Experiment set4IT080 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.6 -4.8 peroxidase compare
AO353_05625 -2.8 -2.7 transcription elongation factor GreA compare
AO353_09000 -2.5 -5.6 argininosuccinate lyase compare
AO353_18540 -2.3 -3.4 pseudouridine synthase compare
AO353_07355 -2.2 -5.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_12115 -2.2 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_00825 -2.2 -4.4 porin compare
AO353_21625 -2.1 -3.1 Fe/S biogenesis protein NfuA compare
AO353_13100 -2.1 -2.4 GTPase RsgA compare
AO353_06040 -2.1 -4.2 exodeoxyribonuclease V subunit alpha compare
AO353_05690 -2.0 -4.0 SsrA-binding protein compare
AO353_12500 -2.0 -2.3 shikimate kinase compare
AO353_06850 -1.9 -4.7 MFS transporter compare
AO353_01410 -1.9 -3.6 ribonuclease E compare
AO353_00430 -1.8 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_09890 -1.8 -4.8 phosphate ABC transporter ATP-binding protein compare
AO353_01915 -1.8 -1.6 GlcG protein compare
AO353_11770 -1.8 -2.1 molecular chaperone Hsp33 compare
AO353_03585 -1.7 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_03580 -1.7 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_04520 -1.7 -5.6 elongation factor 4 compare
AO353_16940 -1.6 -5.6 deoxycytidine triphosphate deaminase compare
AO353_23590 -1.6 -1.9 ArsR family transcriptional regulator compare
AO353_10930 -1.6 -7.3 DNA polymerase I compare
AO353_02250 -1.6 -2.9 chorismate synthase compare
AO353_07155 -1.6 -5.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_07315 -1.5 -3.1 rRNA methyltransferase compare
AO353_10670 -1.5 -6.3 shikimate dehydrogenase compare
AO353_09250 -1.5 -2.9 exodeoxyribonuclease III compare
AO353_04565 -1.5 -5.3 nucleoid-associated protein compare
AO353_04175 -1.5 -4.7 glycerol uptake facilitator GlpF compare
AO353_09905 -1.5 -7.6 phosphate-binding protein compare
AO353_07075 -1.5 -4.9 elongation factor Tu compare
AO353_06045 -1.5 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_14495 -1.5 -8.4 acetolactate synthase 3 catalytic subunit compare
AO353_16805 -1.5 -5.2 recombinase RecA compare
AO353_04190 -1.5 -2.4 glycerol-3-phosphate dehydrogenase compare
AO353_09240 -1.4 -3.0 acetylglutamate kinase compare
AO353_02000 -1.4 -2.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_03615 -1.4 -2.8 cold-shock protein compare
AO353_00650 -1.4 -2.1 cytochrome biogenesis protein compare
AO353_28425 -1.4 -3.5 TetR family transcriptional regulator compare
AO353_04355 -1.4 -2.0 homoserine dehydrogenase compare
AO353_11920 -1.4 -2.8 hypothetical protein compare
AO353_06050 -1.4 -5.4 exodeoxyribonuclease V subunit gamma compare
AO353_02885 -1.4 -2.8 flagellar biosynthesis protein FlgN compare
AO353_08685 -1.4 -6.4 N-acetylglutamate synthase compare
AO353_20565 -1.3 -2.3 tRNA-Ala compare
AO353_10445 -1.3 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_12930 -1.3 -3.0 GlcNAc-PI de-N-acetylase compare
AO353_04365 -1.3 -4.3 recombinase XerD compare
AO353_13225 -1.3 -2.9 50S ribosomal protein L9 compare
AO353_15250 -1.3 -3.2 cytochrome B compare
AO353_24130 -1.3 -2.3 hypothetical protein compare
AO353_09235 -1.3 -5.7 phosphoglucomutase compare
AO353_11730 -1.2 -6.9 glutamate--cysteine ligase compare
AO353_02020 -1.2 -3.9 hypothetical protein compare
AO353_03670 -1.2 -4.1 ornithine acetyltransferase compare
AO353_06495 -1.2 -4.1 gamma-glutamyl phosphate reductase compare
AO353_18780 -1.2 -5.0 cobyrinic acid a,c-diamide synthase compare
AO353_06720 -1.2 -2.0 NrdR family transcriptional regulator compare
AO353_27720 -1.2 -4.0 cupin compare
AO353_28815 -1.2 -2.3 hypothetical protein compare
AO353_02070 -1.1 -5.1 prephenate dehydratase compare
AO353_03590 -1.1 -3.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_07250 -1.1 -2.3 polyamine ABC transporter permease compare
