Experiment set4IT081 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxyadenosine 5-monophosphate 2.5 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04390 +2.6 17.3 ATP-binding cassette, subfamily B compare
H281DRAFT_04391 +2.4 16.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_02683 +2.3 3.2 xanthine dehydrogenase accessory factor compare
H281DRAFT_04848 +1.7 6.0 hypothetical protein compare
H281DRAFT_04850 +1.7 5.4 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
H281DRAFT_00885 +1.7 9.1 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_00315 +1.6 5.6 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04270 +1.6 8.3 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_06567 +1.6 1.9 hypothetical protein compare
H281DRAFT_04844 +1.6 11.6 Glycosyltransferase, GT2 family compare
H281DRAFT_01749 +1.6 2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04858 +1.6 2.3 hypothetical protein compare
H281DRAFT_00317 +1.5 7.2 O-antigen ligase compare
H281DRAFT_04849 +1.5 4.6 UDP-glucose 4-epimerase compare
H281DRAFT_03303 +1.4 3.3 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_04781 +1.4 2.2 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_03023 +1.4 1.8 Protein of unknown function (DUF2866) compare
H281DRAFT_04201 +1.4 1.9 O-antigen ligase compare
H281DRAFT_00722 +1.4 2.2 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_06120 +1.3 1.5 hypothetical protein compare
H281DRAFT_02791 +1.3 2.2 apolipoprotein D and lipocalin family protein compare
H281DRAFT_03440 +1.3 1.4 PAP2 superfamily protein compare
H281DRAFT_01436 +1.3 2.0 NTE family protein compare
H281DRAFT_04826 +1.3 4.0 rhamnosyltransferase compare
H281DRAFT_01390 +1.3 2.0 hypothetical protein compare
H281DRAFT_03460 +1.3 1.6 Protein of unknown function (DUF2950) compare
H281DRAFT_00316 +1.3 6.5 ADP-heptose:LPS heptosyltransferase compare
H281DRAFT_02753 +1.2 2.6 Predicted dehydrogenase compare
H281DRAFT_04713 +1.2 6.7 membrane-associated protein compare
H281DRAFT_01184 +1.2 1.4 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03613 +1.2 5.4 hypothetical protein compare
H281DRAFT_05214 +1.2 2.3 transcriptional regulator, LacI family compare
H281DRAFT_00888 +1.2 3.6 phytoene synthase compare
H281DRAFT_04400 +1.2 8.5 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_00487 +1.1 1.6 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_00757 +1.1 1.5 hypothetical protein compare
H281DRAFT_03147 +1.1 1.8 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_04195 +1.1 3.2 heptosyltransferase-2 compare
H281DRAFT_00518 +1.1 1.8 Putative negative regulator of RcsB-dependent stress response compare
H281DRAFT_06286 +1.1 2.1 Thiol-disulfide isomerase or thioredoxin compare
H281DRAFT_05816 +1.1 8.5 soluble lytic murein transglycosylase compare
H281DRAFT_05274 +1.1 1.8 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_03061 +1.1 3.0 hypothetical protein compare
H281DRAFT_05445 +1.1 1.9 protein of unknown function (DUF4440) compare
H281DRAFT_01766 +1.1 1.8 cytochrome c oxidase subunit 2 compare
H281DRAFT_02224 +1.0 1.4 rod shape-determining protein MreC compare
H281DRAFT_00176 +1.0 1.7 outer membrane lipoprotein carrier protein compare
H281DRAFT_04996 +1.0 2.2 type III secretion protein C compare
H281DRAFT_00470 +1.0 6.1 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_03572 +1.0 1.9 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_04601 +1.0 5.5 hypothetical protein compare
H281DRAFT_04220 +1.0 4.3 Cytochrome c, mono- and diheme variants compare
H281DRAFT_02532 +1.0 2.2 Sugar phosphate isomerase/epimerase compare
H281DRAFT_01262 +1.0 2.1 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_03315 +1.0 2.0 HSP20 family protein compare
H281DRAFT_04837 +1.0 7.6 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
H281DRAFT_00345 +1.0 3.2 Transglutaminase-like enzyme, putative cysteine protease compare
H281DRAFT_01474 +1.0 1.6 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_00927 +1.0 4.2 UPF0755 protein compare
H281DRAFT_02864 +1.0 2.1 precorrin-8X methylmutase compare
H281DRAFT_00531 +1.0 2.8 hypothetical protein compare
H281DRAFT_05536 +1.0 3.7 hypothetical protein compare
H281DRAFT_01156 +0.9 2.7 Protein N-acetyltransferase, RimJ/RimL family compare
H281DRAFT_02148 +0.9 2.1 cytochrome c compare
H281DRAFT_03256 +0.9 2.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare
H281DRAFT_00998 +0.9 1.1 outer membrane protein, multidrug efflux system compare
H281DRAFT_05003 +0.9 1.6 type III secretion apparatus lipoprotein, YscJ/HrcJ family compare
H281DRAFT_00285 +0.9 2.3 PhnB protein compare
H281DRAFT_06135 +0.9 1.6 hypothetical protein compare
