Experiment set4IT084 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxy-D-ribonic acid lithium salt 10 mM carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05801 -5.5 -6.5 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_05621 -5.2 -3.6 glutamate synthase (NADH) small subunit compare
H281DRAFT_00115 -4.8 -3.7 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_00194 -4.7 -3.9 argininosuccinate lyase compare
H281DRAFT_04120 -4.6 -9.3 argininosuccinate synthase compare
H281DRAFT_06075 -4.6 -8.1 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_06264 -4.6 -6.0 glutamate 5-kinase compare
H281DRAFT_02926 -4.3 -10.1 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_00860 -4.3 -2.1 phosphoserine phosphatase compare
H281DRAFT_06067 -4.3 -13.3 tryptophan synthase, beta chain compare
H281DRAFT_06072 -4.2 -9.6 3-isopropylmalate dehydrogenase compare
H281DRAFT_05713 -4.2 -7.5 anthranilate phosphoribosyltransferase compare
H281DRAFT_00853 -4.2 -2.2 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_02214 -4.1 -16.2 homoserine O-acetyltransferase compare
H281DRAFT_06059 -4.1 -9.4 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_06073 -4.1 -5.1 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_04119 -4.0 -7.2 ornithine carbamoyltransferase compare
H281DRAFT_00841 -4.0 -2.9 hypothetical protein compare
H281DRAFT_01798 -4.0 -3.4 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_06060 -4.0 -6.3 amidophosphoribosyltransferase compare
H281DRAFT_00117 -4.0 -10.1 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_05815 -3.9 -7.5 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_03925 -3.9 -9.9 chorismate mutase compare
H281DRAFT_06068 -3.9 -3.8 phosphoribosylanthranilate isomerase compare
H281DRAFT_05620 -3.8 -19.5 glutamate synthase (NADH) large subunit compare
H281DRAFT_02004 -3.8 -6.7 phosphoglycerate mutase compare
H281DRAFT_04610 -3.6 -16.2 Fe-S oxidoreductase compare
H281DRAFT_04388 -3.6 -1.8 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_04677 -3.6 -13.4 starvation-inducible DNA-binding protein compare
H281DRAFT_04082 -3.6 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_00465 -3.6 -4.8 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_04495 -3.5 -7.1 3-oxoacid CoA-transferase subunit A compare
H281DRAFT_00909 -3.5 -3.4 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_03926 -3.4 -9.1 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_06315 -3.4 -1.6 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_00114 -3.3 -7.1 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_05715 -3.3 -19.0 anthranilate synthase, component I compare
H281DRAFT_00641 -3.2 -7.4 2-deoxy-3-keto-D-ribonate cleavage enzyme (from data) compare
H281DRAFT_05712 -3.2 -5.7 indole-3-glycerol phosphate synthase compare
H281DRAFT_04974 -3.2 -5.5 aromatic-amino-acid transaminase compare
H281DRAFT_00644 -3.1 -7.7 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
H281DRAFT_00120 -3.0 -5.9 sirohydrochlorin cobaltochelatase compare
H281DRAFT_04679 -2.8 -3.2 pyrroline-5-carboxylate reductase compare
H281DRAFT_04710 -2.8 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_00118 -2.8 -5.9 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_06272 -2.7 -1.7 uncharacterized protein compare
H281DRAFT_02215 -2.7 -4.3 methionine biosynthesis protein MetW compare
H281DRAFT_00894 -2.5 -8.0 glycerate kinase compare
H281DRAFT_00197 -2.5 -11.5 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_00640 -2.5 -5.2 putative regulator of deoxyribonate oxidation (from data) compare
H281DRAFT_05714 -2.5 -3.1 anthranilate synthase, component II compare
H281DRAFT_04831 -2.3 -4.3 hypothetical protein compare
H281DRAFT_00852 -2.3 -5.3 acetyl-CoA acetyltransferase compare
H281DRAFT_02065 -2.3 -3.4 rfaE bifunctional protein, domain II compare
H281DRAFT_00116 -2.3 -1.7 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_02201 -2.3 -3.3 hypothetical protein compare
H281DRAFT_04553 -2.3 -3.5 ketol-acid reductoisomerase compare
H281DRAFT_04635 -2.2 -1.8 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_05618 -2.1 -9.9 outer membrane protein compare
H281DRAFT_04719 -2.1 -4.2 TolB protein compare
H281DRAFT_02008 -2.0 -4.8 phosphocarrier protein compare
H281DRAFT_04189 -2.0 -4.7 pyruvate kinase compare
H281DRAFT_06065 -2.0 -6.5 tryptophan synthase, alpha chain compare
H281DRAFT_01985 -2.0 -9.7 protoheme IX farnesyltransferase compare
H281DRAFT_05921 -1.9 -6.3 Sugar phosphate permease compare
H281DRAFT_03006 -1.9 -6.8 transcriptional regulator, GntR family compare
H281DRAFT_00395 -1.9 -7.0 hydroxymethylpyrimidine synthase compare
H281DRAFT_00113 -1.8 -4.4 transcriptional regulator, LysR family compare
H281DRAFT_00842 -1.8 -7.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_06008 -1.8 -6.5 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_00642 -1.8 -5.9 2-deoxy-D-ribonate transporter (from data) compare
H281DRAFT_00854 -1.8 -5.2 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_03567 -1.7 -7.4 transcriptional regulator, GntR family compare
H281DRAFT_01684 -1.7 -5.9 transcriptional regulator, TetR family compare
H281DRAFT_05298 -1.7 -1.8 amino acid ABC transporter membrane protein 2, PAAT family compare
H281DRAFT_02000 -1.7 -4.1 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_04071 -1.6 -9.4 quinolinate synthetase compare
H281DRAFT_04835 -1.6 -3.0 hypothetical protein compare
H281DRAFT_06027 -1.6 -10.9 AMP nucleosidase compare
H281DRAFT_05974 -1.6 -1.9 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_01935 -1.5 -6.0 Tetratricopeptide repeat-containing protein compare
H281DRAFT_01993 -1.5 -8.3 cytochrome c oxidase subunit 1 compare
H281DRAFT_00501 -1.5 -5.3 Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily compare
H281DRAFT_02543 -1.5 -4.1 GntR family transcriptional regulator compare
H281DRAFT_06048 -1.5 -6.9 starch synthase (maltosyl-transferring) compare
H281DRAFT_02036 -1.5 -4.5 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_04087 -1.4 -1.9 hypothetical protein compare
H281DRAFT_01679 -1.4 -1.9 shikimate dehydrogenase (EC 1.1.1.25) compare
H281DRAFT_06276 -1.4 -5.9 hypothetical protein compare
H281DRAFT_01986 -1.4 -4.8 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_01111 -1.4 -2.2 transcriptional regulator, DeoR family compare
H281DRAFT_06273 -1.4 -2.3 AmpD protein compare
H281DRAFT_02670 -1.4 -1.6 transcriptional regulator, GntR family compare
H281DRAFT_03094 -1.3 -1.2 transcriptional regulator, MarR family compare
H281DRAFT_02956 -1.3 -3.0 transcriptional regulator, GntR family compare
H281DRAFT_00851 -1.3 -5.7 polyhydroxyalkanoate synthase compare
H281DRAFT_01125 -1.3 -1.4 protein of unknown function (DUF2760) compare
H281DRAFT_04069 -1.3 -9.2 L-aspartate oxidase compare
H281DRAFT_00471 -1.3 -4.6 transcriptional regulator, IclR family compare
H281DRAFT_04359 -1.3 -2.1 Glutaredoxin and related proteins compare
H281DRAFT_05986 -1.2 -2.1 transcriptional regulator, TetR family compare
H281DRAFT_04722 -1.2 -2.9 Cell division and transport-associated protein TolQ compare
H281DRAFT_04070 -1.2 -4.4 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_06277 -1.2 -4.0 hypothetical protein compare
H281DRAFT_00291 -1.2 -2.4 Cytochrome c553 compare
H281DRAFT_03752 -1.2 -2.9 transcriptional regulator, IclR family compare
H281DRAFT_00840 -1.2 -3.7 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase compare
H281DRAFT_06023 -1.2 -2.9 hypothetical protein compare
H281DRAFT_03072 -1.2 -3.9 Signal transduction histidine kinase compare
H281DRAFT_01809 -1.1 -1.9 3-dehydroquinate dehydratase compare
H281DRAFT_06441 -1.1 -1.6 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_02530 -1.1 -2.8 transcriptional regulator, IclR family compare
H281DRAFT_04920 -1.1 -2.8 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_05800 -1.1 -2.9 putative membrane protein compare
H281DRAFT_05437 -1.1 -3.0 Sugar phosphate permease compare
H281DRAFT_04670 -1.1 -3.8 tRNA-guanine transglycosylase compare
H281DRAFT_04225 -1.1 -3.4 transcriptional regulator, DeoR family compare
H281DRAFT_00643 -1.1 -2.5 3-oxoacyl-[acyl-carrier-protein] reductase compare
H281DRAFT_01990 -1.1 -4.9 cytochrome c oxidase subunit 3 compare
H281DRAFT_01382 -1.1 -1.5 Cellulose biosynthesis protein BcsR compare
H281DRAFT_04893 -1.1 -2.2 transcriptional regulator, LysR family compare
H281DRAFT_03384 -1.1 -1.4 Cytochrome c, mono- and diheme variants compare
H281DRAFT_01069 -1.1 -1.8 Cytosine/adenosine deaminase compare
H281DRAFT_04896 -1.0 -2.0 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05086 -1.0 -1.9 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_03306 -1.0 -3.3 Cytochrome c, mono- and diheme variants compare
H281DRAFT_03130 -1.0 -1.3 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_03988 -1.0 -7.2 alanyl aminopeptidase. Metallo peptidase. MEROPS family M01 compare
H281DRAFT_05071 -1.0 -2.2 ammonium transporter compare
H281DRAFT_02422 -1.0 -1.7 hypothetical protein compare
H281DRAFT_06506 -1.0 -2.0 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02731 -1.0 -2.0 hypothetical protein compare
H281DRAFT_03297 -1.0 -1.5 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_03810 -1.0 -1.4 citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family compare
H281DRAFT_06037 -1.0 -2.0 molybdate transport system substrate-binding protein compare
H281DRAFT_02910 -1.0 -1.6 conserved hypothetical protein compare
H281DRAFT_00175 -1.0 -2.8 DNA translocase FtsK compare
H281DRAFT_00976 -1.0 -1.6 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare
H281DRAFT_00008 -1.0 -1.2 hypothetical protein compare
H281DRAFT_01443 -1.0 -2.0 RND family efflux transporter, MFP subunit compare
H281DRAFT_01994 -0.9 -5.3 cytochrome c oxidase subunit 2 compare
H281DRAFT_02948 -0.9 -2.6 metabolite-proton symporter compare
H281DRAFT_03304 -0.9 -1.6 amidohydrolase, PncC family compare
H281DRAFT_00290 -0.9 -1.5 Cytochrome c553 compare
H281DRAFT_05814 -0.9 -5.1 Predicted transcription regulator, contains HTH domain, MarR family compare
H281DRAFT_04871 -0.9 -2.7 urocanate hydratase compare
H281DRAFT_03292 -0.9 -1.3 Mn-containing catalase compare
H281DRAFT_05943 -0.9 -1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_04075 -0.9 -4.2 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
H281DRAFT_05476 -0.9 -2.1 Short-chain dehydrogenase compare
H281DRAFT_06105 -0.9 -4.2 transcriptional regulator, GntR family compare
H281DRAFT_05315 -0.9 -1.7 5-dehydro-4-deoxy-D-glucarate aldolase (EC 4.1.2.20) compare
H281DRAFT_04302 -0.9 -2.0 molybdopterin adenylyltransferase compare
H281DRAFT_05912 -0.9 -2.7 transcriptional regulator, TetR family compare
H281DRAFT_00877 -0.9 -1.9 large conductance mechanosensitive channel compare
H281DRAFT_02478 -0.9 -2.7 formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
H281DRAFT_00755 -0.9 -2.6 transcriptional regulator, TetR family compare
H281DRAFT_01745 -0.9 -1.5 transcriptional regulator, LacI family compare
H281DRAFT_05346 -0.9 -3.9 Glutathione S-transferase compare
H281DRAFT_00286 -0.9 -1.1 transaldolase compare
H281DRAFT_05125 -0.9 -4.1 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_03917 -0.8 -1.1 Uncharacterized integral membrane protein compare
H281DRAFT_03163 -0.8 -2.1 Protein of unknown function (DUF3348) compare
H281DRAFT_02549 -0.8 -1.5 putative oxidoreductase compare
H281DRAFT_04640 -0.8 -2.5 dimethyladenosine transferase compare
H281DRAFT_03834 -0.8 -1.5 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_04851 -0.8 -2.9 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_03203 -0.8 -2.1 hypothetical protein compare
H281DRAFT_05902 -0.8 -1.5 2-Methylisocitrate lyase, PEP mutase family compare
H281DRAFT_05873 -0.8 -1.6 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_04346 -0.8 -1.3 uncharacterized protein compare
H281DRAFT_04279 -0.8 -2.2 transcriptional regulator, RpiR family compare
H281DRAFT_01566 -0.8 -1.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06480 -0.8 -1.0 arginine succinyltransferase compare
H281DRAFT_05060 -0.8 -1.7 Permeases of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_05046 -0.8 -3.4 Signal transduction histidine kinase compare
H281DRAFT_03067 -0.8 -2.1 peroxiredoxin, Ohr subfamily compare
H281DRAFT_02449 -0.8 -2.3 hypothetical protein compare
H281DRAFT_01837 -0.8 -1.2 hypothetical protein compare
H281DRAFT_01321 -0.8 -1.7 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_06517 -0.8 -1.4 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04208 -0.8 -2.2 RecA protein compare
H281DRAFT_02934 -0.8 -1.8 hypothetical protein compare
H281DRAFT_00050 -0.8 -0.9 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_02430 -0.8 -3.7 transketolase subunit A compare
H281DRAFT_05879 -0.8 -1.8 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_02571 -0.8 -1.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_00819 -0.8 -1.3 competence protein ComEA compare
H281DRAFT_00940 -0.8 -1.5 psiF repeat-containing protein compare
H281DRAFT_01896 -0.8 -2.8 EcsC protein family protein compare
H281DRAFT_06322 -0.8 -1.7 LPS-assembly lipoprotein compare
H281DRAFT_04707 -0.8 -2.8 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_00744 -0.7 -3.6 arginine-tRNA-protein transferase compare
H281DRAFT_05852 -0.7 -3.5 transcriptional regulator, TetR family compare
H281DRAFT_01914 -0.7 -3.3 Predicted PurR-regulated permease PerM compare
H281DRAFT_02205 -0.7 -0.6 transcriptional regulator, TraR/DksA family compare
H281DRAFT_02610 -0.7 -1.8 methyl-accepting chemotaxis sensory transducer with Cache sensor compare
H281DRAFT_02058 -0.7 -0.8 cholesterol transport system auxiliary component compare
H281DRAFT_01522 -0.7 -1.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_02512 -0.7 -1.4 LysR family transcriptional regulator, glycine cleavage system transcriptional activator compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms