Experiment set4IT083 for Pseudomonas fluorescens FW300-N1B4

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Cytidine carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_3115 +3.4 19.5 RNA polymerase sigma factor RpoS compare
Pf1N1B4_5055 +1.9 5.7 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_218 +1.7 9.4 Periplasmic binding protein compare
Pf1N1B4_688 +1.4 2.6 FIG00955483: hypothetical protein compare
Pf1N1B4_3991 +1.4 2.3 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_3911 +1.3 4.4 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_407 +1.3 1.9 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_6041 +1.2 2.0 Carbon storage regulator compare
Pf1N1B4_4687 +1.2 6.4 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf1N1B4_5763 +1.2 2.7 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_4532 +1.2 2.3 ClpB protein compare
Pf1N1B4_2106 +1.2 3.1 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1555 +1.2 7.6 Polyhydroxyalkanoic acid synthase compare
Pf1N1B4_3153 +1.1 2.3 hypothetical protein compare
Pf1N1B4_3993 +1.1 3.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_2958 +1.1 2.3 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_695 +1.1 2.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_1655 +1.1 8.4 FIG00553872: hypothetical protein compare
Pf1N1B4_291 +1.1 6.2 Major outer membrane lipoprotein I compare
Pf1N1B4_761 +1.1 2.3 FIG00954879: hypothetical protein compare
Pf1N1B4_5056 +1.1 3.3 Uncharacterized glutathione S-transferase-like protein compare
Pf1N1B4_1652 +1.1 7.1 transcriptional regulator, LysR family compare
Pf1N1B4_5820 +1.0 2.5 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_4220 +1.0 2.2 Maebl compare
Pf1N1B4_1612 +1.0 2.4 FIG00955429: hypothetical protein compare
Pf1N1B4_4818 +1.0 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3783 +1.0 3.1 FIG00958237: hypothetical protein compare
Pf1N1B4_1721 +1.0 2.3 DNA-binding heavy metal response regulator compare
Pf1N1B4_3352 +1.0 2.8 tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34) compare
Pf1N1B4_288 +1.0 7.4 FIG00958794: hypothetical protein compare
Pf1N1B4_4100 +1.0 2.2 probable transmembrane protein compare
Pf1N1B4_2177 +1.0 1.3 FIG00953342: hypothetical protein compare
Pf1N1B4_4402 +1.0 1.8 SoxH protein, homolog compare
Pf1N1B4_287 +1.0 6.5 Possible periplasmic thiredoxin compare
Pf1N1B4_3435 +1.0 1.9 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_2736 +1.0 2.1 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_1557 +1.0 7.6 Polyhydroxyalkanoic acid synthase compare
Pf1N1B4_1765 +0.9 2.6 hypothetical protein compare
Pf1N1B4_5552 +0.9 2.1 hypothetical protein compare
Pf1N1B4_5668 +0.9 1.9 Peptidase, U7 family compare
Pf1N1B4_2047 +0.9 3.7 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_914 +0.9 3.2 ABC-type polar amino acid transport system, ATPase component compare
Pf1N1B4_2442 +0.9 1.9 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_290 +0.9 8.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5854 +0.9 3.1 FIG00960144: hypothetical protein compare
Pf1N1B4_5292 +0.9 2.0 hypothetical protein compare
Pf1N1B4_623 +0.9 1.8 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_164 +0.9 1.6 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_5588 +0.9 1.8 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf1N1B4_5871 +0.9 1.7 FIG00963848: hypothetical protein compare
Pf1N1B4_4869 +0.9 2.4 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_2281 +0.9 2.6 Predicted integral membrane protein compare
Pf1N1B4_5831 +0.9 2.9 SAM-dependent methyltransferases compare
Pf1N1B4_4568 +0.9 1.6 FIG00793915: hypothetical protein compare
Pf1N1B4_2102 +0.9 1.5 hypothetical protein compare
Pf1N1B4_4762 +0.9 2.4 hypothetical protein compare
Pf1N1B4_2269 +0.9 1.8 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_228 +0.8 2.0 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_3909 +0.8 1.6 Cell division inhibitor-related protein compare
Pf1N1B4_2870 +0.8 1.6 Regulator of competence-specific genes compare
Pf1N1B4_5995 +0.8 1.6 Transporter, MFS superfamily compare
Pf1N1B4_3389 +0.8 4.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf1N1B4_4076 +0.8 1.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_3831 +0.8 3.8 CmpX compare
Pf1N1B4_1279 +0.8 1.9 Flp pilus assembly protein TadB compare
Pf1N1B4_932 +0.8 1.3 FIG00963370: hypothetical protein compare
Pf1N1B4_4831 +0.8 1.5 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_5920 +0.8 1.7 Transcriptional regulator, AraC family compare
Pf1N1B4_3413 +0.8 1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_731 +0.8 2.1 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_5817 +0.8 1.5 Decarboxylase family protein compare
Pf1N1B4_4872 +0.8 1.6 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_5891 +0.8 2.0 FIG00961753: hypothetical protein compare
Pf1N1B4_3708 +0.8 2.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf1N1B4_4349 +0.8 2.0 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_4043 +0.8 2.0 Type II and III secretion system family protein compare
Pf1N1B4_5031 +0.8 2.0 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_2987 +0.8 2.4 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_2390 +0.8 2.2 probable membrane protein NMA1176 compare
Pf1N1B4_4603 +0.8 1.3 hypothetical protein compare
Pf1N1B4_4521 +0.8 2.1 Probable transmembrane protein compare
Pf1N1B4_5779 +0.8 1.4 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_77 +0.8 2.3 FIG00956064: hypothetical protein compare
Pf1N1B4_969 +0.8 7.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_2163 +0.7 1.4 hypothetical protein compare
Pf1N1B4_4826 +0.7 1.3 glutamine synthetase family protein compare
Pf1N1B4_2190 +0.7 4.4 Regulator of sigma D compare
Pf1N1B4_54 +0.7 2.5 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_3977 +0.7 1.8 RNA polymerase sigma-54 factor RpoN compare
Pf1N1B4_5886 +0.7 2.2 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) compare
Pf1N1B4_4552 +0.7 2.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_2072 +0.7 2.3 Phosphoprotein phosphatase PppA compare
Pf1N1B4_5560 +0.7 1.5 hypothetical protein compare
Pf1N1B4_1180 +0.7 1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_4459 +0.7 1.9 Thermostable hemolysin delta-VPH compare
Pf1N1B4_769 +0.7 3.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3229 +0.7 3.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1430 +0.7 1.7 Predicted signal transduction protein compare
Pf1N1B4_2925 +0.7 1.8 hypothetical protein compare
Pf1N1B4_1115 +0.7 4.9 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_3920 +0.7 1.8 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf1N1B4_4594 +0.7 1.4 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_5972 +0.7 1.4 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_5601 +0.7 2.3 FIG00966546: hypothetical protein compare
Pf1N1B4_3795 +0.7 1.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_286 +0.7 4.9 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Pf1N1B4_515 +0.7 1.7 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_3976 +0.7 3.5 Transmembrane regulator protein PrtR compare
Pf1N1B4_101 +0.7 1.6 hypothetical protein compare
Pf1N1B4_41 +0.7 1.6 hypothetical protein compare
Pf1N1B4_1466 +0.7 2.5 hypothetical protein compare
Pf1N1B4_973 +0.7 6.2 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_4836 +0.7 2.0 COG2879, Hypothetical small protein yjiX compare
Pf1N1B4_367 +0.7 2.9 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf1N1B4_5146 +0.7 1.2 Chromosome initiation inhibitor compare
Pf1N1B4_2356 +0.7 1.8 hypothetical protein compare
Pf1N1B4_1475 +0.7 3.5 FIG00962376: hypothetical protein compare
Pf1N1B4_628 +0.7 2.8 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_5112 +0.7 1.4 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_5447 +0.7 1.4 hypothetical protein compare
Pf1N1B4_736 +0.7 2.8 Electron transport complex protein RnfD compare
Pf1N1B4_4098 +0.7 3.6 Putative nucleoside transporter yegT compare
Pf1N1B4_3399 +0.7 2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3942 +0.7 2.1 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_903 +0.7 3.1 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) compare
Pf1N1B4_5930 +0.7 3.2 Exopolysaccharide production protein ExoZ compare
Pf1N1B4_3208 +0.7 2.7 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf1N1B4_2791 +0.6 1.0 Putative inner membrane protein (Fragment) compare
Pf1N1B4_2484 +0.6 1.8 hypothetical protein compare
Pf1N1B4_5708 +0.6 1.7 Transcriptional regulator, TetR family compare
Pf1N1B4_1246 +0.6 1.2 FIG00954047: hypothetical protein compare
Pf1N1B4_3764 +0.6 1.4 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_292 +0.6 6.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_4488 +0.6 2.1 Sensory box histidine kinase/response regulator compare
Pf1N1B4_5604 +0.6 1.5 Permeases of the major facilitator superfamily compare
Pf1N1B4_1782 +0.6 1.6 hypothetical protein compare
Pf1N1B4_131 +0.6 1.3 hypothetical protein compare
Pf1N1B4_5322 +0.6 1.6 hypothetical protein compare
Pf1N1B4_919 +0.6 1.3 hypothetical protein compare
Pf1N1B4_4394 +0.6 1.7 FIG00955080: hypothetical protein compare
Pf1N1B4_3561 +0.6 2.3 Xanthine transporter,putative compare
Pf1N1B4_5243 +0.6 2.0 hypothetical protein compare
Pf1N1B4_5984 +0.6 2.3 FIG005548: transport protein compare
Pf1N1B4_972 +0.6 5.8 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_2835 +0.6 2.3 hypothetical protein compare
Pf1N1B4_970 +0.6 4.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_4783 +0.6 1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_971 +0.6 5.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_5726 +0.6 1.8 Ferredoxin compare
Pf1N1B4_3508 +0.6 2.1 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_603 +0.6 1.7 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2928 +0.6 3.1 Transcriptional regulator, MerR family, associated with photolyase compare
Pf1N1B4_5600 +0.6 2.0 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_5801 +0.6 1.5 hypothetical protein compare
Pf1N1B4_31 +0.6 1.7 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf1N1B4_1457 +0.6 3.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf1N1B4_3514 +0.6 5.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_2224 +0.6 1.2 FIG00953390: hypothetical protein compare
Pf1N1B4_1403 +0.6 3.3 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4768 +0.6 2.2 hypothetical protein compare
Pf1N1B4_5847 +0.6 2.0 transcriptional activator FtrA compare
Pf1N1B4_1458 +0.6 3.9 Probable transcription regulator Mig-14 compare
Pf1N1B4_3813 +0.6 2.2 Homoserine kinase (EC 2.7.1.39) compare
Pf1N1B4_5509 +0.6 1.2 hypothetical protein compare
Pf1N1B4_5803 +0.6 1.9 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
Pf1N1B4_319 +0.6 2.5 Transcriptional regulator, GntR family compare
Pf1N1B4_541 +0.6 1.8 hypothetical protein compare
Pf1N1B4_4755 +0.6 1.1 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_4359 +0.6 1.5 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_3325 +0.6 0.9 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3931 +0.6 2.9 Auxin-binding protein, putative compare
Pf1N1B4_5105 +0.6 1.3 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_2117 +0.6 4.8 Ribonuclease PH (EC 2.7.7.56) compare
Pf1N1B4_3587 +0.6 1.6 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_4741 +0.6 1.6 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf1N1B4_4823 +0.6 1.5 Paraquat-inducible protein A compare
Pf1N1B4_3787 +0.6 1.6 FIG00960829: hypothetical protein compare
Pf1N1B4_1671 +0.6 1.9 FIG00954962: hypothetical protein compare
Pf1N1B4_5527 +0.6 1.8 hypothetical protein compare
Pf1N1B4_4812 +0.6 1.5 Site-specific recombinase, phage integrase family compare
Pf1N1B4_5282 +0.6 1.5 Phage protein compare
Pf1N1B4_4280 +0.6 1.6 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_3451 +0.6 1.7 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_4255 +0.6 1.5 Putative phosphatase YfbT compare
Pf1N1B4_1334 +0.6 1.1 FIG00955840: hypothetical protein compare
Pf1N1B4_3050 +0.6 1.6 FIG00958830: hypothetical protein compare
Pf1N1B4_5242 +0.6 1.0 hypothetical protein compare
Pf1N1B4_611 +0.6 1.5 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_3591 +0.6 3.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_4874 +0.6 1.2 hypothetical protein compare
Pf1N1B4_4264 +0.6 1.6 Aminobutyraldehyde dehydrogenase (EC 1.2.1.19) compare
Pf1N1B4_5695 +0.6 1.7 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_2061 +0.6 1.5 hypothetical protein compare
Pf1N1B4_4787 +0.6 1.8 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf1N1B4_2975 +0.6 0.9 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_4136 +0.6 1.3 hypothetical protein compare
Pf1N1B4_5759 +0.6 1.5 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_1974 +0.6 0.8 L-lysine permease compare
Pf1N1B4_16 +0.6 1.5 Cys regulon transcriptional activator CysB compare
Pf1N1B4_4118 +0.6 1.1 Cyn operon transcriptional activator compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Cytidine in Pseudomonas fluorescens FW300-N1B4

For carbon source Cytidine across organisms