Experiment set4IT081 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Nalidixic acid sodium salt 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.8 -2.6 peroxidase compare
AO353_17300 -3.6 -5.9 antibiotic transporter compare
AO353_17295 -3.4 -15.6 multidrug transporter compare
AO353_05130 -3.1 -2.1 anti-anti-sigma factor compare
AO353_17290 -3.1 -5.5 multidrug transporter compare
AO353_05145 -3.0 -4.6 ABC transporter permease compare
AO353_12115 -2.9 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03590 -2.9 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_25550 -2.8 -6.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_16805 -2.8 -5.2 recombinase RecA compare
AO353_03580 -2.7 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_20185 -2.7 -5.4 DNA-binding protein compare
AO353_00330 -2.7 -8.3 hypothetical protein compare
AO353_14775 -2.6 -5.5 hypothetical protein compare
AO353_05135 -2.5 -8.1 toluene tolerance protein compare
AO353_06040 -2.4 -3.9 exodeoxyribonuclease V subunit alpha compare
AO353_06415 -2.3 -4.6 hypothetical protein compare
AO353_06585 -2.3 -6.6 hypothetical protein compare
AO353_12105 -2.2 -6.3 peptidase S41 compare
AO353_06045 -2.2 -6.3 exodeoxyribonuclease V subunit beta compare
AO353_05150 -2.2 -3.9 ABC transporter ATP-binding protein compare
AO353_03585 -2.2 -3.5 ATP-dependent DNA helicase RuvA compare
AO353_14590 -2.2 -2.5 serine kinase/phosphatase compare
AO353_03615 -2.1 -2.5 cold-shock protein compare
AO353_04365 -2.1 -5.6 recombinase XerD compare
AO353_05140 -2.0 -7.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_09240 -2.0 -3.0 acetylglutamate kinase compare
AO353_16810 -2.0 -3.6 recombinase RecX compare
AO353_10055 -2.0 -10.6 DNA helicase II compare
AO353_09320 -2.0 -8.8 ATP-dependent DNA helicase RecG compare
AO353_16915 -1.9 -9.5 hypothetical protein compare
AO353_07355 -1.9 -5.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_26045 -1.9 -2.7 hypothetical protein compare
AO353_27650 -1.9 -4.0 cell division protein FtsK compare
AO353_15935 -1.9 -7.2 exodeoxyribonuclease conserved
AO353_09905 -1.9 -8.3 phosphate-binding protein compare
AO353_09050 -1.9 -4.0 recombinase XerC compare
AO353_00825 -1.8 -4.0 porin compare
AO353_08165 -1.8 -3.0 pyrroline-5-carboxylate reductase compare
AO353_00430 -1.7 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_18890 -1.7 -4.5 cytochrome C compare
AO353_10950 -1.7 -7.9 thiol:disulfide interchange protein compare
AO353_27155 -1.6 -2.9 hypothetical protein compare
AO353_13100 -1.6 -2.1 GTPase RsgA compare
AO353_18540 -1.6 -3.1 pseudouridine synthase compare
AO353_06050 -1.6 -5.3 exodeoxyribonuclease V subunit gamma compare
AO353_12915 -1.6 -6.8 carbamoyltransferase compare
AO353_08685 -1.6 -6.7 N-acetylglutamate synthase compare
AO353_10930 -1.6 -6.6 DNA polymerase I compare
AO353_00635 -1.5 -3.1 hypothetical protein compare
AO353_07155 -1.5 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_09250 -1.5 -2.8 exodeoxyribonuclease III compare
AO353_21425 -1.5 -3.5 hypothetical protein compare
AO353_02190 -1.5 -9.2 hypothetical protein compare
AO353_01220 -1.5 -2.3 hypothetical protein compare
AO353_12945 -1.5 -6.8 toluene tolerance protein compare
AO353_09000 -1.5 -4.7 argininosuccinate lyase compare
AO353_18170 -1.5 -5.9 aspartyl beta-hydroxylase compare
AO353_23410 -1.5 -1.9 hypothetical protein compare
AO353_04190 -1.4 -2.2 glycerol-3-phosphate dehydrogenase compare
AO353_12650 -1.4 -1.5 hypothetical protein compare
AO353_02975 -1.4 -3.1 aspartate kinase compare
AO353_26835 -1.4 -3.0 transcriptional regulator compare
AO353_09560 -1.4 -2.0 type VI secretion protein compare
AO353_21750 -1.4 -2.7 peptidylprolyl isomerase compare
AO353_02940 -1.4 -3.0 DNA-binding protein compare
AO353_27435 -1.4 -1.9 hypothetical protein compare
