Experiment set4IT082 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Uridine carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_407 +1.6 2.5 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_5109 +1.3 2.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_4429 +1.2 2.2 No significant database matches compare
Pf1N1B4_3050 +1.2 4.2 FIG00958830: hypothetical protein compare
Pf1N1B4_1403 +1.1 5.6 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2736 +1.1 2.4 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_4687 +1.1 5.6 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf1N1B4_5708 +1.1 3.1 Transcriptional regulator, TetR family compare
Pf1N1B4_5763 +1.1 2.4 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_538 +1.1 2.2 hypothetical protein compare
Pf1N1B4_2102 +1.0 1.8 hypothetical protein compare
Pf1N1B4_4872 +1.0 1.9 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_201 +1.0 2.3 ABC transporter in pyoverdin gene cluster, ATP-binding component compare
Pf1N1B4_4076 +1.0 2.4 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_4177 +1.0 2.0 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_4343 +1.0 2.1 hypothetical protein compare
Pf1N1B4_761 +1.0 2.1 FIG00954879: hypothetical protein compare
Pf1N1B4_4929 +1.0 2.0 Opine oxidase subunit B compare
Pf1N1B4_695 +1.0 2.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_3115 +1.0 6.2 RNA polymerase sigma factor RpoS compare
Pf1N1B4_3485 +1.0 1.9 hypothetical protein compare
Pf1N1B4_4755 +1.0 2.0 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_5871 +1.0 2.0 FIG00963848: hypothetical protein compare
Pf1N1B4_4590 +1.0 2.4 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_1707 +1.0 3.1 Efflux membrane fusion protein, RND family compare
Pf1N1B4_5920 +1.0 2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_2106 +1.0 2.6 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3909 +0.9 1.8 Cell division inhibitor-related protein compare
Pf1N1B4_969 +0.9 8.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf1N1B4_2190 +0.9 5.7 Regulator of sigma D compare
Pf1N1B4_2247 +0.9 2.1 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_1334 +0.9 1.5 FIG00955840: hypothetical protein compare
Pf1N1B4_973 +0.9 8.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf1N1B4_13 +0.9 2.1 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_288 +0.9 6.1 FIG00958794: hypothetical protein compare
Pf1N1B4_1612 +0.9 2.1 FIG00955429: hypothetical protein compare
Pf1N1B4_1528 +0.9 2.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_683 +0.9 3.0 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_4402 +0.9 2.0 SoxH protein, homolog compare
Pf1N1B4_688 +0.9 1.6 FIG00955483: hypothetical protein compare
Pf1N1B4_5073 +0.9 2.3 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_4349 +0.9 2.3 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_4333 +0.9 2.2 hypothetical protein compare
Pf1N1B4_1756 +0.9 2.4 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_3352 +0.9 2.4 tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34) compare
Pf1N1B4_4937 +0.9 2.8 Two-component hybrid sensor and regulator compare
Pf1N1B4_3785 +0.9 1.5 FOG: Ankyrin repeat compare
Pf1N1B4_5018 +0.9 1.8 FIG00962345: hypothetical protein compare
Pf1N1B4_5659 +0.9 6.3 NfuA Fe-S protein maturation compare
Pf1N1B4_1115 +0.8 6.0 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_2269 +0.8 1.9 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_5282 +0.8 2.4 Phage protein compare
Pf1N1B4_292 +0.8 7.9 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_4847 +0.8 2.2 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_3722 +0.8 2.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5552 +0.8 1.9 hypothetical protein compare
Pf1N1B4_972 +0.8 7.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf1N1B4_1180 +0.8 1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_3764 +0.8 1.8 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_290 +0.8 7.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5870 +0.8 1.6 VgrG protein compare
Pf1N1B4_291 +0.8 3.9 Major outer membrane lipoprotein I compare
Pf1N1B4_3507 +0.8 6.3 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf1N1B4_5919 +0.8 2.8 Signal transduction response regulator / Tetratricopeptide repeat-containing protein compare
Pf1N1B4_4505 +0.8 1.9 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_2724 +0.8 4.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_5146 +0.8 1.4 Chromosome initiation inhibitor compare
Pf1N1B4_5607 +0.8 2.0 C4-dicarboxylate transport protein compare
Pf1N1B4_4521 +0.8 2.2 Probable transmembrane protein compare
Pf1N1B4_3413 +0.8 1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_3435 +0.8 1.5 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_5447 +0.8 1.8 hypothetical protein compare
Pf1N1B4_228 +0.8 1.8 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_4393 +0.8 1.0 Ferredoxin reductase compare
Pf1N1B4_1466 +0.8 3.5 hypothetical protein compare
Pf1N1B4_971 +0.8 6.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf1N1B4_4319 +0.8 2.3 Phosphonate ABC transporter permease protein phnE1 (TC 3.A.1.9.1) compare
Pf1N1B4_2784 +0.8 2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4700 +0.8 1.0 FIG00956898: hypothetical protein compare
Pf1N1B4_1704 +0.7 2.2 hypothetical protein compare
Pf1N1B4_970 +0.7 5.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf1N1B4_3800 +0.7 1.6 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_5829 +0.7 1.6 FIG005107: hypothetical protein compare
Pf1N1B4_2072 +0.7 2.4 Phosphoprotein phosphatase PppA compare
Pf1N1B4_289 +0.7 6.3 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_3688 +0.7 3.5 FIG00956657: hypothetical protein compare
Pf1N1B4_287 +0.7 4.6 Possible periplasmic thiredoxin compare
Pf1N1B4_4108 +0.7 1.5 Hydrolase, alpha/beta fold family compare
Pf1N1B4_1475 +0.7 3.5 FIG00962376: hypothetical protein compare
Pf1N1B4_1116 +0.7 5.6 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_4812 +0.7 1.9 Site-specific recombinase, phage integrase family compare
Pf1N1B4_1154 +0.7 1.9 FIG00957702: hypothetical protein compare
Pf1N1B4_5102 +0.7 2.5 Putative glutathione transporter, permease component compare
Pf1N1B4_5015 +0.7 1.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf1N1B4_5833 +0.7 1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_164 +0.7 1.3 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_54 +0.7 2.3 Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) compare
Pf1N1B4_4518 +0.7 1.4 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_4650 +0.7 2.1 Aspartate racemase (EC 5.1.1.13) compare
Pf1N1B4_4326 +0.7 1.5 N-carbamoylputrescine amidase (3.5.1.53) compare
Pf1N1B4_998 +0.7 2.7 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_4582 +0.7 1.2 hypothetical protein compare
Pf1N1B4_4873 +0.7 2.2 clavaldehyde dehydrogenase compare
Pf1N1B4_3843 +0.7 2.2 Ribosome modulation factor compare
Pf1N1B4_4280 +0.7 1.9 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_3787 +0.7 1.9 FIG00960829: hypothetical protein compare
Pf1N1B4_4560 +0.7 1.3 Transcriptional regulator, MerR family compare
Pf1N1B4_4542 +0.7 1.9 IcmF-related protein compare
Pf1N1B4_1246 +0.7 1.3 FIG00954047: hypothetical protein compare
Pf1N1B4_1042 +0.7 2.0 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_2925 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4004 +0.7 1.3 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_3191 +0.7 1.1 FIG00953505: hypothetical protein compare
Pf1N1B4_4165 +0.7 2.2 Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) compare
Pf1N1B4_4455 +0.7 1.1 FIG00953528: hypothetical protein compare
Pf1N1B4_1335 +0.7 4.2 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_1691 +0.7 1.3 hypothetical protein compare
Pf1N1B4_1293 +0.7 2.0 hypothetical protein compare
Pf1N1B4_4980 +0.7 1.0 putative lipoprotein compare
Pf1N1B4_4043 +0.7 1.6 Type II and III secretion system family protein compare
Pf1N1B4_3831 +0.7 3.1 CmpX compare
Pf1N1B4_4810 +0.7 1.4 Polymyxin resistance protein PmrM compare
Pf1N1B4_3241 +0.7 1.1 hypothetical protein compare
Pf1N1B4_5779 +0.7 1.2 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_2413 +0.7 1.8 Permeases of the major facilitator superfamily compare
Pf1N1B4_3510 +0.7 2.5 nucleoprotein/polynucleotide-associated enzyme compare
Pf1N1B4_5090 +0.7 1.3 glycosyl transferase, family 2 compare
Pf1N1B4_5512 +0.6 1.1 hypothetical protein compare
Pf1N1B4_5820 +0.6 1.5 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_4569 +0.6 1.5 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_4350 +0.6 2.2 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf1N1B4_5892 +0.6 1.6 FIG00961753: hypothetical protein compare
Pf1N1B4_4604 +0.6 1.9 FMN reductase, NADPH-dependent compare
Pf1N1B4_4341 +0.6 2.0 hypothetical protein compare
Pf1N1B4_2958 +0.6 1.2 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_3134 +0.6 1.2 probable tail fiber assembly-like protein compare
Pf1N1B4_308 +0.6 2.1 FIG00956090: hypothetical protein compare
Pf1N1B4_4100 +0.6 1.4 probable transmembrane protein compare
Pf1N1B4_501 +0.6 1.2 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_5590 +0.6 1.5 Trans-feruloyl-CoA synthase (EC 6.2.1.34) compare
Pf1N1B4_2491 +0.6 2.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_5985 +0.6 2.2 FIG002465: BNR repeat protein compare
Pf1N1B4_4049 +0.6 2.3 Nudix-like NDP and NTP phosphohydrolase YmfB compare
Pf1N1B4_5674 +0.6 0.9 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_1069 +0.6 3.2 YrbA protein compare
Pf1N1B4_4255 +0.6 1.7 Putative phosphatase YfbT compare
Pf1N1B4_4869 +0.6 1.7 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_4995 +0.6 2.0 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
Pf1N1B4_4571 +0.6 1.5 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_5031 +0.6 1.6 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_3959 +0.6 1.6 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37) compare
Pf1N1B4_4661 +0.6 1.3 Cell division inhibitor SULA compare
Pf1N1B4_4762 +0.6 1.7 hypothetical protein compare
Pf1N1B4_2382 +0.6 4.3 ATP-dependent RNA helicase RhlE compare
Pf1N1B4_5570 +0.6 3.4 hypothetical protein compare
Pf1N1B4_2281 +0.6 1.9 Predicted integral membrane protein compare
Pf1N1B4_919 +0.6 1.3 hypothetical protein compare
Pf1N1B4_603 +0.6 1.8 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_1428 +0.6 2.3 Flagellar motor rotation protein MotB compare
Pf1N1B4_1194 +0.6 1.2 hypothetical protein compare
Pf1N1B4_656 +0.6 3.7 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_5283 +0.6 1.4 hypothetical protein compare
Pf1N1B4_3200 +0.6 1.7 Outer membrane lipoprotein compare
Pf1N1B4_115 +0.6 0.9 Membrane protein mosC compare
Pf1N1B4_2637 +0.6 2.9 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
Pf1N1B4_2026 +0.6 1.8 Transcriptional regulator compare
Pf1N1B4_3126 +0.6 1.6 Phage tail length tape-measure protein compare
Pf1N1B4_2047 +0.6 2.0 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_4282 +0.6 1.7 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_5508 +0.6 1.3 hypothetical protein compare
Pf1N1B4_4685 +0.6 2.0 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Pf1N1B4_4220 +0.6 1.2 Maebl compare
Pf1N1B4_3920 +0.6 1.5 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf1N1B4_3779 +0.6 1.6 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_3942 +0.6 1.8 Murein-DD-endopeptidase (EC 3.4.99.-) compare
Pf1N1B4_262 +0.6 5.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_1714 +0.6 2.4 Methionine ABC transporter substrate-binding protein compare
Pf1N1B4_3804 +0.6 2.1 Glycine-rich cell wall structural protein precursor compare
Pf1N1B4_3451 +0.6 1.6 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_5853 +0.6 1.4 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_4151 +0.6 2.1 FIG00960153: hypothetical protein compare
Pf1N1B4_286 +0.6 4.2 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Pf1N1B4_5912 +0.6 1.7 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4370 +0.6 2.1 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 compare
Pf1N1B4_981 +0.6 1.7 UPF0246 protein YaaA compare
Pf1N1B4_5435 +0.6 1.1 hypothetical protein compare
Pf1N1B4_1974 +0.6 1.0 L-lysine permease compare
Pf1N1B4_731 +0.6 1.5 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_920 +0.6 3.3 ATP-dependent RNA helicase RhlB compare
Pf1N1B4_117 +0.6 2.5 Iron siderophore sensor protein compare
Pf1N1B4_5973 +0.6 1.8 Probable permease of ABC transporter compare
Pf1N1B4_4405 +0.6 1.8 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf1N1B4_3275 +0.6 1.9 L-lysine permease compare
Pf1N1B4_5383 +0.6 4.3 hypothetical protein compare
Pf1N1B4_133 +0.6 1.6 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_2433 +0.6 1.4 FIG00953108: hypothetical protein compare
Pf1N1B4_4104 +0.6 1.3 Probable transmembrane protein compare
Pf1N1B4_4403 +0.6 1.2 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_914 +0.6 2.5 ABC-type polar amino acid transport system, ATPase component compare
Pf1N1B4_4476 +0.6 1.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Uridine in Pseudomonas fluorescens FW300-N1B4

For carbon source Uridine across organisms