Experiment set4IT082 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_41.1_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_00540 -5.8 -2.3 hypothetical protein compare
CSW01_00940 -4.6 -1.5 hypothetical protein compare
CSW01_00450 -4.4 -2.0 SCP2 domain-containing protein compare
CSW01_03205 -4.2 -11.6 iron ABC transporter substrate-binding protein compare
CSW01_11555 -4.2 -2.9 riboflavin synthase compare
CSW01_18350 -4.1 -1.9 cell division protein DedD compare
CSW01_03215 -4.1 -14.8 ABC transporter ATP-binding protein compare
CSW01_01485 -4.1 -4.8 transcriptional regulator compare
CSW01_13285 -4.1 -2.8 ribulose-phosphate 3-epimerase compare
CSW01_11560 -3.9 -2.7 riboflavin biosynthesis protein RibD compare
CSW01_03210 -3.8 -13.9 iron ABC transporter permease compare
CSW01_12365 -3.7 -4.4 inorganic phosphate transporter compare
CSW01_12005 -3.6 -2.5 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_00015 -3.6 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_08985 -3.6 -1.8 6-phospho-beta-glucosidase compare
CSW01_02755 -3.6 -2.4 glutamyl-tRNA amidotransferase compare
CSW01_17745 -3.5 -3.4 diacylglycerol kinase compare
CSW01_18635 -3.5 -7.0 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_06380 -3.4 -2.3 GTP cyclohydrolase II compare
CSW01_11730 -3.4 -3.8 2-dehydropantoate 2-reductase compare
CSW01_00560 -3.1 -7.8 DNA polymerase I compare
CSW01_00460 -3.1 -6.1 twin-arginine translocase subunit TatA compare
CSW01_13805 -3.1 -7.1 Hsp33 family molecular chaperone HslO compare
CSW01_10280 -3.0 -7.1 heme exporter protein C compare
CSW01_04820 -3.0 -9.8 serine hydroxymethyltransferase compare
CSW01_05575 -3.0 -2.1 phosphate acetyltransferase compare
CSW01_03410 -2.9 -3.2 polyribonucleotide nucleotidyltransferase compare
CSW01_14055 -2.8 -6.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_03980 -2.7 -9.1 IMP dehydrogenase compare
CSW01_10270 -2.5 -4.2 cytochrome c-type biogenesis protein CcmE compare
CSW01_00025 -2.4 -1.1 membrane protein insertion efficiency factor YidD compare
CSW01_00470 -2.4 -3.3 twin-arginine translocase subunit TatC compare
CSW01_12320 -2.4 -4.2 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_11215 -2.3 -6.3 flagellar hook assembly protein FlgD compare
CSW01_02490 -2.3 -9.2 glutathione synthetase compare
CSW01_13305 -2.3 -2.2 shikimate kinase compare
CSW01_09525 -2.3 -2.0 DNA translocase FtsK compare
CSW01_17200 -2.2 -2.5 DUF333 domain-containing protein compare
CSW01_09485 -2.2 -3.2 DUF1425 domain-containing protein compare
CSW01_13450 -2.2 -4.1 EF-P beta-lysylation protein EpmB compare
CSW01_02875 -2.2 -5.7 DNA recombination/repair protein RecA compare
CSW01_10265 -2.2 -6.0 c-type cytochrome biogenesis protein CcmF compare
CSW01_10195 -2.2 -2.8 hypothetical protein compare
CSW01_00095 -2.2 -2.8 hypothetical protein compare
CSW01_12885 -2.2 -7.2 fructose 1,6-bisphosphatase compare
CSW01_03325 -2.1 -4.1 porin compare
CSW01_13635 -2.1 -8.6 thiol:disulfide interchange protein DsbD compare
CSW01_10260 -2.1 -2.4 thiol:disulfide interchange protein DsbE compare
CSW01_01875 -2.1 -2.8 hypothetical protein compare
