Experiment set4IT082 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Gentamicin sulfate salt 0.006 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_05625 -3.7 -2.5 transcription elongation factor GreA compare
AO353_07315 -3.7 -2.5 rRNA methyltransferase compare
AO353_26835 -3.6 -2.4 transcriptional regulator compare
AO353_26845 -3.5 -9.6 acriflavine resistance protein B compare
AO353_22685 -3.4 -4.6 peroxidase compare
AO353_12090 -3.4 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_11850 -3.3 -4.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_04190 -3.1 -2.1 glycerol-3-phosphate dehydrogenase compare
AO353_20200 -3.0 -4.0 peptidylprolyl isomerase compare
AO353_17290 -3.0 -6.5 multidrug transporter compare
AO353_08170 -2.9 -4.8 hypothetical protein compare
AO353_11750 -2.8 -1.9 ATPase compare
AO353_26840 -2.8 -3.6 RND transporter compare
AO353_03590 -2.6 -4.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_12500 -2.5 -2.4 shikimate kinase compare
AO353_00825 -2.5 -4.6 porin compare
AO353_27695 -2.4 -8.0 isocitrate dehydrogenase compare
AO353_09315 -2.3 -10.3 LysR family transcriptional regulator compare
AO353_10065 -2.3 -7.5 hypothetical protein compare
AO353_20170 -2.3 -5.4 trigger factor compare
AO353_00510 -2.2 -5.4 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_15900 -2.2 -2.5 GTP-binding protein compare
AO353_03580 -2.2 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_13160 -2.2 -2.1 membrane protease HflC compare
AO353_08100 -2.2 -4.2 chemotaxis protein CheY compare
AO353_02250 -2.2 -2.8 chorismate synthase compare
AO353_12115 -2.2 -2.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_09915 -2.2 -6.6 long-chain acyl-CoA thioester hydrolase compare
AO353_06415 -2.1 -4.6 hypothetical protein compare
AO353_02070 -2.1 -7.6 prephenate dehydratase compare
AO353_25505 -2.1 -9.5 4-amino-4-deoxy-L-arabinose transferase compare
AO353_10930 -2.1 -7.2 DNA polymerase I compare
AO353_22655 -2.1 -7.2 hypothetical protein conserved
AO353_11730 -2.0 -8.5 glutamate--cysteine ligase compare
AO353_06585 -2.0 -6.6 hypothetical protein compare
AO353_00430 -1.9 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_06040 -1.9 -3.7 exodeoxyribonuclease V subunit alpha compare
AO353_10710 -1.9 -5.0 tryptophan synthase subunit beta compare
AO353_13225 -1.9 -3.5 50S ribosomal protein L9 compare
AO353_04035 -1.9 -3.4 exclusion suppressor FxsA compare
AO353_09275 -1.8 -2.9 DNA-directed RNA polymerase subunit omega compare
AO353_21425 -1.8 -4.1 hypothetical protein compare
AO353_07075 -1.8 -5.2 elongation factor Tu compare
AO353_13155 -1.8 -3.7 hypothetical protein compare
AO353_03595 -1.8 -4.2 hypothetical protein compare
AO353_09560 -1.8 -2.3 type VI secretion protein compare
AO353_09040 -1.7 -2.5 diaminopimelate epimerase compare
AO353_00515 -1.7 -3.1 hypothetical protein compare
AO353_20185 -1.7 -5.6 DNA-binding protein compare
AO353_03710 -1.7 -2.2 formyltetrahydrofolate deformylase compare
AO353_27650 -1.6 -4.0 cell division protein FtsK compare
AO353_03420 -1.6 -4.2 phosphogluconate dehydratase compare
AO353_25550 -1.6 -5.5 4-amino-4-deoxy-L-arabinose transferase compare
AO353_03360 -1.6 -6.7 glucose-6-phosphate dehydrogenase compare
AO353_12145 -1.6 -4.0 nitrogen regulation protein NR(I) compare
AO353_28110 -1.6 -4.3 TetR family transcriptional regulator compare
AO353_07355 -1.6 -4.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_15260 -1.5 -5.2 stringent starvation protein A compare
AO353_15290 -1.5 -6.8 methyltransferase compare
AO353_07155 -1.5 -5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_03775 -1.5 -7.0 pyruvate kinase compare
AO353_12460 -1.5 -6.5 malate dehydrogenase compare
AO353_06495 -1.4 -4.3 gamma-glutamyl phosphate reductase compare
AO353_09000 -1.4 -4.3 argininosuccinate lyase compare
AO353_08350 -1.4 -6.0 hypothetical protein compare
AO353_09240 -1.4 -2.7 acetylglutamate kinase compare
AO353_08110 -1.4 -4.7 glutathione synthetase compare
AO353_08970 -1.4 -6.2 disulfide bond formation protein B conserved
AO353_20510 -1.4 -1.8 amidase compare
AO353_13100 -1.4 -2.0 GTPase RsgA compare
AO353_09890 -1.4 -3.9 phosphate ABC transporter ATP-binding protein compare
AO353_05690 -1.4 -3.2 SsrA-binding protein compare
AO353_16495 -1.3 -5.1 zinc metallopeptidase RseP compare
AO353_22305 -1.3 -2.4 LysR family transcriptional regulator compare
AO353_10055 -1.3 -8.2 DNA helicase II compare
AO353_02995 -1.3 -6.0 succinylglutamate desuccinylase compare
AO353_00505 -1.3 -3.3 3-ketoacyl-CoA thiolase compare
AO353_00105 -1.3 -1.9 hypothetical protein compare
AO353_02685 -1.3 -3.1 phosphoribosylglycinamide formyltransferase compare
AO353_05130 -1.3 -1.6 anti-anti-sigma factor compare
AO353_06050 -1.3 -5.0 exodeoxyribonuclease V subunit gamma compare
AO353_02765 -1.3 -3.1 NAD(P)H-quinone oxidoreductase compare
AO353_05420 -1.3 -1.9 peptide chain release factor 3 compare
AO353_05840 -1.3 -8.6 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_09320 -1.3 -6.7 ATP-dependent DNA helicase RecG compare
AO353_04325 -1.3 -1.9 hypothetical protein compare
AO353_13685 -1.2 -3.7 3-dehydroquinate dehydratase compare
AO353_12110 -1.2 -6.3 peptidase M23 compare
AO353_12075 -1.2 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08980 -1.2 -2.6 heme biosynthesis operon protein HemX compare
AO353_22735 -1.2 -2.5 hypothetical protein compare
AO353_25990 -1.2 -4.7 aspartyl beta-hydroxylase compare
AO353_21430 -1.2 -2.9 hypothetical protein compare
AO353_23615 -1.2 -4.5 peptidase S54 compare
AO353_12150 -1.2 -4.3 histidine kinase compare
AO353_16805 -1.2 -4.1 recombinase RecA compare
AO353_14485 -1.1 -1.8 pseudouridine synthase compare
AO353_06045 -1.1 -4.9 exodeoxyribonuclease V subunit beta compare
AO353_09905 -1.1 -6.0 phosphate-binding protein compare
AO353_10430 -1.1 -2.9 chromosome partitioning protein ParB compare
AO353_02945 -1.1 -5.6 magnesium transporter compare
AO353_09250 -1.1 -2.4 exodeoxyribonuclease III compare
AO353_16940 -1.1 -4.2 deoxycytidine triphosphate deaminase compare
AO353_04355 -1.1 -1.8 homoserine dehydrogenase compare
AO353_20565 -1.1 -1.7 tRNA-Ala compare
AO353_03715 -1.1 -1.6 H-NS histone compare
AO353_02710 -1.1 -6.9 (p)ppGpp synthetase compare
AO353_04365 -1.1 -3.8 recombinase XerD compare
AO353_18480 -1.1 -7.8 potassium transporter TrkH compare
AO353_13640 -1.1 -2.9 histidine kinase compare
AO353_10630 -1.1 -4.0 16S rRNA methyltransferase compare
AO353_12880 -1.1 -1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_13720 -1.1 -7.8 arginine decarboxylase compare
AO353_08685 -1.1 -5.0 N-acetylglutamate synthase compare
AO353_08085 -1.0 -7.2 histidine kinase compare
AO353_23220 -1.0 -1.5 hypothetical protein compare
AO353_10625 -1.0 -7.5 potassium transporter peripheral membrane component compare
AO353_10705 -1.0 -3.1 tryptophan synthase subunit alpha compare
AO353_27155 -1.0 -2.1 hypothetical protein compare
AO353_06320 -1.0 -3.2 AsnC family transcriptional regulator compare
AO353_09950 -1.0 -3.4 aspartate ammonia-lyase compare
AO353_08880 -1.0 -1.8 exopolyphosphatase compare
AO353_19090 -1.0 -1.6 MarR family transcriptional regulator compare
AO353_23405 -1.0 -1.9 hypothetical protein compare
AO353_15785 -1.0 -4.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_22800 -1.0 -2.0 sulfite reductase compare
AO353_14590 -1.0 -1.0 serine kinase/phosphatase compare
AO353_18555 -1.0 -6.9 aromatic amino acid transporter compare
AO353_04500 -1.0 -2.0 DNA repair protein RecO compare
AO353_10670 -1.0 -4.1 shikimate dehydrogenase compare
AO353_17855 -0.9 -2.0 ribonuclease D compare
AO353_08080 -0.9 -4.1 chemotaxis protein compare
AO353_24120 -0.9 -1.7 hypothetical protein compare
AO353_21595 -0.9 -4.0 serine/threonine protein kinase compare
AO353_07940 -0.9 -2.8 hypothetical protein compare
AO353_12650 -0.9 -1.2 hypothetical protein compare
AO353_20685 -0.9 -3.5 colicin V production CvpA compare
AO353_04175 -0.9 -3.1 glycerol uptake facilitator GlpF compare
AO353_17300 -0.9 -3.5 antibiotic transporter compare
AO353_08095 -0.9 -4.2 protein PilI compare
AO353_00760 -0.9 -2.0 hypothetical protein compare
AO353_26520 -0.9 -2.1 TetR family transcriptional regulator compare
AO353_23720 -0.9 -2.5 BatB protein compare
AO353_00355 -0.9 -1.4 transcriptional regulator compare
AO353_00185 -0.9 -1.0 phage tail protein compare
AO353_17295 -0.9 -6.4 multidrug transporter compare
AO353_18170 -0.9 -4.1 aspartyl beta-hydroxylase compare
AO353_11770 -0.9 -1.3 molecular chaperone Hsp33 compare
AO353_20505 -0.9 -2.9 cytidyltransferase compare
AO353_14975 -0.9 -3.1 hypothetical protein compare
AO353_06865 -0.9 -6.6 catalase compare
AO353_04360 -0.9 -3.3 protein-disulfide isomerase compare
AO353_04490 -0.9 -5.0 murein transglycosylase compare
AO353_03290 -0.9 -1.5 peptide deformylase compare
AO353_11915 -0.8 -4.3 agmatine deiminase compare
AO353_17165 -0.8 -1.9 ATP-dependent helicase compare
AO353_04565 -0.8 -3.3 nucleoid-associated protein compare
AO353_12055 -0.8 -3.5 cell envelope biogenesis protein AsmA compare
AO353_03545 -0.8 -4.6 hypothetical protein compare
AO353_02970 -0.8 -2.3 carbon storage regulator compare
AO353_18630 -0.8 -4.7 beta-ketoacyl-ACP synthase compare
AO353_08115 -0.8 -3.7 energy transducer TonB compare
AO353_14505 -0.8 -5.6 ketol-acid reductoisomerase compare
AO353_25955 -0.8 -1.7 NIPSNAP family containing protein compare
AO353_04445 -0.8 -2.6 GntR family transcriptional regulator compare
AO353_29145 -0.8 -2.7 HxlR family transcriptional regulator compare
AO353_25570 -0.8 -4.7 glycosyltransferase compare
AO353_09050 -0.8 -2.4 recombinase XerC compare
AO353_17880 -0.8 -2.7 hypothetical protein compare
AO353_28890 -0.8 -2.6 hypothetical protein compare
AO353_03615 -0.8 -1.9 cold-shock protein compare
AO353_15905 -0.8 -3.6 outer membrane protein assembly factor BamB compare
AO353_15285 -0.8 -5.2 hypothetical protein compare
AO353_17675 -0.8 -3.1 hypothetical protein compare
AO353_19060 -0.8 -2.9 CysB family transcriptional regulator compare
AO353_07495 -0.8 -6.1 acyl-CoA dehydrogenase compare
AO353_23735 -0.8 -4.0 AAA family ATPase compare
AO353_21330 -0.8 -4.4 RpiR family transcriptional regulator compare
AO353_00310 -0.8 -4.5 transaldolase compare
AO353_19790 -0.8 -4.8 sodium:proton antiporter compare
AO353_17540 -0.8 -1.9 helicase compare
AO353_12540 -0.8 -1.9 hypothetical protein compare
AO353_03825 -0.8 -2.7 hypothetical protein compare
AO353_12085 -0.8 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_08345 -0.8 -4.1 dihydroxy-acid dehydratase compare
AO353_22415 -0.8 -2.4 alcohol dehydrogenase compare
AO353_20030 -0.8 -3.6 DNA polymerase III compare
AO353_02075 -0.8 -4.8 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00900 -0.8 -4.1 2-methylisocitrate lyase compare
AO353_03585 -0.8 -1.7 ATP-dependent DNA helicase RuvA compare
AO353_00210 -0.8 -3.9 terminase compare
AO353_24535 -0.8 -1.2 hypothetical protein compare
AO353_07935 -0.7 -2.2 hypothetical protein compare
AO353_08240 -0.7 -5.6 cell division protein FtsX compare
AO353_11165 -0.7 -4.6 hypothetical protein compare
AO353_09260 -0.7 -3.5 ribonuclease PH compare
AO353_16740 -0.7 -2.0 phage tail protein compare
AO353_11740 -0.7 -4.7 DNA damage response protein (yhgF like) (from data) compare
AO353_18560 -0.7 -1.4 class I peptide chain release factor compare
AO353_00345 -0.7 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Gentamicin sulfate salt in Pseudomonas fluorescens FW300-N2E3

For stress Gentamicin sulfate salt across organisms