Experiment set4IT083 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2'-Deoxyinosine 5 mM carbon source

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05621 -7.4 -5.1 glutamate synthase (NADH) small subunit compare
H281DRAFT_05801 -6.3 -4.3 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_02926 -6.0 -13.3 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_05714 -5.9 -3.8 anthranilate synthase, component II compare
H281DRAFT_06073 -5.5 -6.7 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_06067 -5.4 -14.0 tryptophan synthase, beta chain compare
H281DRAFT_01798 -5.4 -3.7 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_02214 -5.4 -19.0 homoserine O-acetyltransferase compare
H281DRAFT_04677 -5.3 -13.3 starvation-inducible DNA-binding protein compare
H281DRAFT_06072 -5.2 -8.7 3-isopropylmalate dehydrogenase compare
H281DRAFT_06059 -5.1 -11.3 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_06075 -5.1 -10.1 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_04610 -4.9 -21.4 Fe-S oxidoreductase compare
H281DRAFT_05713 -4.9 -7.1 anthranilate phosphoribosyltransferase compare
H281DRAFT_04302 -4.7 -4.4 molybdopterin adenylyltransferase compare
H281DRAFT_06264 -4.6 -5.0 glutamate 5-kinase compare
H281DRAFT_00116 -4.6 -1.8 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_05160 -4.3 -8.3 allantoicase compare
H281DRAFT_04120 -4.3 -6.7 argininosuccinate synthase compare
H281DRAFT_04119 -4.3 -5.8 ornithine carbamoyltransferase compare
H281DRAFT_00115 -4.2 -3.8 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_03925 -4.2 -8.1 chorismate mutase compare
H281DRAFT_04679 -4.2 -5.5 pyrroline-5-carboxylate reductase compare
H281DRAFT_00909 -4.2 -2.9 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_05618 -4.1 -8.9 outer membrane protein compare
H281DRAFT_03926 -4.1 -11.7 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_05715 -4.1 -19.0 anthranilate synthase, component I compare
H281DRAFT_06068 -4.0 -5.8 phosphoribosylanthranilate isomerase compare
H281DRAFT_00114 -4.0 -5.5 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_05620 -4.0 -18.2 glutamate synthase (NADH) large subunit compare
H281DRAFT_05159 -3.9 -2.8 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_06008 -3.9 -8.4 RNA polymerase, sigma 70 subunit, RpoD compare
H281DRAFT_00117 -3.9 -9.4 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_04974 -3.8 -6.8 aromatic-amino-acid transaminase compare
H281DRAFT_01117 -3.7 -5.5 acetaldehyde dehydrogenase (EC 1.2.1.3) (from data) compare
H281DRAFT_00120 -3.7 -5.5 sirohydrochlorin cobaltochelatase compare
H281DRAFT_04082 -3.6 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_05712 -3.5 -3.9 indole-3-glycerol phosphate synthase compare
H281DRAFT_05815 -3.5 -7.3 5,10-methenyltetrahydrofolate synthetase compare
H281DRAFT_02065 -3.4 -2.3 rfaE bifunctional protein, domain II compare
H281DRAFT_00395 -3.3 -9.9 hydroxymethylpyrimidine synthase compare
H281DRAFT_00860 -3.2 -1.8 phosphoserine phosphatase compare
H281DRAFT_04831 -3.2 -5.7 hypothetical protein compare
H281DRAFT_02215 -3.1 -4.0 methionine biosynthesis protein MetW compare
H281DRAFT_06027 -3.1 -14.1 AMP nucleosidase compare
H281DRAFT_00118 -3.1 -6.3 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_05158 -3.1 -4.0 putative urate catabolism protein compare
H281DRAFT_02205 -3.1 -2.2 transcriptional regulator, TraR/DksA family compare
H281DRAFT_00886 -3.0 -7.2 two component transcriptional regulator, winged helix family compare
H281DRAFT_04553 -3.0 -4.2 ketol-acid reductoisomerase compare
H281DRAFT_01116 -2.9 -3.4 deoxyribose kinase (EC 2.7.1.15) (from data) compare
H281DRAFT_00113 -2.8 -5.3 transcriptional regulator, LysR family compare
H281DRAFT_00465 -2.8 -3.5 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_00194 -2.7 -2.4 argininosuccinate lyase compare
H281DRAFT_00812 -2.7 -2.6 molybdopterin molybdotransferase compare
H281DRAFT_02000 -2.7 -5.7 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
H281DRAFT_05199 -2.7 -5.8 transcriptional regulator, TetR family compare
H281DRAFT_00848 -2.6 -2.0 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_06023 -2.5 -8.1 hypothetical protein compare
H281DRAFT_00853 -2.5 -2.7 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-CoA reductase compare
H281DRAFT_01115 -2.5 -8.1 deoxynucleoside transporter, permease component 1 (from data) compare
H281DRAFT_05086 -2.2 -2.2 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_01112 -2.2 -3.6 deoxynucleoside transporter, permease component 2 (from data) compare
H281DRAFT_00894 -2.2 -10.2 glycerate kinase compare
H281DRAFT_06238 -2.2 -1.7 hypothetical protein compare
H281DRAFT_02036 -2.1 -5.6 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_01985 -2.1 -7.8 protoheme IX farnesyltransferase compare
H281DRAFT_06039 -2.1 -3.1 molybdate transport system ATP-binding protein compare
H281DRAFT_05162 -2.0 -9.0 Uncharacterized membrane protein compare
H281DRAFT_04338 -2.0 -9.9 cyclic pyranopterin monophosphate synthase subunit MoaA compare
H281DRAFT_06277 -2.0 -3.8 hypothetical protein compare
H281DRAFT_00845 -1.9 -7.4 hypothetical protein compare
H281DRAFT_06315 -1.9 -1.7 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_06276 -1.9 -4.9 hypothetical protein compare
H281DRAFT_04388 -1.9 -1.1 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_00786 -1.9 -6.0 hydroxypyruvate isomerase compare
H281DRAFT_04710 -1.9 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_04719 -1.9 -3.5 TolB protein compare
H281DRAFT_01114 -1.8 -2.8 deoxynucleoside transporter, substrate-binding component (from data) compare
H281DRAFT_03963 -1.8 -6.6 molybdenum cofactor sulfurylase compare
H281DRAFT_00933 -1.7 -6.2 hypothetical protein compare
H281DRAFT_04071 -1.7 -9.9 quinolinate synthetase compare
H281DRAFT_04635 -1.7 -1.4 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_05087 -1.7 -3.0 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_04953 -1.7 -9.1 acetyl-coenzyme A synthetase compare
H281DRAFT_05814 -1.7 -8.1 Predicted transcription regulator, contains HTH domain, MarR family compare
H281DRAFT_00841 -1.7 -2.2 hypothetical protein compare
H281DRAFT_06483 -1.7 -2.3 succinylglutamate desuccinylase compare
H281DRAFT_06065 -1.7 -5.9 tryptophan synthase, alpha chain compare
H281DRAFT_02004 -1.6 -4.8 phosphoglycerate mutase compare
H281DRAFT_00842 -1.6 -4.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_04297 -1.6 -8.9 adenosylcobinamide-phosphate synthase compare
H281DRAFT_00755 -1.6 -4.5 transcriptional regulator, TetR family compare
H281DRAFT_00785 -1.6 -4.6 2-hydroxy-3-oxopropionate reductase compare
H281DRAFT_00746 -1.5 -4.0 ADP-ribose pyrophosphatase YjhB, NUDIX family compare
H281DRAFT_04734 -1.5 -3.7 Uncharacterized membrane protein YqjE compare
H281DRAFT_00286 -1.5 -3.2 transaldolase compare
H281DRAFT_04835 -1.5 -2.2 hypothetical protein compare
H281DRAFT_00123 -1.5 -2.1 aminopeptidase A. Metallo peptidase. MEROPS family M17 compare
H281DRAFT_02201 -1.5 -2.4 hypothetical protein compare
H281DRAFT_04191 -1.5 -4.3 Branched-chain amino acid transport protein compare
H281DRAFT_00199 -1.5 -2.3 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_05717 -1.4 -6.7 ribulose-5-phosphate 3-epimerase compare
H281DRAFT_06441 -1.4 -4.6 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
H281DRAFT_06022 -1.4 -5.3 DNA polymerase I compare
H281DRAFT_01914 -1.4 -4.7 Predicted PurR-regulated permease PerM compare
H281DRAFT_01125 -1.4 -2.4 protein of unknown function (DUF2760) compare
H281DRAFT_00787 -1.4 -6.7 tartronate-semialdehyde synthase compare
H281DRAFT_03006 -1.4 -5.4 transcriptional regulator, GntR family compare
H281DRAFT_00819 -1.3 -2.1 competence protein ComEA compare
H281DRAFT_05534 -1.3 -2.1 Zn-dependent dipeptidase, dipeptidase homolog compare
H281DRAFT_05389 -1.3 -1.6 protein of unknown function (DUF3331) compare
H281DRAFT_06105 -1.3 -4.2 transcriptional regulator, GntR family compare
H281DRAFT_03072 -1.3 -2.9 Signal transduction histidine kinase compare
H281DRAFT_03281 -1.3 -1.9 Glycosyltransferase compare
H281DRAFT_04192 -1.3 -6.8 Predicted branched-chain amino acid permease (azaleucine resistance) compare
H281DRAFT_05800 -1.3 -2.5 putative membrane protein compare
H281DRAFT_04707 -1.3 -3.9 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
H281DRAFT_01986 -1.3 -5.7 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_04021 -1.2 -3.2 3,4-dihydroxy-2-butanone 4-phosphate synthase /GTP cyclohydrolase II compare
H281DRAFT_04727 -1.2 -3.6 transcriptional repressor NrdR compare
H281DRAFT_01684 -1.2 -3.6 transcriptional regulator, TetR family compare
H281DRAFT_05165 -1.2 -3.2 transcriptional regulator, LysR family compare
H281DRAFT_00851 -1.2 -6.8 polyhydroxyalkanoate synthase compare
H281DRAFT_01993 -1.2 -7.0 cytochrome c oxidase subunit 1 compare
H281DRAFT_00788 -1.2 -7.1 transcriptional regulator, LysR family compare
H281DRAFT_06060 -1.2 -4.1 amidophosphoribosyltransferase compare
H281DRAFT_05667 -1.1 -5.2 serine protease DegQ compare
H281DRAFT_05469 -1.1 -1.9 transcriptional regulator, IclR family compare
H281DRAFT_00854 -1.1 -4.2 polyhydroxyalkanoate synthesis repressor PhaR compare
H281DRAFT_03384 -1.1 -1.5 Cytochrome c, mono- and diheme variants compare
H281DRAFT_03752 -1.1 -3.3 transcriptional regulator, IclR family compare
H281DRAFT_04694 -1.1 -5.3 heat-inducible transcription repressor HrcA compare
H281DRAFT_04549 -1.1 -3.2 Protein of unknown function (DUF3619) compare
H281DRAFT_03204 -1.1 -4.2 L-fucose mutarotase compare
H281DRAFT_00650 -1.1 -4.1 transcriptional regulator, DeoR family compare
H281DRAFT_06466 -1.1 -2.7 luciferase family oxidoreductase, group 1 compare
H281DRAFT_05085 -1.0 -1.7 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_04623 -1.0 -2.6 transcriptional regulator, TetR family compare
H281DRAFT_01358 -1.0 -2.7 Uncharacterized protein, RmlC-like cupin domain compare
H281DRAFT_04070 -1.0 -2.7 nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
H281DRAFT_03511 -1.0 -5.9 Uncharacterized conserved protein compare
H281DRAFT_00531 -1.0 -2.4 hypothetical protein compare
H281DRAFT_00488 -1.0 -2.4 exonuclease RecJ compare
H281DRAFT_01235 -1.0 -3.2 DNA-binding protein H-NS compare
H281DRAFT_01518 -1.0 -2.4 D-mannonate dehydratase (EC 4.2.1.8) compare
H281DRAFT_04879 -1.0 -3.9 putative MFS transporter, AGZA family, xanthine/uracil permease compare
H281DRAFT_04733 -1.0 -2.8 Protein of unknown function (DUF3318) compare
H281DRAFT_01149 -1.0 -1.1 two-component system, OmpR family, sensor histidine kinase QseC compare
H281DRAFT_03988 -1.0 -7.5 alanyl aminopeptidase. Metallo peptidase. MEROPS family M01 compare
H281DRAFT_04753 -1.0 -6.9 xanthine dehydrogenase, molybdenum binding subunit apoprotein compare
H281DRAFT_04202 -1.0 -3.2 type IV pilus assembly protein PilA compare
H281DRAFT_00109 -1.0 -2.8 hypothetical protein compare
H281DRAFT_00852 -1.0 -2.8 acetyl-CoA acetyltransferase compare
H281DRAFT_05520 -1.0 -5.3 transcriptional regulator, TetR family compare
H281DRAFT_05963 -1.0 -3.6 transcriptional regulator, IclR family compare
H281DRAFT_01237 -1.0 -1.2 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_04146 -1.0 -3.4 xylulokinase compare
H281DRAFT_04225 -0.9 -3.8 transcriptional regulator, DeoR family compare
H281DRAFT_00172 -0.9 -1.8 DNA-nicking endonuclease, Smr domain compare
H281DRAFT_04970 -0.9 -1.4 high-affinity iron transporter compare
H281DRAFT_02441 -0.9 -1.3 putative ABC transport system ATP-binding protein compare
H281DRAFT_02955 -0.9 -1.6 NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family compare
H281DRAFT_00220 -0.9 -4.5 Outer membrane protein (porin) compare
H281DRAFT_04585 -0.9 -2.2 hypothetical protein compare
H281DRAFT_04278 -0.9 -4.5 6-phosphogluconate dehydratase compare
H281DRAFT_02910 -0.9 -1.4 conserved hypothetical protein compare
H281DRAFT_02366 -0.9 -4.7 hypothetical protein compare
H281DRAFT_06562 -0.9 -1.6 hypothetical protein compare
H281DRAFT_02855 -0.9 -1.7 carbonic anhydrase compare
H281DRAFT_01449 -0.9 -3.1 RIO kinase 1 compare
H281DRAFT_04968 -0.9 -1.9 Hemin uptake protein hemP compare
H281DRAFT_04069 -0.9 -7.1 L-aspartate oxidase compare
H281DRAFT_02756 -0.9 -2.2 Cupin domain protein compare
H281DRAFT_00163 -0.9 -4.4 glucokinase /transcriptional regulator, RpiR family compare
H281DRAFT_00706 -0.9 -1.1 outer membrane protein compare
H281DRAFT_01889 -0.9 -2.9 7-cyano-7-deazaguanine reductase compare
H281DRAFT_03525 -0.9 -2.9 cold-shock DNA-binding protein family compare
H281DRAFT_04051 -0.9 -1.8 transcriptional regulator, RpiR family compare
H281DRAFT_05097 -0.9 -3.5 putative transposase compare
H281DRAFT_04083 -0.9 -3.1 ATP-dependent Clp protease adaptor protein ClpS compare
H281DRAFT_05876 -0.9 -3.4 transcriptional regulator, TetR family compare
H281DRAFT_01622 -0.9 -2.8 serine O-acetyltransferase compare
H281DRAFT_01052 -0.9 -1.7 hypothetical protein compare
H281DRAFT_04279 -0.9 -3.0 transcriptional regulator, RpiR family compare
H281DRAFT_03917 -0.9 -1.9 Uncharacterized integral membrane protein compare
H281DRAFT_03163 -0.9 -2.2 Protein of unknown function (DUF3348) compare
H281DRAFT_03201 -0.9 -1.5 transcriptional regulator, XRE family compare
H281DRAFT_02411 -0.9 -3.6 aminomethyltransferase compare
H281DRAFT_00544 -0.9 -3.7 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) compare
H281DRAFT_05551 -0.9 -5.3 transcriptional regulator, TetR family compare
H281DRAFT_03677 -0.9 -1.4 Uncharacterized conserved protein compare
H281DRAFT_05635 -0.9 -6.3 putative ATP-binding cassette transporter compare
H281DRAFT_04356 -0.9 -1.9 anti sigma-E protein, RseA compare
H281DRAFT_02956 -0.9 -2.2 transcriptional regulator, GntR family compare
H281DRAFT_00753 -0.9 -1.5 Protein of unknown function (DUF1488) compare
H281DRAFT_04755 -0.9 -2.5 transcriptional regulator, LysR family compare
H281DRAFT_00510 -0.9 -3.4 Beta-barrel assembly machine subunit BamC compare
H281DRAFT_00712 -0.9 -4.5 RNAse R compare
H281DRAFT_04706 -0.8 -4.1 poly(A) polymerase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 2'-Deoxyinosine in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2'-Deoxyinosine across organisms