03980 -3.5 -11.4 IMP dehydrogenase compare
CSW01_03410 -3.5 -3.0 polyribonucleotide nucleotidyltransferase compare
CSW01_00015 -3.4 -2.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_04820 -3.4 -12.8 serine hydroxymethyltransferase compare
CSW01_11730 -3.4 -3.8 2-dehydropantoate 2-reductase compare
CSW01_06380 -3.2 -2.2 GTP cyclohydrolase II compare
CSW01_15730 -3.1 -1.0 VOC family protein compare
CSW01_03210 -3.0 -13.8 iron ABC transporter permease compare
CSW01_19395 -3.0 -1.0 histidine kinase compare
CSW01_12320 -3.0 -5.0 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_06970 -2.9 -1.6 DUF2256 domain-containing protein compare
CSW01_18635 -2.9 -5.6 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_16590 -2.8 -1.1 N-acetyltransferase compare
CSW01_03205 -2.7 -8.4 iron ABC transporter substrate-binding protein compare
CSW01_00560 -2.7 -7.4 DNA polymerase I compare
CSW01_10340 -2.7 -4.9 MinD/ParA family protein compare
CSW01_05265 -2.7 -1.3 methionine--tRNA ligase compare
CSW01_10255 -2.6 -2.0 cytochrome c-type biogenesis protein CcmH compare
CSW01_06585 -2.6 -2.8 fumarate hydratase compare
CSW01_05575 -2.6 -3.5 phosphate acetyltransferase compare
CSW01_09220 -2.4 -1.4 cyd operon protein YbgE compare
CSW01_12885 -2.4 -8.5 fructose 1,6-bisphosphatase compare
CSW01_01490 -2.4 -4.2 Fis family transcriptional regulator compare
CSW01_10265 -2.4 -6.1 c-type cytochrome biogenesis protein CcmF compare
CSW01_11215 -2.3 -4.8 flagellar hook assembly protein FlgD compare
CSW01_17750 -2.3 -1.0 cytochrome B compare
CSW01_03045 -2.2 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_13305 -2.2 -2.3 shikimate kinase compare
CSW01_10290 -2.2 -4.3 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_13805 -2.2 -4.9 Hsp33 family molecular chaperone HslO compare
CSW01_14085 -2.2 -2.9 transcriptional regulator compare
CSW01_01125 -2.2 -7.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_00380 -2.1 -1.5 hypothetical protein compare
CSW01_00095 -2.1 -2.7 hypothetical protein compare
CSW01_02970 -2.1 -7.3 glutamate--cysteine ligase compare
CSW01_00460 -2.0 -5.0 twin-arginine translocase subunit TatA compare
CSW01_03695 -2.0 -6.4 ribosomal large subunit pseudouridine synthase D compare
CSW01_02875 -2.0 -5.2 DNA recombination/repair protein RecA compare
CSW01_03325 -2.0 -4.6 porin compare
CSW01_18525 -2.0 -1.4 integrase compare
CSW01_13635 -2.0 -8.6 thiol:disulfide interchange protein DsbD compare
CSW01_05065 -2.0 -4.7 N-acetylglucosamine repressor compare
CSW01_02490 -2.0 -7.3 glutathione synthetase compare
CSW01_11920 -2.0 -7.6 NupC/NupG family nucleoside CNT transporter compare
CSW01_09625 -1.9 -2.1 hypothetical protein compare
CSW01_03050 -1.9 -4.5 cytochrome b compare
CSW01_09720 -1.9 -2.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_10270 -1.9 -3.6 cytochrome c-type biogenesis protein CcmE compare
CSW01_17495 -1.8 -6.1 glycerol-3-phosphate dehydrogenase compare
CSW01_03845 -1.8 -1.3 hypothetical protein compare
CSW01_12480 -1.8 -1.4 sigma-E factor negative regulatory protein RseA compare
CSW01_14080 -1.8 -0.9 DUF3283 domain-containing protein compare
CSW01_05730 -1.8 -9.7 inosine/guanosine kinase compare
CSW01_11780 -1.8 -3.9 exodeoxyribonuclease V subunit beta compare
CSW01_12680 -1.7 -5.7 cytosol aminopeptidase compare
CSW01_17325 -1.7 -4.6 transaldolase compare
CSW01_05580 -1.7 -4.3 acetate kinase compare
CSW01_00470 -1.7 -4.9 twin-arginine translocase subunit TatC compare
CSW01_08675 -1.7 -1.3 DUF2007 domain-containing protein compare
CSW01_00500 -1.7 -10.3 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_02455 -1.7 -5.6 YggS family pyridoxal phosphate enzyme compare
CSW01_07150 -1.6 -1.8 spermidine/putrescine ABC transporter permease PotC compare
