Experiment set4IT081 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_411_MOI_rep2

200 most important genes:

  gene name fitness t score description  
CSW01_00380 -5.5 -2.1 hypothetical protein compare
CSW01_03215 -4.8 -17.0 ABC transporter ATP-binding protein compare
CSW01_17750 -4.7 -1.0 cytochrome B compare
CSW01_05265 -4.5 -1.7 methionine--tRNA ligase compare
CSW01_03210 -4.4 -18.7 iron ABC transporter permease compare
CSW01_00450 -4.3 -1.9 SCP2 domain-containing protein compare
CSW01_17275 -4.3 -0.9 large conductance mechanosensitive channel protein MscL compare
CSW01_01485 -4.2 -2.9 transcriptional regulator compare
CSW01_18685 -4.2 -0.9 heme utilization cystosolic carrier protein HutX compare
CSW01_13285 -4.0 -2.7 ribulose-phosphate 3-epimerase compare
CSW01_11560 -3.9 -2.7 riboflavin biosynthesis protein RibD compare
CSW01_09720 -3.8 -1.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_03205 -3.8 -9.2 iron ABC transporter substrate-binding protein compare
CSW01_12365 -3.8 -3.7 inorganic phosphate transporter compare
CSW01_12005 -3.6 -2.5 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_11730 -3.6 -3.2 2-dehydropantoate 2-reductase compare
CSW01_06325 -3.4 -1.5 hypothetical protein compare
CSW01_11555 -3.4 -5.6 riboflavin synthase compare
CSW01_06380 -3.3 -2.3 GTP cyclohydrolase II compare
CSW01_09525 -3.3 -1.7 DNA translocase FtsK compare
CSW01_06825 -3.2 -2.0 acylphosphatase compare
CSW01_00560 -2.9 -8.7 DNA polymerase I compare
CSW01_05575 -2.9 -2.0 phosphate acetyltransferase compare
CSW01_05275 -2.9 -1.2 hypothetical protein compare
CSW01_10280 -2.8 -5.6 heme exporter protein C compare
CSW01_13805 -2.8 -5.8 Hsp33 family molecular chaperone HslO compare
CSW01_14055 -2.8 -6.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_11670 -2.8 -2.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_18350 -2.8 -1.8 cell division protein DedD compare
CSW01_00015 -2.8 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_12320 -2.8 -5.0 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_14085 -2.8 -3.3 transcriptional regulator compare
CSW01_18010 -2.7 -2.7 cytochrome C554 compare
CSW01_04820 -2.6 -9.0 serine hydroxymethyltransferase compare
CSW01_18635 -2.6 -5.3 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_12885 -2.5 -7.2 fructose 1,6-bisphosphatase compare
CSW01_13635 -2.5 -10.2 thiol:disulfide interchange protein DsbD compare
CSW01_05815 -2.5 -1.3 glutaredoxin compare
CSW01_10285 -2.4 -2.9 heme exporter protein CcmB compare
CSW01_03410 -2.4 -3.2 polyribonucleotide nucleotidyltransferase compare
CSW01_13450 -2.4 -3.4 EF-P beta-lysylation protein EpmB compare
CSW01_07435 -2.3 -1.9 hypothetical protein compare
CSW01_12200 -2.3 -2.8 ribosomal RNA small subunit methyltransferase H compare
CSW01_03980 -2.2 -7.3 IMP dehydrogenase compare
CSW01_05065 -2.2 -6.5 N-acetylglucosamine repressor compare
CSW01_00500 -2.2 -12.1 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_02875 -2.1 -6.0 DNA recombination/repair protein RecA compare
CSW01_03695 -2.1 -5.2 ribosomal large subunit pseudouridine synthase D compare
CSW01_14625 -2.1 -1.7 hypothetical protein compare
CSW01_03055 -2.1 -2.1 cytochrome c1 compare
CSW01_15425 -2.1 -1.0 DUF3265 domain-containing protein compare
CSW01_00470 -2.0 -4.0 twin-arginine translocase subunit TatC compare
CSW01_18560 -2.0 -1.0 hypothetical protein compare
CSW01_01125 -2.0 -7.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_12255 -1.9 -2.7 flavodoxin FldB compare
CSW01_10270 -1.9 -3.8 cytochrome c-type biogenesis protein CcmE compare
CSW01_00170 -1.9 -4.0 thiol:disulfide interchange protein DsbA compare
CSW01_00095 -1.9 -2.5 hypothetical protein compare
CSW01_05730 -1.9 -10.0 inosine/guanosine kinase compare
CSW01_05580 -1.8 -5.7 acetate kinase compare
CSW01_17885 -1.8 -1.9 hypothetical protein compare
CSW01_17325 -1.8 -5.4 transaldolase compare
CSW01_07500 -1.8 -1.0 DUF2835 domain-containing protein compare
CSW01_13810 -1.8 -5.8 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_11220 -1.8 -3.3 flagellar basal body rod protein FlgC compare
CSW01_02230 -1.8 -4.7 ribonuclease E inhibitor RraB compare
CSW01_11780 -1.8 -3.7 exodeoxyribonuclease V subunit beta compare
CSW01_08350 -1.8 -3.0 DUF1289 domain-containing protein compare
CSW01_06235 -1.8 -2.0 hypothetical protein compare
CSW01_02970 -1.8 -6.4 glutamate--cysteine ligase compare
CSW01_05225 -1.8 -2.1 molybdopterin synthase sulfur carrier subunit compare
CSW01_15810 -1.7 -2.0 hypothetical protein compare
CSW01_10560 -1.7 -3.9 chorismate synthase compare
CSW01_10340 -1.7 -2.0 MinD/ParA family protein compare
CSW01_16990 -1.7 -1.2 hypothetical protein compare
CSW01_07475 -1.7 -1.0 glutaredoxin family protein compare
CSW01_10035 -1.7 -1.3 YnhF family membrane protein compare
CSW01_09035 -1.7 -3.7 IclR family transcriptional regulator compare
CSW01_18150 -1.7 -0.8 transcription initiation factor TFIIIB compare
CSW01_02490 -1.6 -5.5 glutathione synthetase compare
CSW01_14080 -1.6 -0.8 DUF3283 domain-containing protein compare
CSW01_11785 -1.6 -2.4 exonuclease V subunit gamma compare
CSW01_12130 -1.6 -1.8 DUF721 domain-containing protein compare
CSW01_05825 -1.6 -4.8 transcriptional regulator HexR compare
CSW01_02020 -1.6 -1.9 phosphoadenosine phosphosulfate reductase compare
CSW01_10290 -1.6 -3.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_03785 -1.5 -3.0 phosphate ABC transporter permease compare
CSW01_06195 -1.5 -2.4 hypothetical protein compare
CSW01_19125 -1.5 -1.7 branched-chain amino acid ABC transporter compare
CSW01_03325 -1.5 -2.9 porin compare
CSW01_10875 -1.5 -4.4 redox-regulated ATPase YchF compare
CSW01_07440 -1.5 -1.8 DUF3634 domain-containing protein compare
CSW01_11225 -1.5 -5.1 flagellar basal body rod protein FlgB compare
CSW01_11145 -1.5 -2.8 hypothetical protein compare
CSW01_00460 -1.5 -2.5 twin-arginine translocase subunit TatA compare
CSW01_03795 -1.5 -1.3 phosphate ABC transporter ATP-binding protein compare
CSW01_12680 -1.4 -4.9 cytosol aminopeptidase compare
CSW01_06875 -1.4 -3.3 7-cyano-7-deazaguanine synthase QueC compare
CSW01_11920 -1.4 -5.1 NupC/NupG family nucleoside CNT transporter compare
CSW01_09040 -1.4 -2.4 primosomal protein compare
CSW01_01875 -1.4 -2.1 hypothetical protein compare
CSW01_10265 -1.4 -3.8 c-type cytochrome biogenesis protein CcmF compare
CSW01_00710 -1.4 -2.2 DUF4145 domain-containing protein compare
CSW01_10260 -1.4 -2.4 thiol:disulfide interchange protein DsbE compare
CSW01_14925 -1.4 -2.2 hypothetical protein compare
CSW01_07130 -1.4 -1.0 hypothetical protein compare
CSW01_07920 -1.4 -1.6 lipid A modification system glycine carrier protein AlmF compare
CSW01_11215 -1.4 -3.0 flagellar hook assembly protein FlgD compare
CSW01_12735 -1.4 -2.8 RidA family protein compare
CSW01_01820 -1.3 -3.9 N-acetylmuramoyl-L-alanine amidase compare
CSW01_01515 -1.3 -2.4 type II 3-dehydroquinate dehydratase compare
CSW01_09625 -1.3 -1.6 hypothetical protein compare
CSW01_07750 -1.3 -0.7 hypothetical protein compare
CSW01_16835 -1.3 -2.6 catabolite repressor/activator compare
CSW01_02530 -1.3 -4.0 D-erythrose-4-phosphate dehydrogenase compare
CSW01_03075 -1.3 -1.6 phosphoheptose isomerase compare
CSW01_09465 -1.3 -3.6 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_00190 -1.3 -2.5 DUF1040 domain-containing protein compare
CSW01_12880 -1.3 -2.5 hypothetical protein compare
CSW01_17595 -1.3 -0.8 TIGR02808 family protein compare
CSW01_01490 -1.3 -1.5 Fis family transcriptional regulator compare
CSW01_05230 -1.3 -2.5 molybdopterin synthase catalytic subunit compare
CSW01_02755 -1.3 -1.2 glutamyl-tRNA amidotransferase compare
CSW01_08630 -1.2 -3.0 condensin subunit F compare
CSW01_06645 -1.2 -2.5 response regulator compare
CSW01_05915 -1.2 -2.4 thymidine kinase compare
CSW01_15180 -1.2 -1.3 3-keto-L-gulonate-6-phosphate decarboxylase compare
CSW01_18870 -1.2 -1.4 transcriptional regulator compare
CSW01_14780 -1.2 -2.0 cation:proton antiporter compare
CSW01_11190 -1.2 -4.3 flagellar P-ring protein compare
CSW01_08700 -1.2 -2.3 DUF2498 domain-containing protein compare
CSW01_09920 -1.2 -1.3 chromosome partitioning protein ParA compare
CSW01_04495 -1.2 -1.3 hypothetical protein compare
CSW01_00065 -1.2 -3.5 DNA replication and repair protein RecF compare
CSW01_06385 -1.2 -4.9 peptidase compare
CSW01_13670 -1.2 -0.8 DNA-directed RNA polymerase subunit omega compare
CSW01_01860 -1.2 -2.3 SlyX protein compare
CSW01_10245 -1.1 -2.4 ABC transporter compare
CSW01_14910 -1.1 -1.0 cold-shock protein compare
CSW01_05490 -1.1 -3.6 L-threonylcarbamoyladenylate synthase compare
CSW01_18730 -1.1 -0.8 DUF406 domain-containing protein compare
CSW01_09815 -1.1 -2.2 TetR/AcrR family transcriptional regulator compare
CSW01_10590 -1.1 -1.1 flagellar biosynthetic protein FliQ compare
CSW01_06335 -1.1 -2.8 (2Fe-2S)-binding protein compare
CSW01_02455 -1.1 -3.8 YggS family pyridoxal phosphate enzyme compare
CSW01_03030 -1.1 -5.1 cell division protein ZapE compare
CSW01_08370 -1.1 -2.7 ABC transporter ATP-binding protein compare
CSW01_16030 -1.1 -1.6 DUF3709 domain-containing protein compare
CSW01_15825 -1.1 -2.2 hypothetical protein compare
