Experiment set4IT084 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxy-D-ribonic acid lithium salt 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_05561 +2.8 15.0 transcriptional regulator, TetR family compare
H281DRAFT_01413 +1.5 2.5 hypothetical protein compare
H281DRAFT_02683 +1.5 2.1 xanthine dehydrogenase accessory factor compare
H281DRAFT_01184 +1.4 1.8 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05920 +1.3 6.1 transcriptional regulator, LacI family compare
H281DRAFT_05214 +1.3 3.4 transcriptional regulator, LacI family compare
H281DRAFT_05778 +1.3 2.7 flagellar motor switch protein FliN/FliY compare
H281DRAFT_00998 +1.2 1.2 outer membrane protein, multidrug efflux system compare
H281DRAFT_03440 +1.2 2.2 PAP2 superfamily protein compare
H281DRAFT_06120 +1.2 1.4 hypothetical protein compare
H281DRAFT_01390 +1.2 1.9 hypothetical protein compare
H281DRAFT_01160 +1.2 2.4 transcriptional regulator, IclR family compare
H281DRAFT_00379 +1.2 1.6 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_03460 +1.1 1.5 Protein of unknown function (DUF2950) compare
H281DRAFT_02791 +1.1 1.9 apolipoprotein D and lipocalin family protein compare
H281DRAFT_05465 +1.1 3.7 hypothetical protein compare
H281DRAFT_05756 +1.1 2.2 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_05376 +1.1 2.7 hypothetical protein compare
H281DRAFT_06069 +1.1 3.8 tRNA pseudouridine38-40 synthase compare
H281DRAFT_00359 +1.1 2.4 Acyl-CoA dehydrogenase compare
H281DRAFT_03849 +1.0 2.2 protein of unknown function (DUF4863) compare
H281DRAFT_06477 +1.0 2.1 transcriptional regulator, AraC family compare
H281DRAFT_04201 +1.0 1.9 O-antigen ligase compare
H281DRAFT_06511 +1.0 1.5 reactive intermediate/imine deaminase compare
H281DRAFT_05005 +1.0 1.9 type III secretion protein HrpB1 compare
H281DRAFT_00601 +1.0 2.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_04857 +1.0 1.6 hypothetical protein compare
H281DRAFT_00870 +1.0 2.3 putative ABC transport system ATP-binding protein compare
H281DRAFT_02753 +0.9 2.1 Predicted dehydrogenase compare
H281DRAFT_00777 +0.9 2.6 SOS-response transcriptional repressor, LexA compare
H281DRAFT_02052 +0.9 1.9 hypothetical protein compare
H281DRAFT_00759 +0.9 3.5 sulfonate transport system permease protein compare
H281DRAFT_02950 +0.9 2.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_06000 +0.9 1.9 transcriptional regulator, AraC family compare
H281DRAFT_02702 +0.9 2.8 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_04100 +0.9 2.4 Protein of unknown function (DUF2917) compare
H281DRAFT_03023 +0.9 1.1 Protein of unknown function (DUF2866) compare
H281DRAFT_05753 +0.9 4.4 flagellar biosynthesis protein FlhA compare
H281DRAFT_02503 +0.9 2.3 Peroxiredoxin compare
H281DRAFT_00487 +0.9 1.4 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_06003 +0.9 1.8 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_00377 +0.9 1.6 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_04990 +0.9 2.3 type III secretion translocon protein HrpF compare
H281DRAFT_06419 +0.8 1.3 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_01305 +0.8 2.2 hypothetical protein compare
H281DRAFT_03733 +0.8 1.4 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_03443 +0.8 1.8 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_05021 +0.8 1.5 Response regulator compare
H281DRAFT_04051 +0.8 1.9 transcriptional regulator, RpiR family compare
H281DRAFT_02193 +0.8 1.4 hypothetical protein compare
H281DRAFT_01253 +0.8 2.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_04781 +0.8 1.2 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_01889 +0.8 2.1 7-cyano-7-deazaguanine reductase compare
H281DRAFT_06578 +0.8 2.8 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_02508 +0.8 1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_05775 +0.8 3.9 flagellar biosynthetic protein FliQ compare
H281DRAFT_05079 +0.8 3.3 small conductance mechanosensitive channel compare
H281DRAFT_00285 +0.8 2.6 PhnB protein compare
H281DRAFT_01011 +0.8 1.8 Uncharacterized membrane protein YkgB compare
H281DRAFT_04875 +0.8 1.4 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_04855 +0.8 1.3 hypothetical protein compare
H281DRAFT_01436 +0.8 1.4 NTE family protein compare
H281DRAFT_00298 +0.8 1.4 hypothetical protein compare
H281DRAFT_04858 +0.8 1.1 hypothetical protein compare
H281DRAFT_04601 +0.8 3.2 hypothetical protein compare
H281DRAFT_05445 +0.8 1.3 protein of unknown function (DUF4440) compare
H281DRAFT_00130 +0.8 1.9 Predicted secreted protein compare