CSW01_08565 -2.1 -1.5 hypothetical protein compare
CSW01_07580 -2.1 -1.5 hypothetical protein compare
CSW01_08935 -2.0 -1.7 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_11780 -2.0 -4.4 exodeoxyribonuclease V subunit beta compare
CSW01_14085 -2.0 -3.0 transcriptional regulator compare
CSW01_00500 -2.0 -11.4 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_17885 -2.0 -2.1 hypothetical protein compare
CSW01_09035 -1.9 -2.6 IclR family transcriptional regulator compare
CSW01_02970 -1.9 -7.2 glutamate--cysteine ligase compare
CSW01_19210 -1.9 -1.8 DUF3081 domain-containing protein compare
CSW01_03695 -1.9 -5.5 ribosomal large subunit pseudouridine synthase D compare
CSW01_09465 -1.9 -6.3 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_05065 -1.9 -4.3 N-acetylglucosamine repressor compare
CSW01_03795 -1.9 -1.7 phosphate ABC transporter ATP-binding protein compare
CSW01_01490 -1.9 -3.3 Fis family transcriptional regulator compare
CSW01_17495 -1.9 -6.3 glycerol-3-phosphate dehydrogenase compare
CSW01_06325 -1.9 -1.7 hypothetical protein compare
CSW01_11115 -1.8 -2.7 hypothetical protein compare
CSW01_12680 -1.8 -6.3 cytosol aminopeptidase compare
CSW01_15535 -1.8 -3.0 NUDIX hydrolase compare
CSW01_05580 -1.8 -5.3 acetate kinase compare
CSW01_05315 -1.8 -3.4 RNA polymerase subunit sigma compare
CSW01_04285 -1.7 -2.0 toxin coregulated pilus biosynthesis protein R compare
CSW01_01820 -1.7 -5.7 N-acetylmuramoyl-L-alanine amidase compare
CSW01_18730 -1.7 -0.9 DUF406 domain-containing protein compare
CSW01_05730 -1.7 -9.2 inosine/guanosine kinase compare
CSW01_18150 -1.6 -0.8 transcription initiation factor TFIIIB compare
CSW01_07085 -1.6 -4.9 carboxypeptidase M32 compare
CSW01_01125 -1.6 -6.3 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_13810 -1.6 -6.1 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_02450 -1.6 -5.9 pyrroline-5-carboxylate reductase compare
CSW01_10605 -1.6 -1.8 flagellar motor switch protein FliN compare
CSW01_10315 -1.6 -3.6 chemotaxis response regulator protein-glutamate methylesterase compare
CSW01_12255 -1.6 -2.9 flavodoxin FldB compare
CSW01_09720 -1.6 -1.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_12735 -1.6 -3.6 RidA family protein compare
CSW01_06935 -1.5 -1.6 exonuclease compare
CSW01_00650 -1.5 -5.3 tyrosine recombinase XerC compare
CSW01_10295 -1.5 -2.3 DUF2802 domain-containing protein compare
CSW01_16690 -1.5 -1.0 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_10875 -1.5 -5.5 redox-regulated ATPase YchF compare
CSW01_05220 -1.5 -4.9 cyclic pyranopterin monophosphate synthase MoaC compare
CSW01_11785 -1.5 -2.3 exonuclease V subunit gamma compare
CSW01_10560 -1.5 -2.8 chorismate synthase compare
CSW01_12130 -1.4 -2.0 DUF721 domain-containing protein compare
CSW01_12610 -1.4 -1.6 3-isopropylmalate dehydratase small subunit compare
CSW01_00870 -1.4 -2.0 cytochrome c5 family protein compare
CSW01_11670 -1.4 -1.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_10290 -1.4 -2.7 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_09180 -1.4 -4.3 quinolinate synthase compare