AO353_24260 -1.4 -2.1 hypothetical protein compare
AO353_00495 -1.4 -1.9 DNA topoisomerase I compare
AO353_03275 -1.3 -1.9 LysR family transcriptional regulator compare
AO353_26080 -1.3 -2.8 hypothetical protein compare
AO353_02440 -1.3 -7.8 peptidase S41 compare
AO353_04175 -1.3 -4.0 glycerol uptake facilitator GlpF compare
AO353_00760 -1.3 -2.3 hypothetical protein compare
AO353_20800 -1.3 -1.6 hypothetical protein compare
AO353_23590 -1.3 -1.7 ArsR family transcriptional regulator compare
AO353_12580 -1.3 -2.1 type II secretory protein PulK compare
AO353_21625 -1.3 -2.1 Fe/S biogenesis protein NfuA compare
AO353_09315 -1.2 -6.7 LysR family transcriptional regulator compare
AO353_27710 -1.2 -2.0 DNA repair protein compare
AO353_15905 -1.2 -4.9 outer membrane protein assembly factor BamB compare
AO353_08880 -1.2 -2.3 exopolyphosphatase compare
AO353_12500 -1.2 -1.9 shikimate kinase compare
AO353_09040 -1.2 -1.9 diaminopimelate epimerase compare
AO353_20170 -1.2 -3.7 trigger factor compare
AO353_16940 -1.2 -4.2 deoxycytidine triphosphate deaminase compare
AO353_02280 -1.2 -1.2 DNA mismatch repair protein MutS compare
AO353_09890 -1.1 -3.4 phosphate ABC transporter ATP-binding protein compare
AO353_17160 -1.1 -2.2 aspartate-semialdehyde dehydrogenase compare
AO353_15445 -1.1 -2.7 disulfide bond formation protein B compare
AO353_22920 -1.1 -3.8 GntR family transcriptional regulator compare
AO353_08115 -1.1 -4.5 energy transducer TonB compare
AO353_14495 -1.1 -6.6 acetolactate synthase 3 catalytic subunit compare
AO353_04565 -1.1 -4.1 nucleoid-associated protein compare
AO353_02250 -1.1 -2.1 chorismate synthase compare
AO353_07645 -1.1 -1.3 sarcosine oxidase subunit gamma compare
AO353_05240 -1.1 -2.5 rod shape-determining protein MreD compare
AO353_12930 -1.1 -2.5 GlcNAc-PI de-N-acetylase compare
AO353_18500 -1.0 -2.2 chemotaxis protein CheY compare
AO353_03715 -1.0 -1.7 H-NS histone compare
AO353_13225 -1.0 -2.5 50S ribosomal protein L9 compare
AO353_15885 -1.0 -3.4 Cro/Cl family transcriptional regulator compare
AO353_23945 -1.0 -2.1 hypothetical protein compare
AO353_25990 -1.0 -4.1 aspartyl beta-hydroxylase compare
AO353_03760 -1.0 -3.0 pilus assembly protein PilZ compare
AO353_22215 -1.0 -2.3 hypothetical protein compare
AO353_11165 -1.0 -5.8 hypothetical protein compare
AO353_06495 -1.0 -3.4 gamma-glutamyl phosphate reductase compare
AO353_10445 -1.0 -1.3 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_26070 -1.0 -1.9 hypothetical protein compare
AO353_15185 -1.0 -3.2 ATPase compare
AO353_07325 -1.0 -1.6 diadenosine tetraphosphatase compare
AO353_14220 -1.0 -1.1 ribosomal large subunit pseudouridine synthase D compare
AO353_15465 -1.0 -3.8 cytochrome C oxidase compare
AO353_18780 -1.0 -4.2 cobyrinic acid a,c-diamide synthase compare
AO353_23495 -1.0 -2.0 SAM-dependent methyltransferase compare
AO353_04360 -1.0 -4.8 protein-disulfide isomerase compare
AO353_18555 -1.0 -6.8 aromatic amino acid transporter compare
AO353_21430 -1.0 -2.0 hypothetical protein compare
AO353_01215 -1.0 -5.6 hypothetical protein compare
AO353_26390 -1.0 -1.4 glyoxalase compare
AO353_07315 -1.0 -2.0 rRNA methyltransferase compare
AO353_12110 -1.0 -4.6 peptidase M23 compare
AO353_09900 -0.9 -6.0 phosphate ABC transporter permease compare
AO353_15250 -0.9 -2.2 cytochrome B compare
AO353_23790 -0.9 -1.6 metal-binding protein compare
AO353_01190 -0.9 -1.1 hypothetical protein compare
AO353_02300 -0.9 -1.6 MarR family transcriptional regulator compare
AO353_17035 -0.9 -3.1 hypothetical protein compare
AO353_00515 -0.9 -1.9 hypothetical protein compare
AO353_13155 -0.9 -2.3 hypothetical protein compare
AO353_15490 -0.9 -1.4 hypothetical protein compare
AO353_20565 -0.9 -1.5 tRNA-Ala compare
AO353_14485 -0.9 -0.6 pseudouridine synthase compare