AO353_10085 -1.1 -2.9 pyridoxamine kinase compare
AO353_09040 -1.1 -2.0 diaminopimelate epimerase compare
AO353_12650 -1.1 -1.4 hypothetical protein compare
AO353_14740 -1.1 -2.8 GTP-binding protein compare
AO353_05150 -1.1 -3.5 ABC transporter ATP-binding protein compare
AO353_12090 -1.1 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20585 -1.1 -2.7 TetR family transcriptional regulator compare
AO353_17640 -1.1 -2.1 serine peptidase compare
AO353_08165 -1.1 -2.5 pyrroline-5-carboxylate reductase compare
AO353_08115 -1.1 -4.6 energy transducer TonB compare
AO353_01685 -1.1 -1.6 hypothetical protein compare
AO353_10055 -1.1 -7.2 DNA helicase II compare
AO353_23495 -1.0 -1.4 SAM-dependent methyltransferase compare
AO353_15185 -1.0 -3.4 ATPase compare
AO353_25450 -1.0 -2.3 cyanate hydratase compare
AO353_13200 -1.0 -6.4 exoribonuclease R compare
AO353_07325 -1.0 -1.7 diadenosine tetraphosphatase compare
AO353_13715 -1.0 -2.6 translation initiation factor Sui1 compare
AO353_03710 -1.0 -1.7 formyltetrahydrofolate deformylase compare
AO353_20185 -1.0 -4.1 DNA-binding protein compare
AO353_20270 -1.0 -2.7 spore coat protein compare
AO353_18120 -1.0 -1.6 hypothetical protein compare
AO353_28555 -1.0 -2.0 LysR family transcriptional regulator compare
AO353_09900 -1.0 -6.4 phosphate ABC transporter permease compare
AO353_12105 -1.0 -4.4 peptidase S41 compare
AO353_03420 -1.0 -3.1 phosphogluconate dehydratase compare
AO353_02005 -0.9 -1.0 hypothetical protein compare
AO353_19090 -0.9 -1.5 MarR family transcriptional regulator compare
AO353_09315 -0.9 -5.8 LysR family transcriptional regulator compare
AO353_08130 -0.9 -1.9 uracil phosphoribosyltransferase compare
AO353_20170 -0.9 -3.2 trigger factor compare
AO353_18285 -0.9 -2.1 3-phosphoglycerate kinase compare
AO353_03795 -0.9 -2.7 fumarate hydratase compare
AO353_09560 -0.9 -0.9 type VI secretion protein compare
AO353_00635 -0.9 -2.2 hypothetical protein compare
AO353_10510 -0.9 -1.3 benzoate transporter compare
AO353_00590 -0.9 -3.5 cytochrome C oxidase Cbb3 compare
AO353_15410 -0.9 -1.6 hypothetical protein compare
AO353_26900 -0.9 -3.2 glycerate kinase compare
AO353_25815 -0.9 -2.3 hypothetical protein compare
AO353_22920 -0.8 -3.3 GntR family transcriptional regulator compare
AO353_01975 -0.8 -4.3 glycosyl transferase compare
AO353_00515 -0.8 -1.8 hypothetical protein compare
AO353_13140 -0.8 -3.1 tRNA dimethylallyltransferase compare
AO353_12625 -0.8 -2.5 hypothetical protein compare
AO353_18560 -0.8 -1.4 class I peptide chain release factor compare
AO353_17540 -0.8 -2.1 helicase compare
AO353_12935 -0.8 -2.4 glycosyltransferase compare
AO353_14420 -0.8 -2.5 molecular chaperone DnaK compare
AO353_08110 -0.8 -3.5 glutathione synthetase compare
AO353_00495 -0.8 -1.3 DNA topoisomerase I compare
AO353_13925 -0.8 -1.4 XRE family transcriptional regulator compare
AO353_22215 -0.8 -2.3 hypothetical protein compare
AO353_04500 -0.8 -1.5 DNA repair protein RecO compare
AO353_19505 -0.8 -2.3 FAD-dependent oxidoreductase compare
AO353_08645 -0.8 -2.0 transporter compare
AO353_14485 -0.8 -1.3 pseudouridine synthase compare
AO353_02280 -0.8 -1.2 DNA mismatch repair protein MutS compare
AO353_27650 -0.8 -2.6 cell division protein FtsK compare
AO353_00330 -0.8 -4.2 hypothetical protein compare
AO353_10495 -0.8 -2.0 serine hydroxymethyltransferase compare
AO353_26620 -0.8 -2.1 ArsR family transcriptional regulator compare
AO353_02010 -0.7 -3.5 glycosyl transferase family 1 compare
AO353_03595 -0.7 -2.4 hypothetical protein compare
AO353_22530 -0.7 -2.4 hypothetical protein compare
AO353_05145 -0.7 -3.2 ABC transporter permease compare
AO353_01970 -0.7 -4.8 hypothetical protein compare
AO353_07465 -0.7 -1.9 addiction module toxin RelE compare
AO353_02710 -0.7 -5.0 (p)ppGpp synthetase compare
AO353_05125 -0.7 -2.8 BolA family transcriptional regulator compare
AO353_03360 -0.7 -3.9 glucose-6-phosphate dehydrogenase compare
AO353_13070 -0.7 -3.8 phosphoserine phosphatase compare
AO353_04105 -0.7 -4.0 argininosuccinate synthase compare
AO353_00695 -0.7 -4.3 diguanylate cyclase compare
AO353_00310 -0.7 -4.3 transaldolase compare
AO353_26165 -0.7 -1.9 hypothetical protein compare
AO353_05550 -0.7 -3.4 pseudouridine synthase compare
AO353_23410 -0.7 -1.1 hypothetical protein compare
AO353_14500 -0.7 -3.3 acetolactate synthase 3 regulatory subunit compare
AO353_07790 -0.7 -2.3 ABC transporter for Carnitine, ATPase component (from data) compare
AO353_04810 -0.7 -0.8 hypothetical protein compare
AO353_09320 -0.7 -4.4 ATP-dependent DNA helicase RecG compare
AO353_12130 -0.7 -2.9 preprotein translocase subunit SecB compare
AO353_13155 -0.7 -2.2 hypothetical protein compare
AO353_00460 -0.7 -1.7 TetR family transcriptional regulator compare
AO353_09135 -0.7 -1.5 cytochrome C compare
AO353_09050 -0.7 -2.2 recombinase XerC compare
AO353_10890 -0.7 -2.9 methionine ABC transporter ATP-binding protein compare
AO353_18890 -0.7 -2.6 cytochrome C compare
AO353_14395 -0.7 -2.1 poly(A) polymerase compare
AO353_27135 -0.7 -2.2 hypothetical protein compare
AO353_09060 -0.7 -1.4 hypothetical protein compare
AO353_23465 -0.7 -3.7 ABC transporter permease compare
AO353_22700 -0.7 -1.5 LexA family transcriptional regulator compare
AO353_21430 -0.7 -2.0 hypothetical protein compare
AO353_28165 -0.7 -2.3 ABC transporter substrate-binding protein compare
AO353_18375 -0.7 -3.4 hypothetical protein compare
AO353_11165 -0.7 -4.4 hypothetical protein compare
AO353_10950 -0.7 -4.3 thiol:disulfide interchange protein compare
AO353_09260 -0.7 -3.3 ribonuclease PH compare
AO353_08015 -0.7 -3.5 5,10-methylenetetrahydrofolate reductase compare
AO353_13670 -0.7 -2.4 ribosomal protein L11 methyltransferase compare
AO353_14940 -0.7 -1.7 malate:quinone oxidoreductase compare
AO353_05135 -0.7 -3.8 toluene tolerance protein compare
AO353_17035 -0.7 -2.6 hypothetical protein compare
AO353_18425 -0.7 -2.3 hypothetical protein compare
AO353_06415 -0.7 -2.1 hypothetical protein compare
AO353_29020 -0.7 -2.4 amidohydrolase compare
AO353_16375 -0.7 -1.6 hypothetical protein compare
AO353_14400 -0.6 -2.2 Fis family transcriptional regulator compare
AO353_09440 -0.6 -1.0 type VI secretion protein compare
AO353_05420 -0.6 -1.2 peptide chain release factor 3 compare
AO353_11185 -0.6 -4.7 channel protein TolC compare
AO353_01435 -0.6 -2.2 protein tyrosine phosphatase compare
AO353_21750 -0.6 -1.5 peptidylprolyl isomerase compare
AO353_09895 -0.6 -3.3 phosphate ABC transporter permease compare
AO353_22955 -0.6 -1.7 tRNA hydroxylase compare
AO353_23860 -0.6 -1.5 xanthine permease XanP compare
AO353_24135 -0.6 -2.0 hypothetical protein compare
AO353_05140 -0.6 -3.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_03545 -0.6 -3.6 hypothetical protein compare
AO353_11850 -0.6 -2.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_01355 -0.6 -3.3 3-oxoacyl-ACP synthase compare
AO353_07895 -0.6 -1.5 fructose-bisphosphate aldolase compare
AO353_11915 -0.6 -3.4 agmatine deiminase compare
AO353_24030 -0.6 -3.9 ABC transporter ATP-binding protein compare
AO353_10440 -0.6 -2.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_19685 -0.6 -1.4 alkylhydroperoxidase compare
AO353_11190 -0.6 -4.5 ABC transporter compare
AO353_27695 -0.6 -3.2 isocitrate dehydrogenase compare
AO353_02620 -0.6 -2.6 threonine-phosphate decarboxylase compare
AO353_23955 -0.6 -1.8 RND transporter compare
AO353_08245 -0.6 -1.8 cell division ATP-binding protein FtsE compare
AO353_02810 -0.6 -3.2 histidine kinase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in lb experiments