H281DRAFT_01223 +0.8 3.1 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_00106 +0.8 2.5 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01661 +0.7 2.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05289 +0.7 2.1 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_03061 +0.7 1.8 hypothetical protein compare
H281DRAFT_00972 +0.7 1.7 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_01766 +0.7 1.5 cytochrome c oxidase subunit 2 compare
H281DRAFT_03142 +0.7 2.1 Lipid-binding SYLF domain-containing protein compare
H281DRAFT_05122 +0.7 2.3 host factor-I protein compare
H281DRAFT_06018 +0.7 5.0 choline monooxygenase compare
H281DRAFT_04446 +0.7 3.3 transcriptional regulator, LysR family compare
H281DRAFT_00048 +0.7 2.1 hypothetical protein compare
H281DRAFT_01880 +0.7 1.3 two component transcriptional regulator, LuxR family compare
H281DRAFT_00646 +0.7 2.2 transcriptional regulator, AraC family compare
H281DRAFT_05785 +0.7 3.9 flagellar motor switch protein FliG compare
H281DRAFT_03154 +0.7 1.2 two-component system, NarL family, sensor kinase compare
H281DRAFT_01151 +0.7 2.9 ceramide glucosyltransferase compare
H281DRAFT_01412 +0.7 1.4 Superinfection immunity protein compare
H281DRAFT_05372 +0.7 3.3 type VI secretion system protein ImpM compare
H281DRAFT_01838 +0.7 1.7 regulator RcnB of Ni and Co efflux compare
H281DRAFT_06285 +0.7 1.5 3-dehydroquinate dehydratase compare
H281DRAFT_05945 +0.7 1.8 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_03328 +0.7 1.7 hypothetical protein compare
H281DRAFT_04607 +0.7 1.3 hypothetical protein compare
H281DRAFT_02864 +0.7 2.0 precorrin-8X methylmutase compare
H281DRAFT_04228 +0.7 4.3 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_06567 +0.7 1.0 hypothetical protein compare
H281DRAFT_01101 +0.7 0.8 Small-conductance mechanosensitive channel compare
H281DRAFT_03411 +0.7 2.1 hypothetical protein compare
H281DRAFT_00240 +0.7 4.7 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_05159 +0.7 1.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_00244 +0.7 4.1 trehalose 6-phosphate synthase compare
H281DRAFT_05371 +0.7 3.5 OmpA-OmpF porin, OOP family compare
H281DRAFT_00039 +0.7 1.8 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
H281DRAFT_02332 +0.7 3.3 L-arabinose-binding protein compare
H281DRAFT_00242 +0.7 3.6 hypothetical protein compare
H281DRAFT_06135 +0.7 1.1 hypothetical protein compare
H281DRAFT_03728 +0.7 1.4 Uncharacterized conserved protein, DUF1697 family compare
H281DRAFT_05248 +0.6 0.8 hypothetical protein compare
H281DRAFT_01599 +0.6 1.2 GTP cyclohydrolase I compare
H281DRAFT_01483 +0.6 1.3 hypothetical protein compare
H281DRAFT_06238 +0.6 1.0 hypothetical protein compare
H281DRAFT_04947 +0.6 1.4 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_00722 +0.6 1.0 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_00658 +0.6 1.5 transcriptional regulator, IclR family compare
H281DRAFT_00140 +0.6 2.3 cobalamin-5'-phosphate synthase compare
H281DRAFT_00554 +0.6 2.0 DUF971 family protein compare
H281DRAFT_04391 +0.6 4.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04008 +0.6 2.0 RNAse PH compare
H281DRAFT_05144 +0.6 2.4 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05225 +0.6 1.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01028 +0.6 0.9 peptide/nickel transport system permease protein compare
H281DRAFT_00255 +0.6 1.4 hypothetical protein compare
H281DRAFT_03159 +0.6 0.9 hypothetical protein compare
H281DRAFT_05434 +0.6 2.5 Predicted amidohydrolase compare
H281DRAFT_00488 +0.6 2.0 exonuclease RecJ compare
H281DRAFT_03190 +0.6 2.7 multidrug efflux pump compare
H281DRAFT_01403 +0.6 1.4 hypothetical protein compare
H281DRAFT_06079 +0.6 1.7 Uncharacterized membrane protein, DUF373 family compare
H281DRAFT_05764 +0.6 2.2 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_05098 +0.6 0.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05776 +0.6 2.3 flagellar biosynthetic protein FliP compare
H281DRAFT_06253 +0.6 4.0 cell division protein ZapD compare
H281DRAFT_01621 +0.6 1.3 transcriptional regulator, AraC family compare
H281DRAFT_06002 +0.6 2.3 NADPH:quinone reductase compare
H281DRAFT_03147 +0.6 1.0 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_01373 +0.6 1.7 protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8) compare
H281DRAFT_03199 +0.6 2.5 flagellar transcriptional activator FlhD compare
H281DRAFT_00097 +0.6 2.2 Protein of unknown function (DUF2844) compare