AO353_13980 -0.9 -3.7 DNA repair protein RadA compare
AO353_18630 -0.8 -4.6 beta-ketoacyl-ACP synthase compare
AO353_15410 -0.8 -1.3 hypothetical protein compare
AO353_14990 -0.8 -1.3 hypothetical protein compare
AO353_12880 -0.8 -1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_03360 -0.8 -4.2 glucose-6-phosphate dehydrogenase compare
AO353_15725 -0.8 -2.6 hypothetical protein compare
AO353_03100 -0.8 -1.5 XRE family transcriptional regulator compare
AO353_04105 -0.8 -4.1 argininosuccinate synthase compare
AO353_18505 -0.8 -1.4 translation initiation factor 2 compare
AO353_00185 -0.8 -0.9 phage tail protein compare
AO353_23405 -0.8 -1.6 hypothetical protein compare
AO353_10435 -0.8 -4.8 chromosome partitioning protein compare
AO353_17165 -0.8 -1.9 ATP-dependent helicase compare
AO353_26055 -0.8 -1.1 hypothetical protein compare
AO353_24130 -0.8 -1.8 hypothetical protein compare
AO353_21640 -0.8 -1.1 cobalt transporter compare
AO353_23315 -0.8 -2.3 hypothetical protein compare
AO353_13040 -0.8 -4.0 esterase compare
AO353_27380 -0.8 -1.5 pyocin R2, holin compare
AO353_20175 -0.8 -2.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_12935 -0.8 -2.3 glycosyltransferase compare
AO353_10495 -0.8 -2.0 serine hydroxymethyltransferase compare
AO353_22220 -0.8 -1.9 copper resistance protein CopC compare
AO353_12470 -0.8 -6.0 peptidase compare
AO353_14475 -0.8 -6.1 penicillin-binding protein 1B compare
AO353_16605 -0.8 -5.4 protein-L-isoaspartate O-methyltransferase compare
AO353_19180 -0.8 -2.3 GAF domain-containing protein compare
AO353_26995 -0.8 -2.6 hypothetical protein compare
AO353_27185 -0.8 -2.4 hypothetical protein compare
AO353_25530 -0.8 -2.6 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_07270 -0.7 -2.0 transcriptional regulator compare
AO353_20625 -0.7 -2.3 3-isopropylmalate dehydratase compare
AO353_13685 -0.7 -2.5 3-dehydroquinate dehydratase compare
AO353_17675 -0.7 -2.9 hypothetical protein compare
AO353_22035 -0.7 -2.3 pyridoxine 5'-phosphate oxidase compare
AO353_05005 -0.7 -2.6 hypothetical protein compare
AO353_16425 -0.7 -1.5 Fe-S metabolism protein SufE compare
AO353_17885 -0.7 -1.0 hypothetical protein compare
AO353_08015 -0.7 -3.5 5,10-methylenetetrahydrofolate reductase compare
AO353_26235 -0.7 -2.6 hypothetical protein compare
AO353_04055 -0.7 -1.2 methionine--tRNA ligase compare
AO353_03605 -0.7 -0.7 FmdB family transcriptional regulator compare
AO353_15900 -0.7 -1.3 GTP-binding protein compare
AO353_18285 -0.7 -1.9 3-phosphoglycerate kinase compare
AO353_21935 -0.7 -1.4 nitrite reductase compare
AO353_05420 -0.7 -1.0 peptide chain release factor 3 compare
AO353_26945 -0.7 -1.1 transcriptional regulator compare
AO353_09895 -0.7 -3.6 phosphate ABC transporter permease compare
AO353_17560 -0.7 -4.5 uracil-DNA glycosylase compare
AO353_18765 -0.7 -1.7 hypothetical protein compare
AO353_10805 -0.7 -2.0 hypothetical protein compare
AO353_06865 -0.7 -5.3 catalase compare
AO353_12625 -0.7 -2.2 hypothetical protein compare
AO353_09265 -0.7 -1.5 hypothetical protein compare
AO353_04520 -0.7 -2.7 elongation factor 4 compare
AO353_03710 -0.7 -1.3 formyltetrahydrofolate deformylase compare
AO353_01160 -0.7 -3.1 acetyl-CoA acetyltransferase compare
AO353_02060 -0.7 -1.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_09275 -0.7 -1.7 DNA-directed RNA polymerase subunit omega compare
AO353_25815 -0.7 -2.1 hypothetical protein compare
AO353_27090 -0.7 -0.9 hypothetical protein compare
AO353_06750 -0.7 -1.4 methionine ABC transporter ATP-binding protein compare
AO353_19145 -0.7 -2.4 protease HtpX compare
AO353_29160 -0.7 -1.9 GTP pyrophosphokinase compare
AO353_10670 -0.7 -3.2 shikimate dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas fluorescens FW300-N2E3

For stress Nalidixic acid sodium salt across organisms