CSW01_10655 -1.1 -1.6 flagellar hook-basal body complex protein FliE compare
CSW01_14605 -1.1 -3.1 type VI secretion system-associated protein TagO compare
CSW01_05125 -1.1 -1.3 ribonuclease T compare
CSW01_01915 -1.1 -3.0 bacterioferritin-associated ferredoxin compare
CSW01_02380 -1.1 -1.4 tRNA-Asn compare
CSW01_10255 -1.1 -0.9 cytochrome c-type biogenesis protein CcmH compare
CSW01_01330 -1.1 -1.4 oxidoreductase compare
CSW01_11535 -1.1 -2.7 thiamine-phosphate kinase compare
CSW01_12250 -1.1 -3.6 site-specific tyrosine recombinase XerD compare
CSW01_13445 -1.0 -1.0 elongation factor P compare
CSW01_14770 -1.0 -2.1 sodium:proton antiporter compare
CSW01_12665 -1.0 -1.8 RDD family protein compare
CSW01_15205 -1.0 -2.6 HTH-type transcriptional regulator UlaR compare
CSW01_04285 -1.0 -1.3 toxin coregulated pilus biosynthesis protein R compare
CSW01_05195 -1.0 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
CSW01_08775 -1.0 -3.5 hypothetical protein compare
CSW01_00650 -1.0 -4.3 tyrosine recombinase XerC compare
CSW01_10190 -1.0 -2.1 nucleoid-associated protein compare
CSW01_11125 -1.0 -2.1 hypothetical protein compare
CSW01_16130 -1.0 -0.6 acetyltransferase compare
CSW01_18525 -1.0 -1.0 integrase compare
CSW01_15480 -1.0 -1.1 DUF645 domain-containing protein compare
CSW01_11200 -1.0 -3.5 flagellar basal-body rod protein FlgG compare
CSW01_07890 -1.0 -1.5 hypothetical protein compare
CSW01_09215 -1.0 -2.0 tol-pal system-associated acyl-CoA thioesterase compare
CSW01_17200 -1.0 -1.1 DUF333 domain-containing protein compare
CSW01_17495 -1.0 -2.9 glycerol-3-phosphate dehydrogenase compare
CSW01_10375 -1.0 -1.7 HIT family protein compare
CSW01_06280 -1.0 -2.1 succinylglutamate desuccinylase compare
CSW01_10415 -1.0 -2.6 succinate--CoA ligase subunit alpha compare
CSW01_08935 -1.0 -1.3 N-acetylmannosamine-6-phosphate 2-epimerase compare
CSW01_14100 -1.0 -1.5 hypothetical protein compare
CSW01_11565 -1.0 -0.7 transcriptional regulator NrdR compare
CSW01_10020 -0.9 -5.3 ROK family protein compare
CSW01_00615 -0.9 -1.3 hypothetical protein compare
CSW01_09075 -0.9 -3.9 hypothetical protein compare
CSW01_06395 -0.9 -3.7 iron-regulated protein A compare
CSW01_11115 -0.9 -1.1 hypothetical protein compare
CSW01_10485 -0.9 -0.7 DUF2788 domain-containing protein compare
CSW01_08670 -0.9 -2.2 TVP38/TMEM64 family protein compare
CSW01_11420 -0.9 -1.5 cytochrome C biogenesis protein CcsB compare
CSW01_10405 -0.9 -3.4 Mn2+/Zn2+ABC transporter ATP-binding protein compare
CSW01_15420 -0.9 -2.3 glyoxalase compare
CSW01_08625 -0.9 -2.1 chromosome partition protein MukE compare
CSW01_06530 -0.9 -3.3 aromatic amino acid aminotransferase compare
CSW01_16185 -0.9 -1.4 DUF3265 domain-containing protein compare
CSW01_14245 -0.9 -1.5 hypothetical protein compare
CSW01_14335 -0.9 -1.6 ATP-dependent helicase compare
CSW01_18705 -0.9 -2.3 biopolymer transporter exbD1 compare
CSW01_07150 -0.9 -1.3 spermidine/putrescine ABC transporter permease PotC compare
CSW01_16730 -0.9 -2.6 glutathione S-transferase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms