Experiment set4IT082 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2'-Deoxyinosine 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04390 +2.6 18.3 ATP-binding cassette, subfamily B compare
H281DRAFT_04391 +2.3 17.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00885 +2.0 8.9 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_06120 +2.0 2.3 hypothetical protein compare
H281DRAFT_02683 +1.9 1.6 xanthine dehydrogenase accessory factor compare
H281DRAFT_02224 +1.7 2.1 rod shape-determining protein MreC compare
H281DRAFT_01390 +1.6 2.4 hypothetical protein compare
H281DRAFT_04270 +1.5 7.0 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_03460 +1.5 1.7 Protein of unknown function (DUF2950) compare
H281DRAFT_02148 +1.4 3.0 cytochrome c compare
H281DRAFT_01184 +1.4 1.5 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_01033 +1.4 1.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00298 +1.4 2.0 hypothetical protein compare
H281DRAFT_01311 +1.3 2.6 fructose-bisphosphate aldolase compare
H281DRAFT_05210 +1.3 1.6 Sugar phosphate isomerase/epimerase compare
H281DRAFT_04990 +1.3 3.7 type III secretion translocon protein HrpF compare
H281DRAFT_01310 +1.3 3.9 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_03440 +1.3 1.7 PAP2 superfamily protein compare
H281DRAFT_04219 +1.3 5.5 Cytochrome c553 compare
H281DRAFT_04269 +1.3 8.0 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_00487 +1.3 2.1 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_01262 +1.3 2.5 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04268 +1.2 7.7 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_04220 +1.2 6.3 Cytochrome c, mono- and diheme variants compare
H281DRAFT_01305 +1.2 2.8 hypothetical protein compare
H281DRAFT_04400 +1.2 8.2 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_00895 +1.1 3.6 trigger factor compare
H281DRAFT_03061 +1.1 2.4 hypothetical protein compare
H281DRAFT_00927 +1.1 5.4 UPF0755 protein compare
H281DRAFT_05778 +1.1 1.9 flagellar motor switch protein FliN/FliY compare
H281DRAFT_02702 +1.1 1.6 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_04228 +1.0 4.6 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_01748 +1.0 3.7 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_05983 +1.0 1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_03069 +1.0 1.4 Uncharacterized conserved protein compare
H281DRAFT_01484 +1.0 2.5 transcriptional regulator, AraC family compare
H281DRAFT_01025 +1.0 1.2 transcriptional regulator, MarR family compare
H281DRAFT_06163 +1.0 1.3 hypothetical protein compare
H281DRAFT_05816 +1.0 7.4 soluble lytic murein transglycosylase compare
H281DRAFT_01474 +0.9 1.4 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_06567 +0.9 1.7 hypothetical protein compare
H281DRAFT_01145 +0.9 2.2 hopanoid biosynthesis associated protein HpnK compare
H281DRAFT_00888 +0.9 2.3 phytoene synthase compare
H281DRAFT_00875 +0.9 3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_05289 +0.9 1.2 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_05445 +0.9 2.3 protein of unknown function (DUF4440) compare
H281DRAFT_01767 +0.9 1.2 hypothetical protein compare
H281DRAFT_04786 +0.9 2.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05967 +0.9 1.3 Cupredoxin-like domain-containing protein compare
H281DRAFT_00066 +0.9 1.9 hypothetical protein compare
H281DRAFT_05724 +0.9 4.7 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_00377 +0.9 1.5 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_05764 +0.9 3.1 flagellar basal-body rod modification protein FlgD compare
H281DRAFT_04857 +0.9 1.3 hypothetical protein compare
H281DRAFT_05908 +0.9 1.5 hypothetical protein compare
H281DRAFT_05297 +0.9 1.3 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_00870 +0.9 1.8 putative ABC transport system ATP-binding protein compare
H281DRAFT_05540 +0.9 2.3 transcriptional regulator, LacI family compare
H281DRAFT_03100 +0.9 1.3 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_04229 +0.9 4.9 glycerol kinase compare
H281DRAFT_03849 +0.9 1.9 protein of unknown function (DUF4863) compare
H281DRAFT_01240 +0.9 2.1 hypothetical protein compare
H281DRAFT_04250 +0.9 3.9 DNA-binding protein Fis compare
H281DRAFT_06253 +0.9 3.4 cell division protein ZapD compare
H281DRAFT_06069 +0.9 2.3 tRNA pseudouridine38-40 synthase compare
H281DRAFT_00731 +0.9 1.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_03226 +0.9 1.0 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_03199 +0.8 3.6 flagellar transcriptional activator FlhD compare
