Experiment set4IT083 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2'-Deoxyinosine 5 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04390 +2.5 17.6 ATP-binding cassette, subfamily B compare
H281DRAFT_04391 +2.3 17.0 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02683 +2.0 3.1 xanthine dehydrogenase accessory factor compare
H281DRAFT_00885 +1.7 7.2 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_04270 +1.6 10.6 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_06120 +1.5 1.9 hypothetical protein compare
H281DRAFT_04880 +1.5 2.4 PRC-barrel domain-containing protein compare
H281DRAFT_03440 +1.4 2.2 PAP2 superfamily protein compare
H281DRAFT_00379 +1.4 2.1 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_01184 +1.3 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_00298 +1.2 3.1 hypothetical protein compare
H281DRAFT_02148 +1.2 3.0 cytochrome c compare
H281DRAFT_04269 +1.2 6.7 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_00487 +1.2 2.5 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_01111 +1.2 2.1 transcriptional regulator, DeoR family compare
H281DRAFT_05778 +1.2 2.4 flagellar motor switch protein FliN/FliY compare
H281DRAFT_04219 +1.2 6.0 Cytochrome c553 compare
H281DRAFT_04268 +1.1 7.4 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_02508 +1.1 1.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00255 +1.1 3.3 hypothetical protein compare
H281DRAFT_01748 +1.1 4.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_04220 +1.1 5.8 Cytochrome c, mono- and diheme variants compare
H281DRAFT_02651 +1.1 1.8 transcriptional regulator, MerR family compare
H281DRAFT_04544 +1.0 2.3 diacylglycerol kinase (ATP) compare
H281DRAFT_04857 +1.0 1.9 hypothetical protein compare
H281DRAFT_02741 +1.0 2.2 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_06069 +1.0 3.7 tRNA pseudouridine38-40 synthase compare
H281DRAFT_03460 +1.0 1.3 Protein of unknown function (DUF2950) compare
H281DRAFT_04201 +1.0 1.5 O-antigen ligase compare
H281DRAFT_05816 +1.0 7.5 soluble lytic murein transglycosylase compare
H281DRAFT_00888 +1.0 2.6 phytoene synthase compare
H281DRAFT_04400 +1.0 7.1 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_00470 +0.9 5.5 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_03159 +0.9 1.4 hypothetical protein compare
H281DRAFT_03061 +0.9 3.2 hypothetical protein compare
H281DRAFT_03502 +0.9 2.0 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_05762 +0.9 1.8 flagellar basal-body rod protein FlgB compare
H281DRAFT_02007 +0.9 7.0 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_01584 +0.9 1.5 enamidase compare
H281DRAFT_04759 +0.9 1.1 hypothetical protein compare
H281DRAFT_01024 +0.9 1.5 hypothetical protein compare
H281DRAFT_01262 +0.9 1.9 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04924 +0.9 4.2 iron complex outermembrane recepter protein compare
H281DRAFT_05724 +0.9 4.4 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_03226 +0.9 1.3 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_03611 +0.9 2.7 hopanoid-associated phosphorylase compare
H281DRAFT_05273 +0.9 1.9 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_05977 +0.9 1.9 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_00927 +0.9 4.2 UPF0755 protein compare
H281DRAFT_04229 +0.9 5.9 glycerol kinase compare
H281DRAFT_04931 +0.8 1.3 Surfactin synthase thioesterase subunit compare
H281DRAFT_00972 +0.8 1.4 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_05753 +0.8 5.9 flagellar biosynthesis protein FlhA compare
H281DRAFT_05755 +0.8 2.6 flagellar biosynthesis protein FlhG compare
H281DRAFT_01838 +0.8 1.8 regulator RcnB of Ni and Co efflux compare
H281DRAFT_02736 +0.8 2.3 uncharacterized peroxidase-related enzyme compare
H281DRAFT_05763 +0.8 5.5 flagellar basal-body rod protein FlgC compare
H281DRAFT_03411 +0.8 1.8 hypothetical protein compare
H281DRAFT_02791 +0.8 1.3 apolipoprotein D and lipocalin family protein compare
H281DRAFT_01436 +0.8 1.2 NTE family protein compare
H281DRAFT_04228 +0.8 4.9 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_05901 +0.8 1.5 Cupin domain-containing protein compare
H281DRAFT_06253 +0.8 4.0 cell division protein ZapD compare
H281DRAFT_02149 +0.8 4.4 Osmotically-inducible protein OsmY, contains BON domain compare
H281DRAFT_00504 +0.8 3.1 hypothetical protein compare
H281DRAFT_05770 +0.8 4.1 flagellar protein FlgJ compare
H281DRAFT_02224 +0.8 1.1 rod shape-determining protein MreC compare
H281DRAFT_05123 +0.8 1.9 hypothetical protein compare
H281DRAFT_01033 +0.8 1.2 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05122 +0.8 2.8 host factor-I protein compare
H281DRAFT_02351 +0.8 4.2 general secretion pathway protein H compare
H281DRAFT_06576 +0.8 1.6 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_06011 +0.7 1.4 SSU ribosomal protein S21P compare
H281DRAFT_06320 +0.7 2.3 biopolymer transport protein ExbD compare
H281DRAFT_03409 +0.7 1.2 Protein of unknown function (DUF3072) compare
H281DRAFT_03227 +0.7 1.4 transcriptional regulator, LacI family compare
H281DRAFT_03036 +0.7 1.9 hypothetical protein compare
H281DRAFT_06578 +0.7 2.8 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_03199 +0.7 3.7 flagellar transcriptional activator FlhD compare
H281DRAFT_06488 +0.7 2.2 EAL and modified HD-GYP domain-containing signal transduction protein compare
H281DRAFT_01457 +0.7 1.8 hypothetical protein compare
H281DRAFT_01261 +0.7 2.7 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_02355 +0.7 5.0 type II secretion system protein E (GspE) compare
H281DRAFT_04993 +0.7 1.6 hypothetical protein compare
H281DRAFT_04607 +0.7 1.3 hypothetical protein compare
H281DRAFT_05809 +0.7 3.8 Uncharacterized membrane protein compare
H281DRAFT_00757 +0.7 1.0 hypothetical protein compare
H281DRAFT_01001 +0.7 1.8 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_04923 +0.7 3.2 iron complex transport system substrate-binding protein compare
H281DRAFT_04611 +0.7 1.9 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_02245 +0.7 4.9 transcriptional regulator, LysR family compare
H281DRAFT_00794 +0.7 2.0 hypothetical protein compare
H281DRAFT_02232 +0.7 4.7 preQ(0) biosynthesis protein QueC compare
H281DRAFT_05342 +0.7 2.0 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_01812 +0.7 1.4 Short-chain dehydrogenase compare
H281DRAFT_00895 +0.7 2.6 trigger factor compare
H281DRAFT_06308 +0.7 1.9 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
H281DRAFT_03066 +0.7 2.0 transcriptional regulator, LysR family compare
H281DRAFT_04713 +0.7 3.7 membrane-associated protein compare
H281DRAFT_05350 +0.7 2.5 Signal transduction histidine kinase compare
H281DRAFT_05294 +0.7 1.6 histidine ammonia-lyase compare
H281DRAFT_04990 +0.7 1.9 type III secretion translocon protein HrpF compare
H281DRAFT_03023 +0.7 0.9 Protein of unknown function (DUF2866) compare
H281DRAFT_00678 +0.7 2.7 hypothetical protein compare
H281DRAFT_04007 +0.7 3.0 TIGR00255 family protein compare
H281DRAFT_02003 +0.7 2.6 Rhodanese-related sulfurtransferase compare
H281DRAFT_02693 +0.7 1.7 transcriptional regulator, DeoR family compare
H281DRAFT_01102 +0.7 1.9 hypothetical protein compare
H281DRAFT_00996 +0.7 1.5 ChrR Cupin-like domain-containing protein compare
H281DRAFT_02349 +0.7 2.9 general secretion pathway protein J compare
H281DRAFT_03796 +0.7 2.1 protein of unknown function (DUF4148) compare
H281DRAFT_00870 +0.6 1.6 putative ABC transport system ATP-binding protein compare
H281DRAFT_06567 +0.6 1.0 hypothetical protein compare
H281DRAFT_04773 +0.6 1.6 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_05756 +0.6 2.0 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_01766 +0.6 1.9 cytochrome c oxidase subunit 2 compare
H281DRAFT_03299 +0.6 0.8 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein compare
H281DRAFT_05483 +0.6 1.1 protein of unknown function (DUF1840) compare
H281DRAFT_05289 +0.6 0.9 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_02700 +0.6 1.3 feruloyl esterase compare
H281DRAFT_03157 +0.6 2.1 transcriptional regulator, LysR family compare
H281DRAFT_03403 +0.6 2.8 Predicted ATPase compare
H281DRAFT_06010 +0.6 2.5 hypothetical protein compare
H281DRAFT_03131 +0.6 3.6 proton-dependent oligopeptide transporter, POT family compare
H281DRAFT_05764 +0.6 2.5 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_06041 +0.6 3.0 Tautomerase enzyme compare
H281DRAFT_06577 +0.6 3.7 hypothetical protein compare
H281DRAFT_04958 +0.6 1.5 glutamate racemase compare
H281DRAFT_02685 +0.6 2.2 Uncharacterized damage-inducible protein DinB (forms a four-helix bundle) compare
H281DRAFT_02815 +0.6 2.8 xanthine dehydrogenase YagS FAD-binding subunit compare
H281DRAFT_02952 +0.6 1.3 fructuronate reductase compare
H281DRAFT_04536 +0.6 2.0 protein of unknown function (DUF4126) compare
H281DRAFT_04900 +0.6 2.0 microcin C transport system permease protein compare
H281DRAFT_05406 +0.6 1.6 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04424 +0.6 2.4 hypothetical protein compare
H281DRAFT_01224 +0.6 1.2 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_05192 +0.6 1.4 phage shock protein A (PspA) family protein compare
H281DRAFT_01880 +0.6 1.1 two component transcriptional regulator, LuxR family compare
H281DRAFT_01825 +0.6 1.7 Outer membrane protein (porin) compare
H281DRAFT_02753 +0.6 1.4 Predicted dehydrogenase compare
H281DRAFT_06220 +0.6 1.4 hypothetical protein compare
H281DRAFT_04939 +0.6 1.9 transcriptional regulator, TetR family compare
H281DRAFT_03312 +0.6 3.5 PAS domain S-box-containing protein compare
H281DRAFT_06085 +0.6 0.9 transcriptional regulator, AraC family compare
H281DRAFT_00944 +0.6 3.7 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase compare
H281DRAFT_05510 +0.6 3.2 Transposase compare
H281DRAFT_05322 +0.6 2.2 gluconolactonase (EC 3.1.1.17) compare
H281DRAFT_02922 +0.6 0.9 transcriptional regulator, AraC family compare
H281DRAFT_04878 +0.6 1.6 transcriptional regulator, ArsR family compare
H281DRAFT_05813 +0.6 2.7 sensor histidine kinase inhibitor, KipI family compare
H281DRAFT_02818 +0.6 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02931 +0.6 2.9 Uncharacterized conserved protein YodC, DUF2158 family compare
H281DRAFT_03256 +0.6 1.5 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare
H281DRAFT_05619 +0.6 3.5 putative transposase compare
H281DRAFT_02662 +0.6 1.3 Predicted xylanase/chitin deacetylase compare
H281DRAFT_02354 +0.6 3.9 general secretion pathway protein F compare
H281DRAFT_05351 +0.6 1.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_02054 +0.6 3.4 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_01988 +0.6 3.7 Cytochrome oxidase assembly protein ShyY1 compare
H281DRAFT_02346 +0.6 1.6 general secretion pathway protein M compare
H281DRAFT_05810 +0.6 2.6 Uncharacterized membrane protein compare
H281DRAFT_01390 +0.6 0.9 hypothetical protein compare
H281DRAFT_04877 +0.6 1.9 Predicted dithiol-disulfide oxidoreductase, DUF899 family compare
H281DRAFT_04922 +0.6 1.4 iron complex transport system permease protein compare
H281DRAFT_04863 +0.6 1.1 hypothetical protein compare
H281DRAFT_02998 +0.6 3.0 transcriptional regulator, LuxR family compare
H281DRAFT_05769 +0.6 3.8 flagellar P-ring protein precursor FlgI compare
H281DRAFT_04594 +0.6 1.7 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_04947 +0.6 1.7 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_01675 +0.6 2.6 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_05210 +0.6 0.8 Sugar phosphate isomerase/epimerase compare
H281DRAFT_01091 +0.6 2.0 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_02350 +0.6 2.9 general secretion pathway protein I compare
H281DRAFT_06385 +0.6 1.0 hypothetical protein compare
H281DRAFT_05968 +0.6 2.3 40-residue YVTN family beta-propeller repeat-containing protein compare
H281DRAFT_06502 +0.6 1.1 transcriptional regulator, LysR family compare
H281DRAFT_00317 +0.6 2.6 O-antigen ligase compare
H281DRAFT_01394 +0.6 2.2 RND family efflux transporter, MFP subunit compare
H281DRAFT_00896 +0.6 1.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_06164 +0.6 1.8 protein of unknown function (DUF4400) compare
H281DRAFT_00223 +0.6 3.0 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_05765 +0.6 4.0 flagellar hook protein FlgE compare
H281DRAFT_06266 +0.6 2.3 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_04386 +0.6 1.5 hypothetical protein compare
H281DRAFT_00235 +0.6 1.2 hypothetical protein compare
H281DRAFT_05465 +0.6 2.0 hypothetical protein compare
H281DRAFT_06177 +0.5 3.3 hypothetical protein compare
H281DRAFT_05225 +0.5 1.0 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00254 +0.5 3.2 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_03728 +0.5 1.2 Uncharacterized conserved protein, DUF1697 family compare
H281DRAFT_06268 +0.5 2.0 Small neutral amino acid transporter SnatA, MarC family compare
H281DRAFT_01885 +0.5 1.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_05752 +0.5 2.6 flagellar biosynthetic protein FlhB compare
H281DRAFT_04781 +0.5 0.8 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_03116 +0.5 1.8 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_01019 +0.5 1.3 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03094 +0.5 0.8 transcriptional regulator, MarR family compare
H281DRAFT_02701 +0.5 1.0 dihydroxyacetone kinase, C-terminal domain compare
H281DRAFT_03610 +0.5 2.4 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_02985 +0.5 1.1 copper chaperone compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 2'-Deoxyinosine in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2'-Deoxyinosine across organisms