CSW01_09815 -1.4 -1.9 TetR/AcrR family transcriptional regulator compare
CSW01_09240 -1.4 -3.5 Holliday junction branch migration DNA helicase RuvB compare
CSW01_16130 -1.4 -0.7 acetyltransferase compare
CSW01_11920 -1.4 -4.7 NupC/NupG family nucleoside CNT transporter compare
CSW01_10375 -1.3 -1.5 HIT family protein compare
CSW01_03785 -1.3 -2.2 phosphate ABC transporter permease compare
CSW01_13445 -1.3 -2.1 elongation factor P compare
CSW01_04990 -1.3 -1.7 hypothetical protein compare
CSW01_15680 -1.3 -1.6 DUF3265 domain-containing protein compare
CSW01_15425 -1.3 -1.0 DUF3265 domain-containing protein compare
CSW01_07060 -1.3 -1.9 TetR/AcrR family transcriptional regulator compare
CSW01_15660 -1.3 -1.0 cell shape-determining protein MreC compare
CSW01_09250 -1.3 -1.4 crossover junction endodeoxyribonuclease RuvC compare
CSW01_10440 -1.3 -2.3 succinate dehydrogenase flavoprotein subunit compare
CSW01_04850 -1.3 -1.6 septal ring lytic transglycosylase RlpA compare
CSW01_07150 -1.3 -1.7 spermidine/putrescine ABC transporter permease PotC compare
CSW01_15205 -1.3 -4.0 HTH-type transcriptional regulator UlaR compare
CSW01_16255 -1.2 -2.8 hypothetical protein compare
CSW01_09040 -1.2 -2.4 primosomal protein compare
CSW01_02530 -1.2 -3.4 D-erythrose-4-phosphate dehydrogenase compare
CSW01_17325 -1.2 -3.3 transaldolase compare
CSW01_10340 -1.2 -2.0 MinD/ParA family protein compare
CSW01_08830 -1.2 -1.1 integrase compare
CSW01_00465 -1.2 -1.5 twin-arginine translocase subunit TatB compare
CSW01_14815 -1.2 -1.7 hypothetical protein compare
CSW01_06790 -1.2 -2.8 maleylacetoacetate isomerase compare
CSW01_11225 -1.2 -3.8 flagellar basal body rod protein FlgB compare
CSW01_14080 -1.1 -0.7 DUF3283 domain-containing protein compare
CSW01_06395 -1.1 -3.8 iron-regulated protein A compare
CSW01_07520 -1.1 -2.4 RNA chaperone ProQ compare
CSW01_10740 -1.1 -1.1 peptidase M15 compare
CSW01_14680 -1.1 -0.6 aminotransferase compare
CSW01_07810 -1.1 -2.0 glycerophosphoryl diester phosphodiesterase compare
CSW01_07770 -1.1 -1.9 MotA/TolQ/ExbB proton channel family protein compare
CSW01_09045 -1.1 -2.0 hypothetical protein compare
CSW01_06400 -1.1 -3.4 DUF1513 domain-containing protein compare
CSW01_10590 -1.1 -1.3 flagellar biosynthetic protein FliQ compare
CSW01_16835 -1.1 -2.9 catabolite repressor/activator compare
CSW01_11220 -1.1 -2.4 flagellar basal body rod protein FlgC compare
CSW01_09990 -1.1 -1.4 hypothetical protein compare
CSW01_06385 -1.1 -4.4 peptidase compare
CSW01_06455 -1.1 -1.7 DNA-binding response regulator compare
CSW01_03790 -1.1 -2.1 phosphate ABC transporter, permease protein PstA compare
CSW01_09440 -1.0 -2.3 PilZ domain-containing protein compare
CSW01_10745 -1.0 -1.2 DUF2897 domain-containing protein compare
CSW01_11175 -1.0 -3.5 flagellar hook-associated protein 3 compare
CSW01_18310 -1.0 -1.0 hypothetical protein compare
CSW01_19125 -1.0 -1.0 branched-chain amino acid ABC transporter compare
CSW01_07435 -1.0 -0.6 hypothetical protein compare
CSW01_11210 -1.0 -3.2 flagellar hook protein FlgE compare
CSW01_16590 -1.0 -0.7 N-acetyltransferase compare
CSW01_07135 -1.0 -2.5 chromosome partitioning protein ParA compare
CSW01_06225 -1.0 -2.5 cytidine deaminase compare
CSW01_10145 -1.0 -2.2 ribonuclease E compare
CSW01_01920 -1.0 -1.4 bacterioferritin compare
CSW01_06885 -1.0 -1.8 hypothetical protein compare
CSW01_14335 -1.0 -1.9 ATP-dependent helicase compare
CSW01_14625 -1.0 -1.1 hypothetical protein compare
CSW01_05815 -1.0 -0.8 glutaredoxin compare
CSW01_13420 -1.0 -1.7 elongation factor P--(R)-beta-lysine ligase compare
CSW01_05165 -1.0 -0.8 electron transport complex subunit RsxC compare
CSW01_11915 -1.0 -1.8 hypothetical protein compare
CSW01_06810 -1.0 -0.7 hypothetical protein compare
CSW01_06615 -1.0 -1.5 DUF2947 domain-containing protein compare
CSW01_13675 -1.0 -2.4 bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase compare
CSW01_08355 -1.0 -1.4 heat-shock protein HslJ compare
CSW01_06390 -1.0 -2.8 thiol oxidoreductase compare
CSW01_10020 -1.0 -4.8 ROK family protein compare
CSW01_12090 -1.0 -2.2 hypothetical protein compare
CSW01_04320 -1.0 -4.5 type 4 prepilin-like proteins leader peptide-processing enzyme compare
CSW01_15155 -1.0 -2.5 phosphoribosyl-AMP cyclohydrolase compare
CSW01_13670 -1.0 -1.2 DNA-directed RNA polymerase subunit omega compare
CSW01_07195 -1.0 -2.1 cytochrome biogenesis protein compare
CSW01_08625 -0.9 -2.7 chromosome partition protein MukE compare
CSW01_10075 -0.9 -3.5 endolytic transglycosylase MltG compare
CSW01_14875 -0.9 -1.1 chromosome partitioning protein ParA compare
CSW01_04900 -0.9 -2.5 magnesium and cobalt efflux protein CorC compare
CSW01_10750 -0.9 -1.8 outer membrane protein assembly factor BamC compare
CSW01_12120 -0.9 -1.6 8-oxo-dGTP diphosphatase MutT compare
CSW01_05225 -0.9 -1.7 molybdopterin synthase sulfur carrier subunit compare
CSW01_07500 -0.9 -0.7 DUF2835 domain-containing protein compare
CSW01_02890 -0.9 -3.3 aspartate kinase compare
CSW01_01915 -0.9 -1.3 bacterioferritin-associated ferredoxin compare
CSW01_00170 -0.9 -2.0 thiol:disulfide interchange protein DsbA compare
CSW01_11880 -0.9 -1.1 hypothetical protein compare
CSW01_01015 -0.9 -5.0 DNA helicase II compare
CSW01_15685 -0.9 -1.9 toxin compare
CSW01_12535 -0.9 -1.5 cell division protein ZapA compare
CSW01_08350 -0.9 -2.0 DUF1289 domain-containing protein compare
CSW01_04335 -0.9 -2.2 RDD family protein compare
CSW01_10445 -0.9 -1.4 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_08125 -0.9 -1.2 glutaredoxin family protein compare
CSW01_12465 -0.9 -2.8 elongation factor 4 compare
CSW01_10405 -0.9 -3.1 Mn2+/Zn2+ABC transporter ATP-binding protein compare
CSW01_08015 -0.9 -2.0 ABC transporter substrate-binding protein compare
CSW01_13565 -0.9 -2.1 cell division protein ZapB compare
CSW01_14060 -0.9 -1.6 hypothetical protein compare
CSW01_16040 -0.9 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_13165 -0.9 -3.9 sel1 repeat family protein compare
CSW01_10240 -0.9 -2.9 short-chain dehydrogenase compare
CSW01_07870 -0.9 -2.4 ABC transporter ATP-binding protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms