Experiment set4IT083 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Cytidine carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.1 -2.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.6 -9.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1408 -3.6 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_15 -3.6 -2.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_5666 -3.3 -3.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1624 -3.2 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1534 -3.2 -16.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2384 -3.1 -9.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1831 -3.1 -8.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2010 -3.1 -4.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2303 -3.0 -13.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1307 -3.0 -2.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3697 -2.9 -8.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_6031 -2.9 -4.2 Ribokinase (EC 2.7.1.15) (from data) compare
Pf1N1B4_2545 -2.9 -10.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1830 -2.9 -8.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_4678 -2.8 -3.3 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_1315 -2.8 -6.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1067 -2.8 -6.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1533 -2.8 -6.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_350 -2.7 -7.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_742 -2.7 -5.1 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1626 -2.7 -6.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2549 -2.6 -7.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_4299 -2.5 -3.2 sensor histidine kinase compare
Pf1N1B4_2858 -2.5 -8.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2338 -2.5 -6.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1565 -2.5 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1627 -2.5 -4.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_58 -2.5 -5.7 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_12 -2.5 -5.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2548 -2.5 -6.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3038 -2.4 -5.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2850 -2.4 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2272 -2.3 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_4065 -2.3 -6.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1617 -2.2 -7.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2878 -2.2 -7.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2879 -2.2 -5.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_6034 -2.2 -4.4 D-ribose ABC transporter, ATPase component RbsA (from data) compare
Pf1N1B4_2009 -2.1 -4.2 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1434 -2.1 -6.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_952 -2.1 -4.7 Cell division protein MraZ compare
Pf1N1B4_847 -2.0 -7.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2337 -2.0 -4.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5665 -2.0 -4.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1234 -1.9 -4.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2005 -1.9 -2.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_5926 -1.9 -10.1 hypothetical protein compare
Pf1N1B4_3812 -1.9 -7.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2011 -1.9 -6.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2283 -1.9 -2.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_6035 -1.9 -2.8 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_2859 -1.8 -11.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4506 -1.8 -3.2 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_2381 -1.8 -12.1 Protein yceI precursor compare
Pf1N1B4_1683 -1.8 -2.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_762 -1.7 -5.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_5624 -1.7 -2.8 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_1147 -1.7 -5.7 Fructose repressor FruR, LacI family compare
Pf1N1B4_5100 -1.7 -2.5 Transcriptional regulator ahyR/asaR family compare
Pf1N1B4_4494 -1.6 -2.9 hypothetical protein compare
Pf1N1B4_4038 -1.6 -2.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2493 -1.6 -2.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_4587 -1.6 -2.2 probable dioxygenase compare
Pf1N1B4_5927 -1.6 -12.0 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3849 -1.6 -3.4 Transcriptional regulator, GntR family compare
Pf1N1B4_2380 -1.6 -10.1 Cytochrome B561 compare
Pf1N1B4_4477 -1.5 -2.6 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_275 -1.5 -1.6 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_175 -1.5 -2.6 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3290 -1.5 -2.7 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_2487 -1.5 -6.4 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_3833 -1.5 -6.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2874 -1.5 -2.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_958 -1.5 -2.2 Stringent starvation protein B compare
Pf1N1B4_267 -1.5 -2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_5860 -1.4 -2.2 Two-component response regulator compare
Pf1N1B4_2208 -1.4 -5.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_3506 -1.4 -5.0 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1057 -1.4 -2.1 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3627 -1.4 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_962 -1.4 -7.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_5059 -1.3 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_1 -1.3 -2.1 Colicin V production protein compare
Pf1N1B4_1566 -1.3 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2284 -1.3 -3.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4107 -1.3 -2.0 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3430 -1.3 -8.7 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf1N1B4_5925 -1.3 -4.1 hypothetical protein compare
Pf1N1B4_3726 -1.3 -4.0 Sensory box histidine kinase/response regulator compare
Pf1N1B4_339 -1.3 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_381 -1.3 -2.0 hypothetical protein compare
Pf1N1B4_3408 -1.3 -1.9 Transcriptional regulator, AraC family compare
Pf1N1B4_3906 -1.3 -2.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1584 -1.3 -2.0 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_1568 -1.3 -3.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_4799 -1.3 -2.1 Multidrug resistance protein B compare
Pf1N1B4_373 -1.3 -2.6 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_3081 -1.2 -10.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4887 -1.2 -2.2 Pirin compare
Pf1N1B4_1126 -1.2 -2.5 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_753 -1.2 -2.5 hypothetical protein compare
Pf1N1B4_3538 -1.2 -1.6 Transcriptional regulator, AraC family compare
Pf1N1B4_1936 -1.2 -4.0 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_3305 -1.2 -2.2 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_4039 -1.1 -4.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4676 -1.1 -3.4 Alpha-amylase (EC 3.2.1.1) compare
Pf1N1B4_4385 -1.1 -1.8 Gfa-like protein compare
Pf1N1B4_2282 -1.1 -5.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4362 -1.1 -3.1 hypothetical protein compare
Pf1N1B4_5924 -1.1 -5.7 hypothetical protein compare
Pf1N1B4_4585 -1.1 -1.8 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_960 -1.1 -6.5 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_5371 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_232 -1.1 -2.0 DNA-binding response regulator, LuxR family compare
Pf1N1B4_412 -1.1 -1.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_1317 -1.1 -2.3 Sensor histidine kinase/response regulator compare
Pf1N1B4_2860 -1.1 -4.1 FIG00954153: hypothetical protein compare
Pf1N1B4_1052 -1.1 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_1625 -1.1 -3.9 FIG00956267: hypothetical protein compare
Pf1N1B4_1569 -1.0 -7.1 Twin-arginine translocation protein TatC compare
Pf1N1B4_5769 -1.0 -1.5 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_2853 -1.0 -1.6 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_961 -1.0 -7.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_344 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_4667 -1.0 -2.3 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_4515 -1.0 -2.3 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_1328 -1.0 -2.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_4030 -1.0 -1.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_5620 -1.0 -1.8 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_2060 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_4493 -1.0 -2.4 FIG00443700: hypothetical protein compare
Pf1N1B4_3751 -1.0 -1.6 FIG00953060: hypothetical protein compare
Pf1N1B4_652 -1.0 -5.6 Sensory box histidine kinase compare
Pf1N1B4_4957 -1.0 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_5224 -1.0 -2.1 tRNA-Arg-CCT compare
Pf1N1B4_3484 -1.0 -3.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_1590 -1.0 -3.4 Histidine utilization repressor compare
Pf1N1B4_3445 -1.0 -2.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5991 -1.0 -1.5 Transcriptional regulator, AraC family compare
Pf1N1B4_1239 -1.0 -4.1 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
Pf1N1B4_3468 -1.0 -1.3 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1113 -1.0 -3.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_3328 -1.0 -1.6 Rhodanese-like domain protein compare
Pf1N1B4_2547 -1.0 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1238 -1.0 -5.8 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Pf1N1B4_5187 -1.0 -1.0 5S RNA compare
Pf1N1B4_886 -1.0 -1.7 FIG137478: Hypothetical protein compare
Pf1N1B4_255 -1.0 -3.1 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_2227 -1.0 -1.6 FIG019278: hypothetical protein compare
Pf1N1B4_4491 -0.9 -2.3 ABC transporter permease protein compare
Pf1N1B4_430 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_4028 -0.9 -2.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3725 -0.9 -3.2 Sensory box histidine kinase/response regulator compare
Pf1N1B4_3281 -0.9 -2.4 AidA compare
Pf1N1B4_3091 -0.9 -2.4 Membrane-associated zinc metalloprotease compare
Pf1N1B4_1311 -0.9 -2.9 Probable transmembrane protein compare
Pf1N1B4_1240 -0.9 -5.0 LysR family transcriptional regulator PA0133 compare
Pf1N1B4_4833 -0.9 -2.2 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5002 -0.9 -3.0 Protein rarD compare
Pf1N1B4_3889 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_2885 -0.9 -3.4 Paraquat-inducible protein A compare
Pf1N1B4_647 -0.9 -4.3 hypothetical protein compare
Pf1N1B4_1266 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_1906 -0.9 -2.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2105 -0.9 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_4489 -0.9 -1.8 Transcriptional regulator, LuxR family compare
Pf1N1B4_419 -0.9 -1.3 Transcriptional regulator, TetR family compare
Pf1N1B4_2526 -0.9 -6.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_875 -0.9 -1.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5249 -0.9 -2.1 Outer membrane protein A precursor compare
Pf1N1B4_2296 -0.9 -2.2 FIG00350678: hypothetical protein compare
Pf1N1B4_22 -0.9 -4.4 Transcriptional regulator, TetR family compare
Pf1N1B4_298 -0.9 -1.9 Transcription elongation factor GreB compare
Pf1N1B4_3264 -0.9 -2.4 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1135 -0.9 -1.8 FIG00960055: hypothetical protein compare
Pf1N1B4_4501 -0.9 -3.8 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf1N1B4_1878 -0.9 -4.9 Cytochrome c4 compare
Pf1N1B4_4990 -0.9 -1.4 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_5591 -0.8 -1.5 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_122 -0.8 -1.9 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_2706 -0.8 -1.7 FIG00954871: hypothetical protein compare
Pf1N1B4_2851 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_1402 -0.8 -2.2 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_3078 -0.8 -1.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_722 -0.8 -1.3 SAM-dependent methyltransferases compare
Pf1N1B4_3768 -0.8 -1.7 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_284 -0.8 -6.0 Universal stress protein family compare
Pf1N1B4_5386 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4134 -0.8 -1.6 Na+ driven multidrug efflux pump compare
Pf1N1B4_3981 -0.8 -1.3 Predicted carboxypeptidase compare
Pf1N1B4_4195 -0.8 -2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_240 -0.8 -1.2 Transcriptional regulators compare
Pf1N1B4_4208 -0.8 -1.3 organophosphate pesticide hydrolase compare
Pf1N1B4_5302 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_3518 -0.8 -1.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_5815 -0.8 -1.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_758 -0.8 -2.2 Bacterioferritin compare
Pf1N1B4_4897 -0.8 -1.5 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Cytidine in Pseudomonas fluorescens FW300-N1B4

For carbon source Cytidine across organisms