H281DRAFT_01430 +0.6 2.3 succinoglycan biosynthesis protein ExoO compare
H281DRAFT_01612 +0.6 2.9 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_03155 +0.6 1.7 Protein of unknown function (DUF3311) compare
H281DRAFT_02685 +0.6 2.6 Uncharacterized damage-inducible protein DinB (forms a four-helix bundle) compare
H281DRAFT_03409 +0.6 0.9 Protein of unknown function (DUF3072) compare
H281DRAFT_04270 +0.6 3.2 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_01273 +0.6 1.6 feruloyl esterase compare
H281DRAFT_05752 +0.6 3.1 flagellar biosynthetic protein FlhB compare
H281DRAFT_03233 +0.6 2.0 cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases compare
H281DRAFT_01447 +0.6 1.7 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_02830 +0.6 1.8 hypothetical protein compare
H281DRAFT_02232 +0.6 3.4 preQ(0) biosynthesis protein QueC compare
H281DRAFT_00731 +0.6 1.2 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01262 +0.6 1.2 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_02813 +0.6 1.1 Uncharacterized protein conserved in bacteria compare
H281DRAFT_05285 +0.6 1.6 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_00989 +0.6 1.6 glycine betaine/proline transport system substrate-binding protein compare
H281DRAFT_05483 +0.6 1.0 protein of unknown function (DUF1840) compare
H281DRAFT_02705 +0.6 1.3 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_01701 +0.6 1.6 hypothetical protein compare
H281DRAFT_00666 +0.6 2.8 altronate hydrolase compare
H281DRAFT_04002 +0.6 1.2 tRNA_Arg_ACG compare
H281DRAFT_05545 +0.6 1.0 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_01927 +0.6 4.8 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_01666 +0.6 1.7 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) compare
H281DRAFT_05944 +0.6 0.9 DNA-binding transcriptional regulator, FadR family compare
H281DRAFT_02375 +0.6 2.8 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_03885 +0.6 1.1 Protein of unknown function (DUF1656) compare
H281DRAFT_03144 +0.6 1.4 putative phosphoesterase compare
H281DRAFT_05763 +0.6 2.7 flagellar basal-body rod protein FlgC compare
H281DRAFT_01854 +0.6 2.8 isoamylase compare
H281DRAFT_04400 +0.6 4.3 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_05779 +0.6 3.9 flagellar motor switch protein FliM compare
H281DRAFT_02295 +0.6 1.0 hypothetical protein compare
H281DRAFT_03739 +0.6 1.4 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_05770 +0.6 3.3 flagellar protein FlgJ compare
H281DRAFT_00875 +0.6 2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_01225 +0.6 1.8 L-rhamnose mutarotase compare
H281DRAFT_02472 +0.6 2.8 Fe-S oxidoreductase compare
H281DRAFT_06070 +0.6 1.4 FimV C-terminal domain-containing protein compare
H281DRAFT_04876 +0.6 1.5 hypothetical protein compare
H281DRAFT_00896 +0.6 1.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_05769 +0.6 3.6 flagellar P-ring protein precursor FlgI compare
H281DRAFT_05724 +0.6 2.7 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_04390 +0.6 3.7 ATP-binding cassette, subfamily B compare
H281DRAFT_02166 +0.6 1.8 High potential iron-sulfur protein compare
H281DRAFT_06182 +0.6 2.1 hypothetical protein compare
H281DRAFT_05786 +0.6 3.5 flagellar M-ring protein FliF compare
H281DRAFT_03273 +0.6 1.2 Uncharacterized membrane protein YqjE compare
H281DRAFT_03036 +0.6 1.4 hypothetical protein compare
H281DRAFT_01078 +0.6 1.0 dihydroxycyclohexadiene carboxylate dehydrogenase compare
H281DRAFT_01777 +0.6 2.2 diguanylate cyclase compare
H281DRAFT_05521 +0.6 1.4 3-hydroxyacyl-CoA dehydrogenase compare
H281DRAFT_00752 +0.6 1.6 hypothetical protein compare
H281DRAFT_03717 +0.5 1.0 Rhodanese-related sulfurtransferase compare
H281DRAFT_05438 +0.5 1.0 transcriptional regulator, IclR family compare
H281DRAFT_06266 +0.5 1.7 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_04465 +0.5 1.7 myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase compare
H281DRAFT_05212 +0.5 2.4 Sugar phosphate permease compare
H281DRAFT_00561 +0.5 2.5 microcin C transport system permease protein compare
H281DRAFT_01486 +0.5 1.4 hypothetical protein compare
H281DRAFT_00378 +0.5 1.0 glutamate synthase (NADPH/NADH) small chain compare
H281DRAFT_01974 +0.5 2.3 Lipid A 3-O-deacylase (PagL) compare
H281DRAFT_05761 +0.5 3.4 flagella basal body P-ring formation protein FlgA compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source 2-Deoxy-D-ribonic acid lithium salt in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2-Deoxy-D-ribonic acid lithium salt across organisms