Experiment set4IT081 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate and casamino acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03315 -4.6 -2.7 ferrous iron transport protein A compare
MMP_RS05085 -4.3 -13.8 AAA family ATPase compare
MMP_RS05095 -4.3 -16.1 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS07345 -4.2 -11.8 glycine synthesis protein GlyXL (from data) compare
MMP_RS05080 -4.2 -18.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05100 -4.2 -26.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05090 -4.1 -18.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS06705 -4.1 -8.5 formate/nitrite transporter family protein compare
MMP_RS05055 -4.0 -23.7 DUF166 domain-containing protein compare
MMP_RS06700 -4.0 -16.4 hypothetical protein compare
MMP_RS06355 -4.0 -4.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS05060 -4.0 -18.4 AAA family ATPase compare
MMP_RS05075 -4.0 -22.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS06680 -3.9 -20.1 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS03640 -3.9 -4.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03435 -3.9 -4.0 ketol-acid reductoisomerase compare
MMP_RS04615 -3.9 -6.0 PDGLE domain-containing protein compare
MMP_RS06685 -3.8 -14.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06715 -3.8 -19.3 cache domain-containing protein compare
MMP_RS06315 -3.8 -2.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS03015 -3.8 -13.0 GTP 3' 8-cyclase MoaA compare
MMP_RS04605 -3.8 -8.5 cobalt ECF transporter T component CbiQ compare
MMP_RS02900 -3.8 -1.5 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04620 -3.7 -17.0 cobalt transporter CbiM compare
MMP_RS05515 -3.6 -10.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS05070 -3.6 -11.8 4Fe-4S dicluster domain-containing protein compare
MMP_RS08745 -3.5 -10.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03475 -3.4 -1.3 hypothetical protein compare
MMP_RS06345 -3.4 -15.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06720 -3.4 -8.2 response regulator transcription factor compare
MMP_RS00295 -3.3 -4.8 gamma carbonic anhydrase family protein compare
MMP_RS08720 -3.3 -3.4 4Fe-4S binding protein compare
MMP_RS01020 -3.3 -2.0 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06350 -3.3 -11.9 HesA/MoeB/ThiF family protein compare
MMP_RS07365 -3.3 -15.6 2-phosphoglycerate kinase compare
MMP_RS05500 -3.3 -13.8 2-isopropylmalate synthase compare
MMP_RS03450 -3.3 -5.4 glycine synthesis protein GlyXS (from data) compare
MMP_RS01380 -3.2 -6.9 PHP domain-containing protein compare
MMP_RS01700 -3.2 -2.1 dihydroxy-acid dehydratase compare
MMP_RS08460 -3.2 -4.4 proteasome-activating nucleotidase compare
MMP_RS05065 -3.2 -9.2 CooT family nickel-binding protein compare
MMP_RS07720 -3.1 -19.9 4Fe-4S binding protein compare
MMP_RS01175 -3.1 -5.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01005 -3.1 -2.1 riboflavin synthase compare
MMP_RS08790 -3.0 -4.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS07445 -3.0 -10.0 helix-turn-helix domain-containing protein compare
MMP_RS06730 -2.9 -2.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS07845 -2.9 -4.9 LL-diaminopimelate aminotransferase compare
MMP_RS01325 -2.9 -4.0 dihydroneopterin aldolase family protein compare
MMP_RS05555 -2.9 -2.6 DUF4040 domain-containing protein compare
MMP_RS07730 -2.9 -3.3 pyruvate synthase subunit beta compare
MMP_RS05425 -2.8 -7.5 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07605 -2.8 -6.3 diadenylate cyclase compare
MMP_RS07525 -2.6 -9.8 4Fe-4S binding protein compare
MMP_RS07635 -2.6 -9.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS00290 -2.6 -11.0 hypothetical protein compare
MMP_RS02355 -2.6 -5.0 30S ribosomal protein S27ae compare
MMP_RS06285 -2.6 -3.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06975 -2.6 -3.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS08210 -2.6 -4.1 phosphatidylglycerophosphatase A compare
MMP_RS07005 -2.6 -1.4 4Fe-4S binding protein compare
MMP_RS01545 -2.5 -2.2 CBS domain-containing protein compare
MMP_RS06340 -2.5 -11.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS00300 -2.5 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS01500 -2.4 -4.2 CBS domain-containing protein compare
MMP_RS07630 -2.4 -2.6 ATP-binding cassette domain-containing protein compare
MMP_RS01455 -2.4 -10.1 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS05550 -2.4 -1.3 cation:proton antiporter compare
MMP_RS08635 -2.4 -3.4 UbiA family prenyltransferase compare
MMP_RS05920 -2.4 -1.2 50S ribosomal protein L37e compare
MMP_RS04585 -2.3 -12.3 AIR synthase related protein compare
MMP_RS03035 -2.3 -5.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS05925 -2.3 -5.0 small nuclear ribonucleoprotein compare
MMP_RS01985 -2.3 -6.0 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS02280 -2.3 -1.7 DUF211 domain-containing protein compare
MMP_RS06895 -2.3 -3.9 selenocysteine-specific translation elongation factor compare
MMP_RS06630 -2.2 -2.2 UPF0058 family protein compare
MMP_RS05850 -2.2 -8.6 Ldh family oxidoreductase compare
MMP_RS06930 -2.2 -13.0 MBL fold metallo-hydrolase compare
MMP_RS05265 -2.2 -3.3 2-isopropylmalate synthase compare
MMP_RS07555 -2.2 -1.4 monovalent cation/H+ antiporter subunit E compare
MMP_RS02195 -2.2 -6.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08330 -2.2 -6.6 NADH-quinone oxidoreductase subunit H compare
MMP_RS06295 -2.2 -8.9 methanogenesis marker 14 protein compare
MMP_RS08240 -2.2 -9.9 methanogenesis marker 16 metalloprotein compare
MMP_RS05930 -2.2 -4.3 3-isopropylmalate dehydratase large subunit compare
MMP_RS02800 -2.2 -6.0 nucleotidyltransferase domain-containing protein compare
MMP_RS06400 -2.1 -2.5 4Fe-4S binding protein compare
MMP_RS00685 -2.1 -6.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS00985 -2.1 -7.3 CDC48 family AAA ATPase compare
MMP_RS05505 -2.1 -9.9 class IV adenylate cyclase compare
MMP_RS08645 -2.1 -8.9 UPF0179 family protein compare
MMP_RS00695 -2.1 -1.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07735 -2.1 -1.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS07185 -2.1 -13.2 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS03960 -2.1 -1.6 hypothetical protein compare
MMP_RS06375 -2.1 -8.0 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS00320 -2.1 -3.2 class I SAM-dependent methyltransferase compare
MMP_RS01610 -2.0 -4.0 hypothetical protein compare
MMP_RS04215 -2.0 -10.4 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS07575 -2.0 -5.5 RNA ligase partner protein compare
MMP_RS01830 -2.0 -2.7 tRNA-Val compare
MMP_RS00455 -2.0 -12.2 orotate phosphoribosyltransferase-like protein compare
MMP_RS08165 -2.0 -3.5 phosphoglycerate dehydrogenase compare
MMP_RS06270 -2.0 -8.5 TIGR00300 family protein compare
MMP_RS05765 -1.9 -7.5 M42 family metallopeptidase compare
MMP_RS02875 -1.9 -13.3 chorismate pyruvate-lyase family protein compare
MMP_RS01475 -1.9 -10.4 phosphosulfolactate synthase compare
MMP_RS06105 -1.9 -9.2 hydrogenase maturation peptidase HycI compare
MMP_RS08820 -1.9 -7.2 hypothetical protein compare
MMP_RS06625 -1.9 -1.8 DNA primase compare
MMP_RS06120 -1.9 -3.1 UPF0147 family protein compare
MMP_RS06370 -1.9 -5.9 biotin synthase BioB compare
MMP_RS01265 -1.9 -3.8 hypothetical protein compare
MMP_RS02340 -1.9 -2.9 DNA-directed RNA polymerase subunit E'' compare
MMP_RS04500 -1.9 -14.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS09020 -1.8 -2.3 hypothetical protein compare
MMP_RS07645 -1.8 -6.8 aldehyde dehydrogenase family protein compare
MMP_RS04710 -1.8 -2.4 hypothetical protein compare
MMP_RS06215 -1.8 -5.3 30S ribosomal protein S6e compare
MMP_RS08105 -1.8 -8.1 6-carboxyhexanoate--CoA ligase compare
MMP_RS02170 -1.8 -6.8 CBS domain-containing protein compare
MMP_RS07380 -1.7 -2.4 transcription elongation factor Spt5 compare
MMP_RS03025 -1.7 -5.0 molybdenum cofactor guanylyltransferase compare
MMP_RS03580 -1.7 -4.0 signal recognition particle-docking protein FtsY compare
MMP_RS02010 -1.7 -9.7 PHP domain-containing protein compare
MMP_RS08095 -1.7 -7.2 dethiobiotin synthase compare
MMP_RS07600 -1.7 -3.4 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS08100 -1.6 -10.1 8-amino-7-oxononanoate synthase compare
MMP_RS01220 -1.6 -8.3 hypothetical protein compare
MMP_RS02135 -1.6 -4.3 DUF5612 domain-containing protein compare
MMP_RS03600 -1.6 -3.2 triose-phosphate isomerase compare
MMP_RS04890 -1.6 -1.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01755 -1.6 -2.1 DUF2097 domain-containing protein compare
MMP_RS05540 -1.6 -5.0 hypothetical protein compare
MMP_RS06175 -1.6 -8.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS07545 -1.6 -1.4 HTH domain-containing protein compare
MMP_RS01225 -1.6 -8.2 DUF5379 domain-containing protein compare
MMP_RS07960 -1.5 -8.6 sugar phosphate isomerase/epimerase compare
MMP_RS05430 -1.5 -5.3 TIGR00288 family NYN domain-containing protein compare
MMP_RS03140 -1.5 -10.0 hypothetical protein compare
MMP_RS01980 -1.5 -9.0 trimeric intracellular cation channel family protein compare
MMP_RS03420 -1.5 -2.1 acetolactate synthase small subunit compare
MMP_RS07685 -1.5 -7.3 TIGR01212 family radical SAM protein compare
MMP_RS05875 -1.5 -2.7 hydroxyethylthiazole kinase compare
MMP_RS00620 -1.5 -10.7 4Fe-4S binding protein compare
MMP_RS06925 -1.4 -2.5 ribonuclease VapC4 compare
MMP_RS08435 -1.4 -3.3 Era-like GTP-binding protein compare
MMP_RS06865 -1.4 -2.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00115 -1.4 -9.3 radical SAM protein compare
MMP_RS08715 -1.4 -2.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01795 -1.3 -2.0 methanogenesis marker 6 protein compare
MMP_RS07710 -1.3 -9.1 cell division protein FtsZ compare
MMP_RS03485 -1.3 -7.5 TIGR00267 family protein compare
MMP_RS03400 -1.3 -3.5 archease compare
MMP_RS06230 -1.3 -3.3 helix-turn-helix domain-containing protein compare
MMP_RS01960 -1.3 -0.9 hypothetical protein compare
MMP_RS06395 -1.3 -4.3 ThiF family adenylyltransferase compare
MMP_RS06020 -1.3 -3.9 archaeoflavoprotein AfpA compare
MMP_RS03110 -1.3 -5.3 glycosyltransferase family 2 protein compare
MMP_RS04870 -1.3 -5.7 TIGR02253 family HAD-type hydrolase compare
MMP_RS03305 -1.2 -5.8 winged helix-turn-helix domain-containing protein compare
MMP_RS03145 -1.2 -4.3 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS07700 -1.2 -6.7 DUF1188 domain-containing protein compare
MMP_RS07195 -1.2 -7.1 M20 family metallo-hydrolase compare
MMP_RS00130 -1.2 -1.8 nickel-responsive transcriptional regulator NikR compare
MMP_RS08320 -1.2 -5.1 molybdopterin molybdotransferase MoeA compare
MMP_RS01800 -1.2 -4.0 TIGR00303 family protein compare
MMP_RS01365 -1.2 -3.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS04790 -1.2 -8.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS00515 -1.2 -1.1 DUF655 domain-containing protein compare
MMP_RS07535 -1.2 -6.8 4Fe-4S binding protein compare
MMP_RS06200 -1.1 -7.3 M24 family metallopeptidase compare
MMP_RS02190 -1.1 -3.0 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS02235 -1.1 -7.0 CBS domain-containing protein compare
MMP_RS02145 -1.1 -5.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS04780 -1.1 -3.5 ribonuclease P compare
MMP_RS03155 -1.1 -7.3 precorrin-6A reductase compare
MMP_RS00725 -1.1 -6.0 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS00345 -1.1 -4.3 DUF2666 domain-containing protein compare
MMP_RS07540 -1.1 -4.5 CBS domain-containing protein compare
MMP_RS05285 -1.1 -6.6 MMPL family transporter compare
MMP_RS00305 -1.1 -1.7 phosphoribosyl-ATP diphosphatase compare
MMP_RS05545 -1.1 -4.5 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00720 -1.1 -6.7 metal-dependent hydrolase compare
MMP_RS01720 -1.1 -1.8 replication factor C large subunit compare
MMP_RS08445 -1.1 -2.9 DUF2099 family protein compare
MMP_RS00895 -1.1 -4.4 hypothetical protein compare
MMP_RS02165 -1.1 -5.3 tRNA-dihydrouridine synthase compare
MMP_RS06130 -1.0 -4.3 peptidylprolyl isomerase compare
MMP_RS04850 -1.0 -8.5 UPF0254 family protein compare
MMP_RS08650 -1.0 -2.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS04090 -1.0 -3.5 hypothetical protein compare
MMP_RS00735 -1.0 -4.8 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS00050 -1.0 -5.2 AarF/UbiB family protein compare
MMP_RS06980 -1.0 -4.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS03095 -1.0 -5.3 diphthine synthase compare
MMP_RS02345 -1.0 -2.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06530 -1.0 -4.5 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS07420 -1.0 -3.5 metalloregulator ArsR/SmtB family transcription factor compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Mc_vitamins across organisms