Experiment set4IT081 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Nalidixic acid sodium salt 0.004 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO353_17305 +1.6 7.1 TetR family transcriptional regulator compare
AO353_18435 +1.2 6.7 MarR family transcriptional regulator compare
AO353_12690 +1.2 1.7 acyl carrier protein compare
AO353_01015 +1.2 1.9 hypothetical protein compare
AO353_17935 +1.1 3.5 hypothetical protein compare
AO353_10730 +1.0 1.9 hypothetical protein compare
AO353_23910 +1.0 2.7 response regulator compare
AO353_26830 +1.0 3.8 histidine kinase compare
AO353_24685 +0.9 2.4 hypothetical protein compare
AO353_07140 +0.9 7.7 peptidase M23 compare
AO353_01485 +0.9 4.5 ABC transporter compare
AO353_11455 +0.9 1.8 hypothetical protein compare
AO353_00455 +0.9 1.9 beta-hexosaminidase compare
AO353_24830 +0.9 3.1 enoyl-CoA hydratase compare
AO353_09460 +0.9 2.7 hypothetical protein compare
AO353_02600 +0.9 2.4 alpha-ribazole phosphatase compare
AO353_23785 +0.8 1.7 hypothetical protein compare
AO353_00345 +0.8 4.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_26115 +0.8 1.7 hypothetical protein compare
AO353_07145 +0.8 6.3 anhydro-N-acetylmuramic acid kinase compare
AO353_02040 +0.8 2.0 integration host factor subunit beta compare
AO353_08470 +0.8 3.4 RNA pyrophosphohydrolase compare
AO353_07610 +0.8 1.4 hypothetical protein compare
AO353_23485 +0.8 4.8 lytic transglycosylase compare
AO353_05675 +0.8 4.3 protein RnfH compare
AO353_00905 +0.8 1.9 GntR family transcriptional regulator compare
AO353_05195 +0.8 5.6 glmZ(sRNA)-inactivating NTPase compare
AO353_16530 +0.8 1.4 ribonuclease HII compare
AO353_27430 +0.8 2.5 hypothetical protein compare
AO353_12455 +0.8 2.6 nuclease compare
AO353_07250 +0.7 1.7 polyamine ABC transporter permease compare
AO353_26285 +0.7 1.6 hypothetical protein compare
AO353_19085 +0.7 2.0 organic hydroperoxide resistance protein compare
AO353_00120 +0.7 1.5 DNA-binding protein compare
AO353_16925 +0.7 6.4 AmpG family muropeptide MFS transporter compare
AO353_09440 +0.7 1.8 type VI secretion protein compare
AO353_03115 +0.7 2.8 TetR family transcriptional regulator compare
AO353_11945 +0.7 1.2 4-oxalocrotonate tautomerase compare
AO353_24850 +0.7 3.0 aspartate aminotransferase compare
AO353_06710 +0.7 1.4 riboflavin synthase subunit alpha compare
AO353_06720 +0.7 1.5 NrdR family transcriptional regulator compare
AO353_23140 +0.7 2.4 aspartate dehydrogenase compare
AO353_13395 +0.7 1.5 protein hupE compare
AO353_28565 +0.7 1.9 hypothetical protein compare
AO353_01135 +0.7 1.9 enoyl-CoA hydratase compare
AO353_19750 +0.7 1.4 diaminopimelate epimerase compare
AO353_08525 +0.7 2.5 purine nucleoside phosphorylase compare
AO353_10455 +0.7 1.3 tRNA modification GTPase MnmE compare
AO353_24745 +0.7 1.6 hypothetical protein compare
AO353_00975 +0.7 2.2 hypothetical protein compare
AO353_14945 +0.7 2.2 hypothetical protein compare
AO353_03135 +0.7 2.4 hypothetical protein compare
AO353_02175 +0.7 1.6 carbon storage regulator compare
AO353_04220 +0.7 2.4 chemotaxis protein CheY compare
AO353_28075 +0.7 3.1 hypothetical protein compare
AO353_29215 +0.7 1.5 alpha/beta hydrolase compare
AO353_26865 +0.7 1.8 transcriptional regulator compare
AO353_25585 +0.7 1.1 argininosuccinate lyase compare
AO353_16440 +0.6 1.5 ArsC family transcriptional regulator compare
AO353_25060 +0.6 3.1 LysR family transcriptional regulator compare
AO353_27925 +0.6 1.1 hypothetical protein compare
AO353_14150 +0.6 1.2 peptidylprolyl isomerase compare
AO353_02650 +0.6 2.9 SAM-dependent methyltransferase compare
AO353_00165 +0.6 3.2 lysis protein compare
AO353_17020 +0.6 4.4 ATP-dependent DNA helicase DinG compare
AO353_16040 +0.6 1.7 hypothetical protein compare
AO353_23385 +0.6 3.6 trans-2-enoyl-CoA reductase compare
AO353_20865 +0.6 1.6 cold-shock protein compare
AO353_14735 +0.6 2.5 hypothetical protein compare
AO353_26670 +0.6 2.5 ArsR family transcriptional regulator compare
AO353_12085 +0.6 3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_23275 +0.6 3.0 lysine transporter LysE compare
AO353_07295 +0.6 5.2 aminoglycoside phosphotransferase compare
AO353_12135 +0.6 2.4 rRNA methylase compare
AO353_02920 +0.6 2.3 serine recombinase compare
AO353_25575 +0.6 2.0 GNAT family acetyltransferase compare
AO353_01480 +0.6 3.9 hypothetical protein compare
AO353_05055 +0.6 3.4 peptidylprolyl isomerase compare
AO353_02465 +0.6 0.9 hypothetical protein compare
AO353_29270 +0.6 1.9 type VI secretion system protein compare
AO353_04325 +0.6 1.3 hypothetical protein compare
AO353_00490 +0.6 1.6 PasA protein compare
AO353_25940 +0.6 2.5 hypothetical protein compare
AO353_20495 +0.6 1.3 NUDIX hydrolase compare
AO353_23930 +0.6 2.4 chemotaxis protein CheY compare
AO353_21630 +0.6 1.2 precorrin-4 C11-methyltransferase compare
AO353_22985 +0.6 1.7 hypothetical protein compare
AO353_28700 +0.6 1.6 hypothetical protein compare
AO353_09785 +0.6 1.7 hypothetical protein compare
AO353_00115 +0.6 1.0 hypothetical protein compare
AO353_19435 +0.6 1.6 TetR family transcriptional regulator compare
AO353_08160 +0.6 3.7 hypothetical protein compare
AO353_16655 +0.6 2.2 phage baseplate protein compare
AO353_10210 +0.6 3.3 hypothetical protein compare
AO353_09775 +0.6 2.1 hypothetical protein compare
AO353_22950 +0.6 1.9 universal stress protein UspA compare
AO353_12710 +0.6 1.2 thioredoxin compare
AO353_19565 +0.6 1.7 vanillate O-demethylase oxidoreductase VanB compare
AO353_09115 +0.6 3.3 diguanylate cyclase compare
AO353_14585 +0.6 2.7 ribosomal-protein-alanine acetyltransferase compare
AO353_06125 +0.6 1.8 ArsR family transcriptional regulator compare
AO353_20680 +0.6 1.9 cell division protein compare
AO353_23885 +0.6 2.8 AraC family transcriptional regulator compare
AO353_17750 +0.6 1.3 transcriptional regulator compare
AO353_22705 +0.6 2.0 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_12045 +0.6 2.6 iron transporter compare
AO353_04930 +0.5 1.6 flavodoxin compare
AO353_21665 +0.5 1.9 magnesium chelatase compare
AO353_08465 +0.5 4.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_19205 +0.5 1.7 hypothetical protein compare
AO353_04580 +0.5 2.0 GIY-YIG nuclease compare
AO353_02025 +0.5 3.9 mannose-1-phosphate guanyltransferase compare
AO353_17005 +0.5 1.5 hypothetical protein compare
AO353_08855 +0.5 2.3 GntR family transcriptional regulator compare
AO353_29025 +0.5 2.2 LysR family transcriptional regulator compare
AO353_03450 +0.5 2.4 heme oxygenase compare
AO353_20070 +0.5 3.4 hypothetical protein compare
AO353_28210 +0.5 1.6 2-haloalkanoic acid dehalogenase compare
AO353_06795 +0.5 1.0 Isochorismatase compare
AO353_04185 +0.5 2.3 DeoR family transcriptional regulator compare
AO353_08110 +0.5 2.7 glutathione synthetase compare
AO353_01805 +0.5 2.7 hypothetical protein compare
AO353_12145 +0.5 2.1 nitrogen regulation protein NR(I) compare
AO353_03130 +0.5 1.4 hypothetical protein compare
AO353_17540 +0.5 1.4 helicase compare
AO353_26620 +0.5 1.7 ArsR family transcriptional regulator compare
AO353_21110 +0.5 1.1 hypothetical protein compare
AO353_24705 +0.5 1.6 hemolysin D compare
AO353_16355 +0.5 2.2 TetR family transcriptional regulator compare
AO353_22305 +0.5 1.3 LysR family transcriptional regulator compare
AO353_14970 +0.5 1.4 hypothetical protein compare
AO353_15785 +0.5 3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_18495 +0.5 2.7 LTXXQ domain protein compare
AO353_11750 +0.5 1.2 ATPase compare
AO353_08775 +0.5 1.1 cell division protein ZapA compare
AO353_17985 +0.5 2.3 LysR family transcriptional regulator compare
AO353_13925 +0.5 0.9 XRE family transcriptional regulator compare
AO353_05280 +0.5 1.4 4-carboxymuconolactone decarboxylase compare
AO353_23620 +0.5 1.3 hypothetical protein compare
AO353_22930 +0.5 1.4 hypothetical protein compare
AO353_10200 +0.5 2.1 lysine transporter LysE compare
AO353_22660 +0.5 2.4 hypothetical protein compare
AO353_24025 +0.5 2.8 ABC transporter ATP-binding protein compare
AO353_12240 +0.5 2.3 histidine utilization repressor compare
AO353_04480 +0.5 1.5 NGG1p interacting factor NIF3 compare
AO353_28405 +0.5 2.0 hypothetical protein compare
AO353_01075 +0.5 1.8 hypothetical protein compare
AO353_01045 +0.5 1.5 phasin compare
AO353_02775 +0.5 2.2 3-methyladenine DNA glycosylase compare
AO353_20115 +0.5 1.8 LysR family transcriptional regulator compare
AO353_22375 +0.5 1.6 cytochrome c-550 PedF compare
AO353_02660 +0.5 2.1 peptidase P60 compare
AO353_07920 +0.5 1.9 hypothetical protein compare
AO353_27855 +0.5 0.8 MarR family transcriptional regulator compare
AO353_05425 +0.5 1.9 glycine/betaine ABC transporter permease compare
AO353_22600 +0.5 1.1 hypothetical protein compare
AO353_26400 +0.5 1.6 hypothetical protein compare
AO353_23490 +0.5 3.1 hydroxyacylglutathione hydrolase compare
AO353_26550 +0.5 0.9 hypothetical protein compare
AO353_09745 +0.5 0.9 hypothetical protein compare
AO353_16885 +0.5 2.3 hypothetical protein compare
AO353_27620 +0.5 3.2 glutathionyl-hydroquinone reductase YqjG compare
AO353_12030 +0.5 1.1 hypothetical protein compare
AO353_00505 +0.5 1.7 3-ketoacyl-CoA thiolase compare
AO353_16635 +0.5 1.9 pyocin R2, holin compare
AO353_21030 +0.5 1.9 hypothetical protein compare
AO353_05880 +0.5 1.3 plasmid stabilization protein compare
AO353_21950 +0.5 2.2 AsnC family transcriptional regulator compare
AO353_22500 +0.5 0.7 hypothetical protein compare
AO353_23005 +0.5 1.5 hypothetical protein compare
AO353_19825 +0.5 2.9 shikimate dehydrogenase compare
AO353_03840 +0.5 1.0 ABC transporter ATP-binding protein compare
AO353_24400 +0.5 1.9 ACP phosphodiesterase compare
AO353_26990 +0.5 1.0 hypothetical protein compare
AO353_01345 +0.5 3.5 aminodeoxychorismate lyase compare
AO353_16155 +0.5 1.1 antibiotic biosynthesis monooxygenase compare
AO353_28435 +0.5 1.6 AraC family transcriptional regulator compare
AO353_17590 +0.4 2.4 transcriptional regulator compare
AO353_06525 +0.4 1.1 dehydratase compare
AO353_00620 +0.4 1.0 cytochrome C oxidase Cbb3 compare
AO353_02655 +0.4 2.5 peptidase P60 compare
AO353_07415 +0.4 2.1 AsnC family transcriptional regulator compare
AO353_01270 +0.4 1.4 2-dehydro-3-deoxygalactonokinase compare
AO353_07290 +0.4 2.8 mannose-1-phosphate guanylyltransferase compare
AO353_20415 +0.4 1.6 hypothetical protein compare
AO353_28815 +0.4 1.2 hypothetical protein compare
AO353_14385 +0.4 2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_27935 +0.4 1.4 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_10120 +0.4 2.7 N-acetylmuramoyl-L-alanine amidase compare
AO353_17360 +0.4 2.2 amidase compare
AO353_15480 +0.4 0.8 hypothetical protein compare
AO353_18485 +0.4 1.7 nitroreductase compare
AO353_26845 +0.4 3.0 acriflavine resistance protein B compare
AO353_12070 +0.4 2.7 imidazoleglycerol-phosphate dehydratase compare
AO353_19115 +0.4 2.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_25870 +0.4 1.1 peptide ABC transporter ATP-binding protein compare
AO353_28160 +0.4 2.2 amidohydrolase compare
AO353_02085 +0.4 2.0 methylthioribose-1-phosphate isomerase compare
AO353_23835 +0.4 1.3 hypothetical protein compare
AO353_13130 +0.4 1.4 N-acetylmuramoyl-L-alanine amidase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Nalidixic acid sodium salt in Pseudomonas fluorescens FW300-N2E3

For stress Nalidixic acid sodium salt across organisms