H281DRAFT_01689 +0.9 2.3 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_05021 +0.9 1.3 Response regulator compare
H281DRAFT_00972 +0.9 1.6 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_05350 +0.9 3.6 Signal transduction histidine kinase compare
H281DRAFT_05248 +0.9 1.4 hypothetical protein compare
H281DRAFT_03634 +0.9 1.5 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit compare
H281DRAFT_04958 +0.9 2.9 glutamate racemase compare
H281DRAFT_01919 +0.9 2.1 Threonine/homoserine/homoserine lactone efflux protein compare
H281DRAFT_06253 +0.9 3.9 cell division protein ZapD compare
H281DRAFT_01001 +0.9 2.0 DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain compare
H281DRAFT_05705 +0.9 2.0 hypothetical protein compare
H281DRAFT_01748 +0.9 3.3 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
H281DRAFT_04851 +0.9 4.2 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC compare
H281DRAFT_01457 +0.9 2.2 hypothetical protein compare
H281DRAFT_00946 +0.9 1.9 protein-tyrosine phosphatase compare
H281DRAFT_05724 +0.9 4.2 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) compare
H281DRAFT_05351 +0.9 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_04880 +0.9 2.0 PRC-barrel domain-containing protein compare
H281DRAFT_00240 +0.8 5.7 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_03609 +0.8 3.7 squalene-associated FAD-dependent desaturase compare
H281DRAFT_04676 +0.8 1.2 hypothetical protein compare
H281DRAFT_01007 +0.8 2.1 hypothetical protein compare
H281DRAFT_06163 +0.8 1.1 hypothetical protein compare
H281DRAFT_03849 +0.8 1.5 protein of unknown function (DUF4863) compare
H281DRAFT_04386 +0.8 2.4 hypothetical protein compare
H281DRAFT_06285 +0.8 0.7 3-dehydroquinate dehydratase compare
H281DRAFT_06272 +0.8 1.2 uncharacterized protein compare
H281DRAFT_05289 +0.8 1.3 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_05881 +0.8 1.6 D-amino-acid dehydrogenase compare
H281DRAFT_04846 +0.8 2.2 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_00140 +0.8 3.4 cobalamin-5'-phosphate synthase compare
H281DRAFT_00102 +0.8 1.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_00236 +0.8 4.1 sigma54 specific transcriptional regulator, Fis family compare
H281DRAFT_04931 +0.8 2.3 Surfactin synthase thioesterase subunit compare
H281DRAFT_04064 +0.8 2.5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_04219 +0.8 4.1 Cytochrome c553 compare
H281DRAFT_01105 +0.8 2.3 transcriptional regulator, AraC family compare
H281DRAFT_05544 +0.8 2.0 NitT/TauT family transport system permease protein compare
H281DRAFT_06287 +0.8 4.0 hypothetical protein compare
H281DRAFT_05438 +0.8 0.7 transcriptional regulator, IclR family compare
H281DRAFT_04924 +0.8 3.1 iron complex outermembrane recepter protein compare
H281DRAFT_04552 +0.8 2.0 acetolactate synthase, small subunit compare
H281DRAFT_06025 +0.8 3.3 chromate transporter compare
H281DRAFT_01838 +0.8 2.2 regulator RcnB of Ni and Co efflux compare
H281DRAFT_01584 +0.8 1.2 enamidase compare
H281DRAFT_01028 +0.8 1.1 peptide/nickel transport system permease protein compare
H281DRAFT_05074 +0.8 1.9 protease I compare
H281DRAFT_04857 +0.8 1.2 hypothetical protein compare
H281DRAFT_03047 +0.8 1.7 protein of unknown function (DUF4148) compare
H281DRAFT_02813 +0.8 1.3 Uncharacterized protein conserved in bacteria compare
H281DRAFT_00523 +0.8 1.3 protease FtsH subunit HflK compare
H281DRAFT_01612 +0.8 3.0 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_00731 +0.8 1.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06003 +0.8 1.8 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_05136 +0.8 2.7 response regulator receiver sensor signal transduction histidine kinase (EC 2.7.13.3) compare
H281DRAFT_03196 +0.7 3.7 Acyl-CoA dehydrogenase compare
H281DRAFT_01923 +0.7 1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) compare
H281DRAFT_02585 +0.7 2.5 FAD/FMN-containing dehydrogenase compare
H281DRAFT_03050 +0.7 1.6 Mannose-6-phosphate isomerase, cupin superfamily compare
H281DRAFT_05809 +0.7 3.2 Uncharacterized membrane protein compare
H281DRAFT_00528 +0.7 2.0 hypothetical protein compare
H281DRAFT_02235 +0.7 4.4 multi-sensor signal transduction histidine kinase compare
H281DRAFT_03426 +0.7 1.9 cytochrome bo3 quinol oxidase subunit 2 (EC 1.10.3.-) compare
H281DRAFT_05376 +0.7 1.8 hypothetical protein compare
H281DRAFT_04051 +0.7 1.9 transcriptional regulator, RpiR family compare
H281DRAFT_01145 +0.7 1.3 hopanoid biosynthesis associated protein HpnK compare
H281DRAFT_04932 +0.7 1.8 MbtH protein compare
H281DRAFT_02651 +0.7 1.1 transcriptional regulator, MerR family compare
H281DRAFT_03036 +0.7 1.7 hypothetical protein compare
H281DRAFT_03101 +0.7 1.8 CBS domain-containing membrane protein compare
H281DRAFT_01072 +0.7 2.4 muconate cycloisomerase (EC 5.5.1.1) compare
H281DRAFT_05225 +0.7 2.5 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_00522 +0.7 2.2 GTP-binding protein HflX compare
H281DRAFT_06419 +0.7 1.0 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_00896 +0.7 1.7 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_00678 +0.7 2.7 hypothetical protein compare
H281DRAFT_01111 +0.7 0.9 transcriptional regulator, DeoR family compare
H281DRAFT_00837 +0.7 1.9 NitT/TauT family transport system ATP-binding protein compare
H281DRAFT_05079 +0.7 1.6 small conductance mechanosensitive channel compare
H281DRAFT_05154 +0.7 2.0 murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66 compare
H281DRAFT_02054 +0.7 4.3 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 compare
H281DRAFT_06510 +0.7 2.1 methyl-accepting chemotaxis protein compare
H281DRAFT_04607 +0.7 1.1 hypothetical protein compare
H281DRAFT_01351 +0.7 1.1 hypothetical protein compare
H281DRAFT_04218 +0.7 1.9 hypothetical protein compare
H281DRAFT_00777 +0.7 1.7 SOS-response transcriptional repressor, LexA compare
H281DRAFT_01091 +0.7 1.9 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_04213 +0.7 1.9 hypothetical protein compare
H281DRAFT_04773 +0.7 1.3 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_01848 +0.7 2.1 hypothetical protein compare
H281DRAFT_00989 +0.7 1.6 glycine betaine/proline transport system substrate-binding protein compare
H281DRAFT_04181 +0.7 3.5 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) compare
H281DRAFT_02644 +0.7 2.8 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase compare
H281DRAFT_02702 +0.7 2.0 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_01141 +0.7 1.9 xanthine dehydrogenase, molybdenum binding subunit apoprotein compare
H281DRAFT_05345 +0.7 1.0 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_01497 +0.7 3.0 Predicted oxidoreductase compare
H281DRAFT_02232 +0.7 2.7 preQ(0) biosynthesis protein QueC compare
H281DRAFT_02170 +0.7 1.7 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_02581 +0.7 1.6 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_01294 +0.7 2.7 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_06295 +0.7 1.4 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_01984 +0.7 4.2 protein SCO1/2 compare
H281DRAFT_06002 +0.7 1.9 NADPH:quinone reductase compare
H281DRAFT_03226 +0.7 0.8 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_06010 +0.6 2.5 hypothetical protein compare
H281DRAFT_01257 +0.6 1.4 Catechol 2,3-dioxygenase compare
H281DRAFT_06576 +0.6 1.2 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_03220 +0.6 1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_01675 +0.6 2.1 PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3) compare
H281DRAFT_05891 +0.6 2.8 carbohydrate ABC transporter membrane protein 1, CUT1 family compare
H281DRAFT_03480 +0.6 2.1 4-hydroxybenzoate polyprenyltransferase compare
H281DRAFT_03695 +0.6 1.9 glutathione S-transferase compare
H281DRAFT_00406 +0.6 1.8 Signal transduction histidine kinase compare
H281DRAFT_03612 +0.6 4.0 phospholipid-binding lipoprotein MlaA compare
H281DRAFT_06281 +0.6 3.2 MJ0042 family finger-like domain-containing protein compare
H281DRAFT_02736 +0.6 1.6 uncharacterized peroxidase-related enzyme compare
H281DRAFT_00039 +0.6 2.0 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
H281DRAFT_05619 +0.6 3.5 putative transposase compare
H281DRAFT_01701 +0.6 1.2 hypothetical protein compare
H281DRAFT_03437 +0.6 0.8 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_03409 +0.6 0.9 Protein of unknown function (DUF3072) compare
H281DRAFT_02866 +0.6 2.1 precorrin-3 methyltransferase (EC 2.1.1.131) compare
H281DRAFT_01988 +0.6 3.2 Cytochrome oxidase assembly protein ShyY1 compare
H281DRAFT_03232 +0.6 2.2 carbohydrate ABC transporter membrane protein 2, CUT1 family compare
H281DRAFT_02936 +0.6 2.4 nitrilase compare
H281DRAFT_05342 +0.6 1.2 drug resistance transporter, EmrB/QacA subfamily compare
H281DRAFT_00291 +0.6 1.1 Cytochrome c553 compare
H281DRAFT_00355 +0.6 2.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
H281DRAFT_03611 +0.6 0.8 hopanoid-associated phosphorylase compare
H281DRAFT_02588 +0.6 2.8 PRC-barrel domain-containing protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 2-Deoxyadenosine 5-monophosphate in Paraburkholderia bryophila 376MFSha3.1

For carbon source 2-Deoxyadenosine 5-monophosphate across organisms