H281DRAFT_04386 +0.8 2.2 hypothetical protein compare
H281DRAFT_00643 +0.8 2.4 3-oxoacyl-[acyl-carrier-protein] reductase compare
H281DRAFT_00837 +0.8 2.1 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_04773 +0.8 2.5 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_03411 +0.8 2.2 hypothetical protein compare
H281DRAFT_00654 +0.8 2.0 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_03220 +0.8 1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_00470 +0.8 4.5 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_02007 +0.8 6.0 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_00678 +0.8 3.0 hypothetical protein compare
H281DRAFT_05122 +0.8 3.3 host factor-I protein compare
H281DRAFT_01183 +0.8 0.7 Sugar lactone lactonase YvrE compare
H281DRAFT_05456 +0.8 1.8 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase compare
H281DRAFT_06266 +0.8 2.4 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_01838 +0.8 2.8 regulator RcnB of Ni and Co efflux compare
H281DRAFT_02355 +0.8 5.7 type II secretion system protein E (GspE) compare
H281DRAFT_05274 +0.8 0.8 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_05991 +0.8 2.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase compare
H281DRAFT_04858 +0.8 0.9 hypothetical protein compare
H281DRAFT_02193 +0.8 0.8 hypothetical protein compare
H281DRAFT_01360 +0.8 3.0 transcriptional regulator, TetR family compare
H281DRAFT_05881 +0.8 1.3 D-amino-acid dehydrogenase compare
H281DRAFT_05371 +0.8 3.2 OmpA-OmpF porin, OOP family compare
H281DRAFT_05901 +0.8 1.7 Cupin domain-containing protein compare
H281DRAFT_00201 +0.8 1.7 hypothetical protein compare
H281DRAFT_04805 +0.8 1.5 methyltransferase, FkbM family compare
H281DRAFT_02581 +0.8 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03147 +0.8 1.1 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_01085 +0.8 1.2 Membrane protein TerC, possibly involved in tellurium resistance compare
H281DRAFT_05419 +0.8 2.5 hypothetical protein compare
H281DRAFT_00728 +0.8 2.1 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_01101 +0.8 1.0 Small-conductance mechanosensitive channel compare
H281DRAFT_02349 +0.7 3.3 general secretion pathway protein J compare
H281DRAFT_01224 +0.7 1.3 Predicted metal-dependent hydrolase, TIM-barrel fold compare
H281DRAFT_05248 +0.7 1.1 hypothetical protein compare
H281DRAFT_05695 +0.7 2.0 hypothetical protein compare
H281DRAFT_03154 +0.7 1.1 two-component system, NarL family, sensor kinase compare
H281DRAFT_00563 +0.7 1.6 microcin C transport system ATP-binding protein compare
H281DRAFT_04993 +0.7 1.4 hypothetical protein compare
H281DRAFT_00972 +0.7 1.5 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_01457 +0.7 1.6 hypothetical protein compare
H281DRAFT_05482 +0.7 2.1 hypothetical protein compare
H281DRAFT_02791 +0.7 0.9 apolipoprotein D and lipocalin family protein compare
H281DRAFT_00653 +0.7 1.4 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_05350 +0.7 2.6 Signal transduction histidine kinase compare
H281DRAFT_01750 +0.7 2.9 PAS domain S-box-containing protein compare
H281DRAFT_04779 +0.7 2.3 colanic acid biosynthesis glycosyl transferase WcaI compare
H281DRAFT_03346 +0.7 1.1 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_06511 +0.7 0.9 reactive intermediate/imine deaminase compare
H281DRAFT_03240 +0.7 2.7 pyruvate dehydrogenase (quinone) compare
H281DRAFT_04996 +0.7 1.1 type III secretion protein C compare
H281DRAFT_02736 +0.7 1.7 uncharacterized peroxidase-related enzyme compare
H281DRAFT_03144 +0.7 1.9 putative phosphoesterase compare
H281DRAFT_05060 +0.7 1.7 Permeases of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06510 +0.7 2.1 methyl-accepting chemotaxis protein compare
H281DRAFT_03484 +0.7 3.1 osmoprotectant transport system permease protein compare
H281DRAFT_05502 +0.7 1.3 transketolase subunit B compare
H281DRAFT_06376 +0.7 1.4 transcriptional regulator, LysR family compare
H281DRAFT_05809 +0.7 3.3 Uncharacterized membrane protein compare
H281DRAFT_05754 +0.7 2.6 flagellar biosynthesis protein FlhF compare
H281DRAFT_05123 +0.7 1.1 hypothetical protein compare
H281DRAFT_04880 +0.7 1.1 PRC-barrel domain-containing protein compare
H281DRAFT_01668 +0.7 1.5 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_02166 +0.7 2.5 High potential iron-sulfur protein compare
H281DRAFT_04424 +0.7 1.6 hypothetical protein compare
H281DRAFT_05619 +0.7 3.8 putative transposase compare
H281DRAFT_05191 +0.7 3.4 Tetratricopeptide repeat-containing protein compare
H281DRAFT_00843 +0.7 1.6 lipoprotein NlpD compare
H281DRAFT_03066 +0.7 2.3 transcriptional regulator, LysR family compare
H281DRAFT_05705 +0.7 1.1 hypothetical protein compare
H281DRAFT_05753 +0.7 2.9 flagellar biosynthesis protein FlhA compare
H281DRAFT_04002 +0.7 1.0 tRNA_Arg_ACG compare
H281DRAFT_02936 +0.7 1.8 nitrilase compare
H281DRAFT_02332 +0.7 2.3 L-arabinose-binding protein compare
H281DRAFT_00130 +0.7 1.4 Predicted secreted protein compare
H281DRAFT_01885 +0.7 1.8 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_02753 +0.7 1.4 Predicted dehydrogenase compare
H281DRAFT_05438 +0.7 0.7 transcriptional regulator, IclR family compare
H281DRAFT_03502 +0.7 0.8 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_02245 +0.7 3.2 transcriptional regulator, LysR family compare
H281DRAFT_03695 +0.7 3.0 glutathione S-transferase compare
H281DRAFT_00930 +0.7 2.8 phosphinothricin acetyltransferase compare
H281DRAFT_00776 +0.7 1.4 hypothetical protein compare
H281DRAFT_03403 +0.7 2.6 Predicted ATPase compare
H281DRAFT_04594 +0.6 1.7 putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data) compare
H281DRAFT_03196 +0.6 3.0 Acyl-CoA dehydrogenase compare
H281DRAFT_01450 +0.6 1.7 transcriptional regulator, LacI family compare
H281DRAFT_00644 +0.6 2.3 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
H281DRAFT_05986 +0.6 1.5 transcriptional regulator, TetR family compare
H281DRAFT_03023 +0.6 0.7 Protein of unknown function (DUF2866) compare
H281DRAFT_06070 +0.6 1.6 FimV C-terminal domain-containing protein compare
H281DRAFT_00379 +0.6 0.7 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_00970 +0.6 2.6 putative Mg2+ transporter-C (MgtC) family protein compare
H281DRAFT_04213 +0.6 2.2 hypothetical protein compare
H281DRAFT_04787 +0.6 0.9 polysaccharide transporter, PST family compare
H281DRAFT_02375 +0.6 2.4 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family compare
H281DRAFT_03572 +0.6 1.6 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_06108 +0.6 2.7 hypothetical protein compare
H281DRAFT_03351 +0.6 1.6 transcriptional regulator, IclR family compare
H281DRAFT_04704 +0.6 1.7 Deoxyadenosine/deoxycytidine kinase compare
H281DRAFT_04427 +0.6 2.3 hypothetical protein compare
H281DRAFT_06445 +0.6 0.9 Molybdopterin synthase catalytic subunit compare
H281DRAFT_03733 +0.6 0.9 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01100 +0.6 1.2 hypothetical protein compare
H281DRAFT_05949 +0.6 1.1 gluconolactonase compare
H281DRAFT_04792 +0.6 1.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00896 +0.6 1.0 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_03131 +0.6 2.6 proton-dependent oligopeptide transporter, POT family compare
H281DRAFT_04008 +0.6 2.0 RNAse PH compare
H281DRAFT_04869 +0.6 1.2 imidazolonepropionase compare
H281DRAFT_03159 +0.6 0.7 hypothetical protein compare
H281DRAFT_00946 +0.6 1.6 protein-tyrosine phosphatase compare
H281DRAFT_02346 +0.6 1.2 general secretion pathway protein M compare
H281DRAFT_00254 +0.6 4.0 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_06477 +0.6 1.4 transcriptional regulator, AraC family compare
H281DRAFT_04446 +0.6 3.1 transcriptional regulator, LysR family compare
H281DRAFT_05763 +0.6 3.2 flagellar basal-body rod protein FlgC compare
H281DRAFT_02503 +0.6 1.3 Peroxiredoxin compare
H281DRAFT_06249 +0.6 2.8 glutamate N-acetyltransferase compare
H281DRAFT_04946 +0.6 1.9 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_04657 +0.6 1.7 hypothetical protein compare
H281DRAFT_02149 +0.6 2.6 Osmotically-inducible protein OsmY, contains BON domain compare
H281DRAFT_06405 +0.6 1.8 beta-lactamase class A compare
H281DRAFT_05956 +0.6 1.5 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_04924 +0.6 2.3 iron complex outermembrane recepter protein compare
H281DRAFT_02354 +0.6 3.5 general secretion pathway protein F compare
H281DRAFT_03036 +0.6 1.3 hypothetical protein compare
H281DRAFT_02054 +0.6 3.7 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_06529 +0.6 1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_03409 +0.6 0.8 Protein of unknown function (DUF3072) compare
H281DRAFT_04619 +0.6 3.7 Uncharacterized membrane protein compare
H281DRAFT_01377 +0.6 0.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 2'-Deoxyinosine in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2'-Deoxyinosine across organisms