Experiment set4IT082 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Gentamicin sulfate salt 0.006 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO353_19145 +5.0 12.8 protease HtpX compare
AO353_26830 +4.3 18.0 histidine kinase compare
AO353_08465 +3.4 29.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_12945 +3.1 17.4 toluene tolerance protein compare
AO353_27720 +2.9 9.3 cupin compare
AO353_10455 +1.9 3.4 tRNA modification GTPase MnmE compare
AO353_15450 +1.9 15.0 ubiquinol oxidase subunit II compare
AO353_00455 +1.8 3.9 beta-hexosaminidase compare
AO353_00610 +1.8 3.7 cytochrome C oxidase Cbb3 compare
AO353_00620 +1.7 4.8 cytochrome C oxidase Cbb3 compare
AO353_10780 +1.7 3.0 DNA-binding protein compare
AO353_01405 +1.7 9.3 23S rRNA pseudouridylate synthase compare
AO353_15470 +1.7 13.6 protoheme IX farnesyltransferase compare
AO353_15455 +1.6 14.0 cytochrome o ubiquinol oxidase subunit I compare
AO353_12940 +1.6 10.5 glycosyl transferase compare
AO353_15460 +1.5 9.1 cytochrome o ubiquinol oxidase subunit III compare
AO353_12950 +1.5 10.1 polymerase compare
AO353_20865 +1.5 3.6 cold-shock protein compare
AO353_15465 +1.5 8.1 cytochrome C oxidase compare
AO353_11775 +1.5 10.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_08470 +1.5 5.0 RNA pyrophosphohydrolase compare
AO353_27735 +1.4 8.3 isocitrate lyase compare
AO353_02025 +1.4 10.5 mannose-1-phosphate guanyltransferase compare
AO353_21630 +1.4 4.1 precorrin-4 C11-methyltransferase compare
AO353_21830 +1.3 10.8 chemotaxis protein CheY compare
AO353_14220 +1.3 1.5 ribosomal large subunit pseudouridine synthase D compare
AO353_00605 +1.3 7.2 cytochrome C oxidase Cbb3 compare
AO353_18540 +1.3 2.7 pseudouridine synthase compare
AO353_10445 +1.3 3.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_01980 +1.2 9.3 NAD-dependent dehydratase compare
AO353_04520 +1.2 4.0 elongation factor 4 compare
AO353_08895 +1.2 5.2 hypothetical protein compare
AO353_01990 +1.2 6.8 UDP-N-acetylglucosamine 2-epimerase compare
AO353_02735 +1.2 10.2 chemotaxis protein CheY compare
AO353_00490 +1.1 2.5 PasA protein compare
AO353_08195 +1.1 5.7 non-canonical purine NTP pyrophosphatase compare
AO353_01985 +1.1 8.3 hypothetical protein compare
AO353_00915 +1.1 8.0 hypothetical protein conserved
AO353_00920 +1.1 5.4 alpha-L-glutamate ligase compare
AO353_12020 +1.1 3.8 hypothetical protein compare
AO353_06670 +1.1 4.2 MFS transporter compare
AO353_19825 +1.1 6.3 shikimate dehydrogenase compare
AO353_06795 +1.1 2.5 Isochorismatase compare
AO353_00650 +1.1 2.7 cytochrome biogenesis protein compare
AO353_12580 +1.0 2.5 type II secretory protein PulK compare
AO353_02015 +1.0 5.6 acetyltransferase compare
AO353_01995 +1.0 8.5 hypothetical protein compare
AO353_14995 +1.0 5.5 16S rRNA methyltransferase compare
AO353_09235 +1.0 6.3 phosphoglucomutase compare
AO353_07145 +1.0 7.0 anhydro-N-acetylmuramic acid kinase compare
AO353_01975 +1.0 6.5 glycosyl transferase compare
AO353_14940 +1.0 3.8 malate:quinone oxidoreductase compare
AO353_00435 +1.0 8.3 transcription-repair coupling factor compare
AO353_06265 +1.0 6.5 DEAD/DEAH box helicase compare
AO353_23385 +1.0 5.2 trans-2-enoyl-CoA reductase compare
AO353_23590 +1.0 2.0 ArsR family transcriptional regulator compare
AO353_04845 +1.0 7.3 LysR family transcriptional regulator compare
AO353_00120 +0.9 2.6 DNA-binding protein compare
AO353_21665 +0.9 4.1 magnesium chelatase compare
AO353_12420 +0.9 3.5 predicted FeS cluster maintenance protein (from data) compare
AO353_16925 +0.9 7.8 AmpG family muropeptide MFS transporter compare
AO353_02040 +0.9 2.0 integration host factor subunit beta compare
AO353_14740 +0.9 2.3 GTP-binding protein compare
AO353_18335 +0.9 1.9 hypothetical protein compare
AO353_26945 +0.9 1.8 transcriptional regulator compare
