Experiment set4IT083 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_41.1_MOI_rep2

200 most important genes:

  gene name fitness t score description  
CSW01_13445 -5.1 -2.4 elongation factor P compare
CSW01_05265 -4.4 -1.8 methionine--tRNA ligase compare
CSW01_00450 -4.2 -2.0 SCP2 domain-containing protein compare
CSW01_13305 -4.1 -2.4 shikimate kinase compare
CSW01_11555 -4.1 -2.8 riboflavin synthase compare
CSW01_18350 -4.1 -1.9 cell division protein DedD compare
CSW01_03205 -4.1 -12.7 iron ABC transporter substrate-binding protein compare
CSW01_03215 -4.0 -14.6 ABC transporter ATP-binding protein compare
CSW01_03210 -3.9 -16.9 iron ABC transporter permease compare
CSW01_00560 -3.9 -5.9 DNA polymerase I compare
CSW01_01485 -3.9 -4.6 transcriptional regulator compare
CSW01_11730 -3.8 -2.7 2-dehydropantoate 2-reductase compare
CSW01_13285 -3.8 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_13450 -3.8 -4.5 EF-P beta-lysylation protein EpmB compare
CSW01_12365 -3.8 -2.6 inorganic phosphate transporter compare
CSW01_04820 -3.7 -12.6 serine hydroxymethyltransferase compare
CSW01_09720 -3.7 -2.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_11560 -3.5 -4.8 riboflavin biosynthesis protein RibD compare
CSW01_12005 -3.5 -2.4 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_18635 -3.3 -6.7 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_14055 -3.3 -3.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_00015 -3.2 -3.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_06380 -3.2 -2.2 GTP cyclohydrolase II compare
CSW01_03980 -3.2 -10.4 IMP dehydrogenase compare
CSW01_13805 -3.1 -6.3 Hsp33 family molecular chaperone HslO compare
CSW01_05575 -2.8 -1.9 phosphate acetyltransferase compare
CSW01_12320 -2.8 -4.9 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_05815 -2.7 -1.3 glutaredoxin compare
CSW01_18495 -2.7 -1.6 cytochrome bd-I oxidase subunit CydX compare
CSW01_09010 -2.6 -1.7 hypothetical protein compare
CSW01_02490 -2.6 -10.5 glutathione synthetase compare
CSW01_10255 -2.6 -1.9 cytochrome c-type biogenesis protein CcmH compare
CSW01_03410 -2.5 -2.9 polyribonucleotide nucleotidyltransferase compare
CSW01_10260 -2.4 -3.1 thiol:disulfide interchange protein DsbE compare
CSW01_18150 -2.4 -1.0 transcription initiation factor TFIIIB compare
CSW01_07475 -2.4 -1.4 glutaredoxin family protein compare
CSW01_18730 -2.3 -1.6 DUF406 domain-containing protein compare
CSW01_17750 -2.3 -1.1 cytochrome B compare
CSW01_11785 -2.2 -3.0 exonuclease V subunit gamma compare
CSW01_10280 -2.2 -5.5 heme exporter protein C compare
CSW01_11670 -2.1 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_07150 -2.0 -2.2 spermidine/putrescine ABC transporter permease PotC compare
CSW01_05730 -2.0 -11.9 inosine/guanosine kinase compare
CSW01_10265 -2.0 -5.6 c-type cytochrome biogenesis protein CcmF compare
CSW01_00615 -2.0 -2.0 hypothetical protein compare
CSW01_08565 -2.0 -1.2 hypothetical protein compare
CSW01_01125 -2.0 -7.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_00095 -1.9 -2.5 hypothetical protein compare
CSW01_11920 -1.8 -6.1 NupC/NupG family nucleoside CNT transporter compare
CSW01_06585 -1.8 -2.2 fumarate hydratase compare
CSW01_12885 -1.8 -6.8 fructose 1,6-bisphosphatase compare
CSW01_00870 -1.8 -2.7 cytochrome c5 family protein compare
CSW01_06325 -1.8 -1.1 hypothetical protein compare
CSW01_11225 -1.7 -6.1 flagellar basal body rod protein FlgB compare
CSW01_00500 -1.7 -10.9 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_10875 -1.7 -5.4 redox-regulated ATPase YchF compare
CSW01_12680 -1.7 -4.9 cytosol aminopeptidase compare
CSW01_03065 -1.7 -1.1 ClpXP protease specificity-enhancing factor compare
CSW01_03695 -1.7 -6.1 ribosomal large subunit pseudouridine synthase D compare
CSW01_05065 -1.7 -5.5 N-acetylglucosamine repressor compare
CSW01_13420 -1.7 -2.8 elongation factor P--(R)-beta-lysine ligase compare
CSW01_10270 -1.6 -2.8 cytochrome c-type biogenesis protein CcmE compare
CSW01_01820 -1.6 -5.5 N-acetylmuramoyl-L-alanine amidase compare
CSW01_07060 -1.6 -2.0 TetR/AcrR family transcriptional regulator compare
CSW01_13635 -1.6 -7.2 thiol:disulfide interchange protein DsbD compare
CSW01_11240 -1.6 -3.0 flagella basal body P-ring formation protein FlgA compare
CSW01_02970 -1.6 -7.3 glutamate--cysteine ligase compare
CSW01_09250 -1.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
CSW01_13810 -1.6 -5.2 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_01965 -1.6 -2.5 glucose-6-phosphate isomerase compare
CSW01_05580 -1.6 -4.1 acetate kinase compare
CSW01_08070 -1.5 -0.9 hypothetical protein compare
CSW01_17325 -1.5 -4.0 transaldolase compare
CSW01_00460 -1.5 -2.7 twin-arginine translocase subunit TatA compare
CSW01_09035 -1.5 -2.5 IclR family transcriptional regulator compare
CSW01_05490 -1.5 -4.2 L-threonylcarbamoyladenylate synthase compare
CSW01_01515 -1.5 -3.7 type II 3-dehydroquinate dehydratase compare
CSW01_17495 -1.5 -5.0 glycerol-3-phosphate dehydrogenase compare
CSW01_12665 -1.5 -3.2 RDD family protein compare
CSW01_09465 -1.5 -5.1 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_06485 -1.5 -2.6 PTS lactose/cellobiose transporter subunit IIA compare
CSW01_01490 -1.5 -3.0 Fis family transcriptional regulator compare
CSW01_03325 -1.5 -2.6 porin compare
CSW01_02875 -1.4 -3.4 DNA recombination/repair protein RecA compare
CSW01_11215 -1.4 -4.1 flagellar hook assembly protein FlgD compare
CSW01_08720 -1.4 -1.5 arginyltransferase compare
CSW01_12255 -1.4 -3.1 flavodoxin FldB compare
CSW01_02380 -1.4 -1.3 tRNA-Asn compare
CSW01_14625 -1.4 -1.5 hypothetical protein compare
CSW01_02450 -1.4 -5.8 pyrroline-5-carboxylate reductase compare
CSW01_02755 -1.4 -1.2 glutamyl-tRNA amidotransferase compare
CSW01_17060 -1.4 -4.2 DUF2861 domain-containing protein compare
CSW01_11780 -1.4 -2.6 exodeoxyribonuclease V subunit beta compare
CSW01_05165 -1.3 -1.0 electron transport complex subunit RsxC compare
CSW01_13670 -1.3 -1.2 DNA-directed RNA polymerase subunit omega compare
CSW01_15120 -1.3 -3.1 iron(III) ABC transporter permease compare
CSW01_03685 -1.3 -2.6 ribosomal subunit interface protein compare
CSW01_06810 -1.3 -0.8 hypothetical protein compare
CSW01_02455 -1.3 -4.3 YggS family pyridoxal phosphate enzyme compare
CSW01_11220 -1.3 -2.4 flagellar basal body rod protein FlgC compare
CSW01_17835 -1.3 -1.8 hypothetical protein compare
CSW01_00170 -1.2 -2.7 thiol:disulfide interchange protein DsbA compare
CSW01_00470 -1.2 -2.3 twin-arginine translocase subunit TatC compare
CSW01_12130 -1.2 -1.4 DUF721 domain-containing protein compare
CSW01_01920 -1.2 -1.5 bacterioferritin compare
CSW01_05900 -1.2 -1.4 carboxy-S-adenosyl-L-methionine synthase CmoA compare
CSW01_03045 -1.2 -1.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_15030 -1.2 -1.6 hypothetical protein compare
CSW01_12735 -1.2 -2.9 RidA family protein compare
CSW01_06005 -1.2 -1.9 vancomycin high temperature exclusion protein compare
CSW01_10375 -1.2 -2.3 HIT family protein compare
CSW01_14085 -1.2 -2.0 transcriptional regulator compare
CSW01_11195 -1.1 -1.6 flagellar L-ring protein compare
CSW01_16690 -1.1 -0.9 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_13220 -1.1 -0.8 hypothetical protein compare
CSW01_13675 -1.1 -2.5 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_12250 -1.1 -3.6 site-specific tyrosine recombinase XerD compare
CSW01_05825 -1.1 -2.1 transcriptional regulator HexR compare
CSW01_00005 -1.1 -1.0 hypothetical protein compare
CSW01_15730 -1.1 -0.7 VOC family protein compare
CSW01_15705 -1.1 -1.6 DUF3265 domain-containing protein compare
CSW01_09215 -1.1 -1.2 tol-pal system-associated acyl-CoA thioesterase compare
CSW01_08660 -1.1 -3.5 PurR family transcriptional regulator compare
CSW01_16980 -1.1 -1.3 hypothetical protein compare
CSW01_09485 -1.1 -1.4 DUF1425 domain-containing protein compare
CSW01_16130 -1.1 -0.6 acetyltransferase compare
CSW01_00675 -1.1 -0.7 hypothetical protein compare
CSW01_09245 -1.1 -2.7 Holliday junction branch migration protein RuvA compare
CSW01_01330 -1.1 -1.9 oxidoreductase compare
CSW01_01860 -1.1 -1.0 SlyX protein compare
CSW01_05215 -1.1 -2.1 molybdenum cofactor biosynthesis protein B compare
CSW01_07570 -1.1 -1.3 nucleotide-binding protein compare
CSW01_07750 -1.1 -0.6 hypothetical protein compare
CSW01_02230 -1.1 -2.8 ribonuclease E inhibitor RraB compare
CSW01_02530 -1.1 -3.3 D-erythrose-4-phosphate dehydrogenase compare
CSW01_19470 -1.1 -2.3 helix-turn-helix transcriptional regulator compare
CSW01_10340 -1.1 -2.1 MinD/ParA family protein compare
CSW01_07810 -1.1 -2.2 glycerophosphoryl diester phosphodiesterase compare
CSW01_08625 -1.0 -2.9 chromosome partition protein MukE compare
CSW01_00540 -1.0 -0.6 hypothetical protein compare
CSW01_07890 -1.0 -1.4 hypothetical protein compare
CSW01_16920 -1.0 -1.9 hypothetical protein compare
CSW01_06390 -1.0 -3.4 thiol oxidoreductase compare
CSW01_16835 -1.0 -2.8 catabolite repressor/activator compare
CSW01_05130 -1.0 -2.6 flagellar protein MotY compare
CSW01_07675 -1.0 -0.9 amino acid ABC transporter compare
CSW01_10675 -1.0 -2.1 flagellar protein FliS compare
CSW01_00080 -1.0 -1.1 hypothetical protein compare
CSW01_10195 -1.0 -1.0 hypothetical protein compare
CSW01_06395 -1.0 -3.6 iron-regulated protein A compare
CSW01_07210 -1.0 -1.6 hypothetical protein compare
CSW01_00735 -1.0 -0.8 DUF1145 domain-containing protein compare
CSW01_18160 -1.0 -2.5 hypothetical protein compare
CSW01_10630 -1.0 -1.9 flagella biosynthesis chaperone FliJ compare
CSW01_01875 -1.0 -2.2 hypothetical protein compare
CSW01_12465 -1.0 -2.9 elongation factor 4 compare
CSW01_10285 -1.0 -1.9 heme exporter protein CcmB compare
CSW01_17655 -0.9 -2.2 protein translocase subunit SecF compare
CSW01_00570 -0.9 -1.9 cytochrome c4 compare
CSW01_12920 -0.9 -1.6 DUF2607 domain-containing protein compare
CSW01_19210 -0.9 -1.0 DUF3081 domain-containing protein compare
CSW01_10590 -0.9 -1.1 flagellar biosynthetic protein FliQ compare
CSW01_10575 -0.9 -2.5 endonuclease SmrB compare
CSW01_08705 -0.9 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_19175 -0.9 -2.5 hypothetical protein compare
CSW01_03950 -0.9 -1.7 hypothetical protein compare
CSW01_10190 -0.9 -2.2 nucleoid-associated protein compare
CSW01_15205 -0.9 -3.1 HTH-type transcriptional regulator UlaR compare
CSW01_01555 -0.9 -4.5 ATP-dependent RNA helicase RhlB compare
CSW01_09000 -0.9 -2.8 transcriptional regulator compare
CSW01_06400 -0.9 -3.1 DUF1513 domain-containing protein compare
CSW01_18270 -0.9 -0.7 L-ectoine synthase compare
CSW01_17570 -0.9 -3.1 ferredoxin-type protein NapF compare
CSW01_10075 -0.9 -3.3 endolytic transglycosylase MltG compare
CSW01_18565 -0.9 -1.6 L-threonine 3-dehydrogenase compare
CSW01_11205 -0.9 -2.8 flagellar basal-body rod protein FlgF compare
CSW01_00650 -0.9 -3.4 tyrosine recombinase XerC compare
CSW01_19410 -0.9 -3.4 DUF2618 domain-containing protein compare
CSW01_18310 -0.9 -0.9 hypothetical protein compare
CSW01_04315 -0.9 -2.2 TCP pilus virulence regulatory protein compare
CSW01_07145 -0.9 -1.4 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_13300 -0.9 -2.4 3-dehydroquinate synthase compare
CSW01_11590 -0.9 -3.3 xanthine phosphoribosyltransferase compare
CSW01_08640 -0.8 -2.7 envelope biogenesis factor ElyC compare
CSW01_07770 -0.8 -2.4 MotA/TolQ/ExbB proton channel family protein compare
CSW01_10380 -0.8 -2.1 iron transporter FeoC compare
CSW01_05925 -0.8 -1.8 tryptophan synthase subunit alpha compare
CSW01_10290 -0.8 -2.4 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_10745 -0.8 -1.2 DUF2897 domain-containing protein compare
CSW01_05295 -0.8 -2.1 low molecular weight phosphotyrosine protein phosphatase compare
CSW01_16760 -0.8 -2.4 hypothetical protein compare
CSW01_04285 -0.8 -1.3 toxin coregulated pilus biosynthesis protein R compare
CSW01_11000 -0.8 -1.2 hypothetical protein compare
CSW01_15740 -0.8 -3.3 hypothetical protein compare
CSW01_07025 -0.8 -1.9 hypothetical protein compare
CSW01_18315 -0.8 -1.0 methyltransferase compare
CSW01_15910 -0.8 -2.1 hypothetical protein compare
CSW01_16730 -0.8 -1.6 glutathione S-transferase compare
CSW01_16900 -0.8 -1.1 twin-arginine translocase TatA/TatE family subunit compare
CSW01_07870 -0.8 -1.5 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms