Experiment set4IT082 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Uridine carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_3038 -4.0 -3.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_5666 -3.8 -2.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_6031 -3.8 -4.3 Ribokinase (EC 2.7.1.15) (from data) compare
Pf1N1B4_2880 -3.6 -11.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1624 -3.5 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_6 -3.5 -5.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1067 -3.4 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2549 -3.3 -7.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1534 -3.2 -17.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2303 -3.2 -14.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1533 -3.1 -6.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3697 -3.1 -8.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1831 -3.1 -10.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2338 -3.1 -5.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1626 -3.1 -7.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2547 -3.0 -2.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_742 -3.0 -5.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1408 -3.0 -4.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1830 -2.9 -9.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5665 -2.9 -4.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2548 -2.9 -6.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2384 -2.9 -11.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2545 -2.9 -12.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1565 -2.9 -4.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_4678 -2.8 -3.8 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_5926 -2.8 -12.7 hypothetical protein compare
Pf1N1B4_15 -2.8 -4.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_5224 -2.8 -4.0 tRNA-Arg-CCT compare
Pf1N1B4_5924 -2.8 -9.9 hypothetical protein compare
Pf1N1B4_2380 -2.8 -13.3 Cytochrome B561 compare
Pf1N1B4_1307 -2.8 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5925 -2.7 -10.8 hypothetical protein compare
Pf1N1B4_2858 -2.6 -10.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2878 -2.5 -8.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_12 -2.5 -6.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2381 -2.5 -10.7 Protein yceI precursor compare
Pf1N1B4_1627 -2.4 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2009 -2.4 -5.5 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2850 -2.4 -6.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2272 -2.4 -3.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1434 -2.4 -6.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2010 -2.4 -6.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_58 -2.3 -6.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1315 -2.3 -7.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_762 -2.3 -6.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_350 -2.3 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1617 -2.3 -8.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_4065 -2.2 -7.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_952 -2.2 -3.5 Cell division protein MraZ compare
Pf1N1B4_5927 -2.2 -16.1 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_5649 -2.2 -3.2 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_2879 -2.1 -6.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2208 -2.1 -8.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_6035 -2.1 -3.3 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_847 -2.0 -7.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2487 -2.0 -8.4 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2284 -2.0 -4.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1906 -2.0 -3.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2859 -2.0 -12.4 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2282 -1.9 -8.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4990 -1.8 -2.8 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_2337 -1.8 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1668 -1.8 -5.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_1317 -1.8 -3.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_2011 -1.7 -7.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2706 -1.7 -2.9 FIG00954871: hypothetical protein compare
Pf1N1B4_6034 -1.7 -4.8 D-ribose ABC transporter, ATPase component RbsA (from data) compare
Pf1N1B4_257 -1.7 -5.8 sensor histidine kinase/response regulator compare
Pf1N1B4_5949 -1.6 -1.6 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_1 -1.6 -2.5 Colicin V production protein compare
Pf1N1B4_2493 -1.6 -2.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3849 -1.6 -3.9 Transcriptional regulator, GntR family compare
Pf1N1B4_3518 -1.6 -2.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1057 -1.6 -2.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3506 -1.6 -6.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1239 -1.6 -6.1 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) conserved
Pf1N1B4_4506 -1.5 -3.3 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_3927 -1.5 -1.9 hypothetical protein compare
Pf1N1B4_3468 -1.5 -2.0 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1147 -1.5 -6.1 Fructose repressor FruR, LacI family compare
Pf1N1B4_1625 -1.5 -5.3 FIG00956267: hypothetical protein compare
Pf1N1B4_4212 -1.5 -2.5 Gfa-like protein compare
Pf1N1B4_5618 -1.5 -3.3 Excinuclease ABC subunit C compare
Pf1N1B4_4494 -1.5 -3.2 hypothetical protein compare
Pf1N1B4_3812 -1.5 -6.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_3290 -1.5 -3.1 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_4493 -1.5 -3.7 FIG00443700: hypothetical protein compare
Pf1N1B4_2526 -1.4 -10.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1566 -1.4 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2885 -1.4 -5.0 Paraquat-inducible protein A compare
Pf1N1B4_5619 -1.3 -3.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_4516 -1.3 -2.5 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_6029 -1.3 -4.6 uridine nucleosidase (EC 3.2.2.3) (from data) compare
Pf1N1B4_4299 -1.3 -2.6 sensor histidine kinase compare
Pf1N1B4_1240 -1.3 -6.7 LysR family transcriptional regulator PA0133 conserved
Pf1N1B4_3430 -1.3 -8.8 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf1N1B4_5722 -1.2 -2.1 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_5464 -1.2 -2.6 Cointegrate resolution protein T compare
Pf1N1B4_3833 -1.2 -5.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3081 -1.2 -10.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_327 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_1614 -1.2 -2.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_4501 -1.2 -5.3 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf1N1B4_652 -1.2 -6.9 Sensory box histidine kinase compare
Pf1N1B4_3887 -1.2 -2.7 CAAX amino terminal protease family protein compare
Pf1N1B4_232 -1.2 -2.3 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4531 -1.2 -1.7 FIG01221261: hypothetical protein compare
Pf1N1B4_1837 -1.2 -1.9 Osmotically inducible protein C compare
Pf1N1B4_3906 -1.2 -3.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_590 -1.2 -6.8 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_1561 -1.2 -2.9 FIG00954300: hypothetical protein compare
Pf1N1B4_1568 -1.1 -3.3 Twin-arginine translocation protein TatB compare
Pf1N1B4_2886 -1.1 -7.1 Paraquat-inducible protein B compare
Pf1N1B4_4358 -1.1 -1.8 Acetyltransferase, GNAT family compare
Pf1N1B4_6045 -1.1 -2.2 CigR (Putative inner membrane protein) compare
Pf1N1B4_4839 -1.1 -1.7 lipoprotein compare
Pf1N1B4_3168 -1.1 -2.5 AmpG permease compare
Pf1N1B4_22 -1.1 -5.5 Transcriptional regulator, TetR family compare
Pf1N1B4_2912 -1.1 -1.7 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_4368 -1.1 -2.9 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_619 -1.1 -1.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_3408 -1.1 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_5684 -1.0 -3.0 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_886 -1.0 -1.9 FIG137478: Hypothetical protein compare
Pf1N1B4_614 -1.0 -2.7 Arginine/ornithine antiporter ArcD compare
Pf1N1B4_743 -1.0 -3.2 Sodium-type flagellar protein motY precursor compare
Pf1N1B4_2005 -1.0 -1.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_4765 -1.0 -1.7 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_2322 -1.0 -1.7 FIG015547: peptidase, M16 family compare
Pf1N1B4_539 -1.0 -1.5 Transcriptional regulators compare
Pf1N1B4_399 -1.0 -1.7 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_866 -1.0 -1.3 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1236 -1.0 -4.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2004 -1.0 -1.7 putative membrane protein compare
Pf1N1B4_611 -1.0 -2.1 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_4491 -1.0 -2.5 ABC transporter permease protein compare
Pf1N1B4_3234 -1.0 -1.9 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf1N1B4_5745 -1.0 -1.9 FIG139928: Putative protease compare
Pf1N1B4_835 -1.0 -2.1 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_348 -1.0 -2.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_1135 -1.0 -1.6 FIG00960055: hypothetical protein compare
Pf1N1B4_6030 -1.0 -2.3 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_231 -1.0 -2.8 Sensor histidine kinase compare
Pf1N1B4_1544 -0.9 -4.6 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1936 -0.9 -3.7 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_4729 -0.9 -1.5 Hemolysin-type calcium-binding region compare
Pf1N1B4_1238 -0.9 -5.9 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Pf1N1B4_2227 -0.9 -1.8 FIG019278: hypothetical protein compare
Pf1N1B4_5239 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_3328 -0.9 -1.6 Rhodanese-like domain protein compare
Pf1N1B4_1661 -0.9 -3.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_4558 -0.9 -2.1 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_3665 -0.9 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_1683 -0.9 -1.4 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_2763 -0.9 -2.1 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) compare
Pf1N1B4_1511 -0.9 -1.4 FIG027190: Putative transmembrane protein compare
Pf1N1B4_2150 -0.9 -1.6 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_2478 -0.9 -4.6 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_5039 -0.9 -2.4 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_627 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_4140 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_414 -0.9 -2.7 transcriptional regulator compare
Pf1N1B4_3501 -0.9 -3.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_4107 -0.9 -1.6 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3279 -0.9 -1.6 putative membrane protein compare
Pf1N1B4_63 -0.9 -1.6 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_4728 -0.9 -3.2 Na+/H+ antiporter NhaB compare
Pf1N1B4_3484 -0.9 -3.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_5591 -0.8 -1.5 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_2860 -0.8 -3.6 FIG00954153: hypothetical protein compare
Pf1N1B4_5505 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_448 -0.8 -1.2 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_3027 -0.8 -3.0 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_5834 -0.8 -1.6 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_1866 -0.8 -2.1 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_4173 -0.8 -2.6 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
Pf1N1B4_3692 -0.8 -1.8 Chaperone protein HtpG compare
Pf1N1B4_5720 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_219 -0.8 -2.5 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_4040 -0.8 -1.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3632 -0.8 -2.6 Flagellar motor rotation protein MotB compare
Pf1N1B4_76 -0.8 -1.7 ATP binding protein compare
Pf1N1B4_5306 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_4169 -0.8 -2.5 Hydrolases of the alpha/beta superfamily compare
Pf1N1B4_255 -0.8 -2.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_3670 -0.8 -2.4 probable glucosyl transferase compare
Pf1N1B4_5346 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_5274 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_2823 -0.8 -1.5 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_5254 -0.8 -2.5 hypothetical protein compare
Pf1N1B4_962 -0.8 -4.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_1402 -0.8 -2.2 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_1234 -0.8 -2.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_4903 -0.8 -2.1 ABC-type protease exporter, outer membrane component PrtF/AprF compare
Pf1N1B4_960 -0.8 -5.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_899 -0.8 -1.1 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_2224 -0.8 -1.3 FIG00953390: hypothetical protein compare
Pf1N1B4_4554 -0.8 -1.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_1153 -0.8 -2.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_1782 -0.8 -1.5 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Uridine in Pseudomonas fluorescens FW300-N1B4

For carbon source Uridine across organisms