AO353_02020 +0.9 4.2 hypothetical protein compare
AO353_06480 +0.9 3.2 50S rRNA methyltransferase compare
AO353_27730 +0.9 5.8 secretin compare
AO353_00975 +0.9 2.7 hypothetical protein compare
AO353_13570 +0.9 6.6 TonB-dependent receptor compare
AO353_08200 +0.9 6.1 coproporphyrinogen III oxidase compare
AO353_26115 +0.9 1.7 hypothetical protein compare
AO353_24605 +0.9 2.3 hypothetical protein compare
AO353_12345 +0.9 2.1 twin-arginine protein translocation system subunit TatC compare
AO353_14150 +0.9 1.7 peptidylprolyl isomerase compare
AO353_09135 +0.9 2.4 cytochrome C compare
AO353_16345 +0.8 1.9 energy transducer TonB compare
AO353_08050 +0.8 4.2 16S rRNA methyltransferase compare
AO353_01970 +0.8 5.9 hypothetical protein compare
AO353_04015 +0.8 4.8 histidine kinase compare
AO353_02030 +0.8 2.8 hypothetical protein compare
AO353_06710 +0.8 1.2 riboflavin synthase subunit alpha compare
AO353_10060 +0.8 3.7 transporter compare
AO353_00030 +0.8 3.8 glutathione S-transferase compare
AO353_04075 +0.8 4.1 electron transporter RnfG compare
AO353_15170 +0.8 2.3 cytochrome D ubiquinol oxidase subunit III compare
AO353_09660 +0.8 1.8 hypothetical protein compare
AO353_22780 +0.8 3.5 phosphoglycerate mutase compare
AO353_05340 +0.8 3.3 histidine kinase compare
AO353_14395 +0.8 2.8 poly(A) polymerase compare
AO353_23400 +0.8 1.6 hypothetical protein compare
AO353_02330 +0.8 2.3 allantoicase compare
AO353_04185 +0.8 3.8 DeoR family transcriptional regulator compare
AO353_05510 +0.8 4.3 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_02600 +0.8 2.1 alpha-ribazole phosphatase compare
AO353_06725 +0.8 1.7 hypothetical protein compare
AO353_04930 +0.8 2.1 flavodoxin compare
AO353_01780 +0.7 5.5 heat-shock protein Hsp90 compare
AO353_02000 +0.7 2.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_25665 +0.7 3.3 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
AO353_00910 +0.7 4.5 ATP-dependent zinc protease compare
AO353_10035 +0.7 4.1 LysR family transcriptional regulator compare
AO353_15445 +0.7 2.7 disulfide bond formation protein B compare
AO353_01035 +0.7 2.4 hypothetical protein compare
AO353_04065 +0.7 2.3 electron transporter RnfB compare
AO353_07610 +0.7 0.8 hypothetical protein compare
AO353_08855 +0.7 2.7 GntR family transcriptional regulator compare
AO353_09200 +0.7 3.3 transcriptional regulator compare
AO353_25575 +0.7 2.5 GNAT family acetyltransferase compare
AO353_00170 +0.7 1.9 lysozyme compare
AO353_04090 +0.7 1.9 leucyl-tRNA synthetase compare
AO353_24685 +0.7 1.3 hypothetical protein compare
AO353_12135 +0.7 3.1 rRNA methylase compare
AO353_14970 +0.7 2.3 hypothetical protein compare
AO353_26550 +0.7 1.5 hypothetical protein compare
AO353_13600 +0.7 2.3 precorrin-6Y C5,15-methyltransferase compare
AO353_11035 +0.7 4.8 hypothetical protein compare
AO353_06365 +0.7 5.4 hypothetical protein compare
AO353_08765 +0.7 3.2 hypothetical protein compare
AO353_27300 +0.7 3.7 phage tail protein compare
AO353_13465 +0.7 4.2 hypothetical protein compare
AO353_22120 +0.7 2.2 cyclic pyranopterin phosphate synthase MoaA compare
AO353_22950 +0.7 2.3 universal stress protein UspA compare
AO353_03450 +0.7 3.2 heme oxygenase compare
AO353_05230 +0.7 3.4 ribonuclease G compare
AO353_15440 +0.7 4.7 dihydropteridine reductase compare
AO353_19340 +0.7 5.5 amino acid ABC transporter substrate-binding protein compare
AO353_28300 +0.7 2.4 cupin compare
AO353_25845 +0.7 1.6 GNAT family acetyltransferase compare
AO353_15825 +0.7 2.1 serine acetyltransferase compare
AO353_08640 +0.7 2.2 hypothetical protein compare
AO353_09030 +0.7 0.7 iron donor protein CyaY compare
AO353_04320 +0.7 3.1 single-stranded-DNA-specific exonuclease RecJ compare
AO353_05210 +0.7 3.5 hypothetical protein compare
AO353_14440 +0.7 2.0 ABC transporter substrate-binding protein compare
AO353_00905 +0.7 2.0 GntR family transcriptional regulator compare
AO353_18060 +0.7 2.9 fimbrial protein compare
AO353_17525 +0.6 2.5 tRNA-Gly compare
AO353_22025 +0.6 1.4 iron-sulfur cluster repair di-iron protein compare
AO353_02010 +0.6 3.2 glycosyl transferase family 1 compare
AO353_11125 +0.6 2.9 5S ribosomal RNA compare
AO353_10950 +0.6 4.8 thiol:disulfide interchange protein compare
AO353_01015 +0.6 1.5 hypothetical protein compare
AO353_02605 +0.6 3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_05675 +0.6 3.5 protein RnfH compare
AO353_10090 +0.6 2.5 hypothetical protein compare
AO353_15875 +0.6 2.7 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_23170 +0.6 2.0 short-chain dehydrogenase compare
AO353_19360 +0.6 1.7 peroxiredoxin compare
AO353_07920 +0.6 2.8 hypothetical protein compare
AO353_23570 +0.6 2.3 LysR family transcriptional regulator compare
AO353_17380 +0.6 2.4 hypothetical protein compare
AO353_26525 +0.6 1.5 hypothetical protein compare
AO353_01355 +0.6 3.8 3-oxoacyl-ACP synthase compare
AO353_00115 +0.6 1.5 hypothetical protein compare
AO353_27315 +0.6 3.0 hypothetical protein compare
AO353_08760 +0.6 4.9 Xaa-Pro aminopeptidase compare
AO353_13300 +0.6 2.1 LOG family protein compare
AO353_01265 +0.6 2.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO353_02265 +0.6 3.4 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
AO353_24275 +0.6 1.2 transcriptional regulator compare
AO353_04775 +0.6 2.6 hypothetical protein compare
AO353_20980 +0.6 2.1 hypothetical protein compare
AO353_17005 +0.6 1.1 hypothetical protein compare
AO353_24255 +0.6 1.9 hypothetical protein compare
AO353_04580 +0.6 2.2 GIY-YIG nuclease compare
AO353_20925 +0.6 1.4 hypothetical protein compare
AO353_02195 +0.6 2.3 spermidine synthase compare
AO353_08835 +0.6 4.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_18465 +0.6 1.9 phosphohydrolase compare
AO353_06345 +0.6 5.2 histidine kinase compare
AO353_24760 +0.6 1.6 glutamine amidotransferase compare
AO353_13095 +0.6 2.0 flagellar motor protein MotB compare
AO353_07595 +0.6 2.0 transcriptional regulator compare
AO353_12935 +0.6 2.1 glycosyltransferase compare
AO353_11255 +0.6 2.0 RND transporter compare
AO353_19085 +0.6 1.4 organic hydroperoxide resistance protein compare
AO353_24000 +0.6 2.3 isochorismate synthase compare
AO353_08525 +0.5 2.0 purine nucleoside phosphorylase compare
AO353_22705 +0.5 1.8 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_07295 +0.5 4.6 aminoglycoside phosphotransferase compare
AO353_28055 +0.5 1.4 hypothetical protein compare
AO353_23620 +0.5 0.8 hypothetical protein compare
AO353_26715 +0.5 2.4 molybdenum ABC transporter substrate-binding protein compare
AO353_28935 +0.5 1.1 ATPase compare
AO353_25870 +0.5 1.5 peptide ABC transporter ATP-binding protein compare
AO353_01795 +0.5 1.4 hypothetical protein compare
AO353_27365 +0.5 1.6 hypothetical protein compare
AO353_12690 +0.5 0.7 acyl carrier protein compare
AO353_17850 +0.5 1.4 SAM-dependent methyltransferase compare
AO353_10270 +0.5 3.6 glycosyl transferase compare
AO353_06220 +0.5 2.3 IclR family transcriptional regulator compare
AO353_22595 +0.5 2.0 hypothetical protein compare
AO353_02615 +0.5 3.2 cobyric acid synthase compare
AO353_24175 +0.5 1.7 hypothetical protein compare
AO353_28455 +0.5 2.8 FMN-dependent NADH-azoreductase compare
AO353_14400 +0.5 2.1 Fis family transcriptional regulator compare
AO353_22990 +0.5 1.5 phospholipid-binding protein compare
AO353_01220 +0.5 1.2 hypothetical protein compare
AO353_21110 +0.5 1.2 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Gentamicin sulfate salt in Pseudomonas fluorescens FW300-N2E3

For stress Gentamicin sulfate salt across organisms