CSW01_12200 -1.6 -3.2 ribosomal RNA small subunit methyltransferase H compare
CSW01_12735 -1.6 -3.8 RidA family protein compare
CSW01_01820 -1.6 -4.6 N-acetylmuramoyl-L-alanine amidase compare
CSW01_01920 -1.6 -1.3 bacterioferritin compare
CSW01_10605 -1.6 -1.6 flagellar motor switch protein FliN compare
CSW01_13810 -1.6 -5.1 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_07870 -1.6 -3.3 ABC transporter ATP-binding protein compare
CSW01_17885 -1.6 -1.7 hypothetical protein compare
CSW01_08985 -1.5 -1.2 6-phospho-beta-glucosidase compare
CSW01_14770 -1.5 -2.2 sodium:proton antiporter compare
CSW01_17275 -1.5 -0.7 large conductance mechanosensitive channel protein MscL compare
CSW01_03075 -1.5 -1.9 phosphoheptose isomerase compare
CSW01_18730 -1.5 -1.1 DUF406 domain-containing protein compare
CSW01_10285 -1.5 -2.1 heme exporter protein CcmB compare
CSW01_08705 -1.4 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_16835 -1.4 -4.0 catabolite repressor/activator compare
CSW01_02755 -1.4 -1.5 glutamyl-tRNA amidotransferase compare
CSW01_07475 -1.4 -1.2 glutaredoxin family protein compare
CSW01_00870 -1.4 -3.4 cytochrome c5 family protein compare
CSW01_00170 -1.4 -3.6 thiol:disulfide interchange protein DsbA compare
CSW01_08535 -1.4 -2.1 TIGR02647 family protein compare
CSW01_11145 -1.4 -2.5 hypothetical protein compare
CSW01_02450 -1.4 -5.1 pyrroline-5-carboxylate reductase compare
CSW01_12130 -1.4 -1.5 DUF721 domain-containing protein compare
CSW01_09040 -1.4 -3.0 primosomal protein compare
CSW01_02230 -1.4 -2.9 ribonuclease E inhibitor RraB compare
CSW01_02430 -1.4 -3.6 non-canonical purine NTP pyrophosphatase compare
CSW01_00540 -1.4 -1.0 hypothetical protein compare
CSW01_11325 -1.3 -1.0 DUF3149 domain-containing protein compare
CSW01_09035 -1.3 -2.4 IclR family transcriptional regulator compare
CSW01_11200 -1.3 -3.9 flagellar basal-body rod protein FlgG compare
CSW01_04850 -1.3 -1.3 septal ring lytic transglycosylase RlpA compare
CSW01_06280 -1.3 -4.3 succinylglutamate desuccinylase compare
CSW01_07330 -1.3 -2.7 colonization factor compare
CSW01_04910 -1.3 -1.6 PhoH family protein compare
CSW01_15180 -1.3 -1.7 3-keto-L-gulonate-6-phosphate decarboxylase compare
CSW01_12250 -1.3 -4.0 site-specific tyrosine recombinase XerD compare
CSW01_10875 -1.2 -3.4 redox-regulated ATPase YchF compare
CSW01_00650 -1.2 -4.9 tyrosine recombinase XerC compare
CSW01_10260 -1.2 -1.8 thiol:disulfide interchange protein DsbE compare
CSW01_05310 -1.2 -2.8 DUF3379 domain-containing protein compare
CSW01_18560 -1.2 -0.7 hypothetical protein compare
CSW01_08625 -1.2 -3.8 chromosome partition protein MukE compare
CSW01_16195 -1.2 -0.7 DUF645 domain-containing protein compare
CSW01_16920 -1.2 -1.4 hypothetical protein compare
CSW01_15425 -1.2 -0.7 DUF3265 domain-containing protein compare
CSW01_12760 -1.2 -3.1 phospholipid-binding protein MlaC compare
CSW01_10560 -1.2 -2.9 chorismate synthase compare
CSW01_04900 -1.2 -3.9 magnesium and cobalt efflux protein CorC compare
CSW01_05425 -1.2 -4.5 hypothetical protein compare
CSW01_15255 -1.2 -2.5 copper-binding protein compare
CSW01_18495 -1.1 -1.0 cytochrome bd-I oxidase subunit CydX compare
CSW01_14245 -1.1 -1.7 hypothetical protein compare
CSW01_10440 -1.1 -2.0 succinate dehydrogenase flavoprotein subunit compare
CSW01_10140 -1.1 -2.5 hypothetical protein compare
CSW01_11945 -1.1 -2.5 cation-binding protein compare
CSW01_03055 -1.1 -2.2 cytochrome c1 compare
CSW01_01875 -1.1 -1.3 hypothetical protein compare
CSW01_11670 -1.1 -1.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_00940 -1.1 -0.8 hypothetical protein compare
CSW01_11195 -1.1 -1.6 flagellar L-ring protein compare
CSW01_07005 -1.1 -1.5 hypothetical protein compare
CSW01_10420 -1.1 -3.2 succinyl-CoA ligase subunit beta compare
CSW01_07135 -1.1 -2.8 chromosome partitioning protein ParA compare
CSW01_10750 -1.1 -2.1 outer membrane protein assembly factor BamC compare
CSW01_16030 -1.1 -1.9 DUF3709 domain-containing protein compare
CSW01_05125 -1.1 -1.3 ribonuclease T compare
CSW01_05275 -1.1 -0.6 hypothetical protein compare
CSW01_17670 -1.1 -2.3 hypothetical protein compare
CSW01_05165 -1.0 -0.9 electron transport complex subunit RsxC compare
CSW01_15205 -1.0 -3.3 HTH-type transcriptional regulator UlaR compare
CSW01_09010 -1.0 -1.0 hypothetical protein compare
CSW01_06395 -1.0 -4.0 iron-regulated protein A compare
CSW01_05490 -1.0 -3.9 L-threonylcarbamoyladenylate synthase compare
CSW01_11220 -1.0 -2.3 flagellar basal body rod protein FlgC compare
CSW01_13675 -1.0 -2.5 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_11190 -1.0 -4.3 flagellar P-ring protein compare
CSW01_09465 -1.0 -2.9 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_01860 -1.0 -0.9 SlyX protein compare
CSW01_12255 -1.0 -2.3 flavodoxin FldB compare
CSW01_18270 -1.0 -0.7 L-ectoine synthase compare
CSW01_10455 -1.0 -2.1 citrate synthase compare
CSW01_10790 -1.0 -1.9 arsenate reductase (glutaredoxin) compare
CSW01_07205 -1.0 -3.0 copper-translocating P-type ATPase compare
CSW01_09525 -1.0 -0.9 DNA translocase FtsK compare
CSW01_07210 -1.0 -1.5 hypothetical protein compare
CSW01_12710 -1.0 -1.4 hypothetical protein compare
CSW01_10590 -1.0 -0.8 flagellar biosynthetic protein FliQ compare
CSW01_10020 -1.0 -4.6 ROK family protein compare
CSW01_00495 -1.0 -0.6 SOS-response transcriptional repressor compare
CSW01_14540 -0.9 -2.0 hypothetical protein compare
CSW01_12820 -0.9 -1.5 ribosome hibernation promoting factor compare
CSW01_06390 -0.9 -3.8 thiol oxidoreductase compare
CSW01_17525 -0.9 -0.7 hypothetical protein compare
CSW01_06870 -0.9 -2.3 7-carboxy-7-deazaguanine synthase QueE compare
CSW01_00465 -0.9 -1.2 twin-arginine translocase subunit TatB compare
CSW01_05585 -0.9 -2.3 DUF412 domain-containing protein compare
CSW01_13415 -0.9 -1.4 rhodanese-like domain-containing protein compare
CSW01_08730 -0.9 -1.2 phage-shock protein compare
CSW01_15030 -0.9 -1.8 hypothetical protein compare
CSW01_05390 -0.9 -2.1 YciK family oxidoreductase compare
CSW01_07750 -0.9 -0.5 hypothetical protein compare
CSW01_06385 -0.9 -3.9 peptidase compare
CSW01_01330 -0.9 -1.6 oxidoreductase compare
CSW01_06920 -0.9 -1.4 DUF2760 domain-containing protein compare
CSW01_10280 -0.9 -2.2 heme exporter protein C compare
CSW01_11535 -0.9 -2.0 thiamine-phosphate kinase compare
CSW01_03100 -0.9 -1.5 TetR/AcrR family transcriptional regulator compare
CSW01_07730 -0.9 -1.4 CPXCG motif-containing cysteine-rich protein compare
CSW01_07460 -0.9 -0.7 ribosome modulation factor compare
CSW01_08425 -0.9 -1.9 envelope stress response membrane protein PspC compare
CSW01_10145 -0.9 -2.0 ribonuclease E compare
CSW01_19125 -0.9 -1.0 branched-chain amino acid ABC transporter compare
CSW01_13640 -0.9 -2.0 DNA-binding response regulator compare
CSW01_08490 -0.8 -2.9 hypothetical protein compare
CSW01_06875 -0.8 -2.3 7-cyano-7-deazaguanine synthase QueC compare
CSW01_13445 -0.8 -1.1 elongation factor P compare
CSW01_17745 -0.8 -1.6 diacylglycerol kinase compare
CSW01_13450 -0.8 -1.3 EF-P beta-lysylation protein EpmB compare
CSW01_05925 -0.8 -1.6 tryptophan synthase subunit alpha compare
CSW01_18250 -0.8 -1.8 co-chaperone GroES compare
CSW01_18150 -0.8 -0.5 transcription initiation factor TFIIIB compare
CSW01_16185 -0.8 -1.4 DUF3265 domain-containing protein compare
CSW01_15105 -0.8 -2.6 class II glutamine amidotransferase compare
CSW01_14395 -0.8 -1.8 oxidoreductase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms