Experiment set4IT080 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP3_phage_411_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_00380 -5.4 -2.2 hypothetical protein compare
CSW01_18150 -4.3 -1.0 transcription initiation factor TFIIIB compare
CSW01_16130 -4.2 -1.0 acetyltransferase compare
CSW01_03210 -4.1 -15.6 iron ABC transporter permease compare
CSW01_01485 -4.1 -2.8 transcriptional regulator compare
CSW01_18350 -4.0 -1.9 cell division protein DedD compare
CSW01_03205 -3.9 -10.9 iron ABC transporter substrate-binding protein compare
CSW01_11560 -3.8 -2.6 riboflavin biosynthesis protein RibD compare
CSW01_13445 -3.8 -3.0 elongation factor P compare
CSW01_12365 -3.8 -2.6 inorganic phosphate transporter compare
CSW01_13285 -3.8 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_03215 -3.7 -15.3 ABC transporter ATP-binding protein compare
CSW01_09720 -3.7 -1.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_00450 -3.6 -2.4 SCP2 domain-containing protein compare
CSW01_12005 -3.5 -2.4 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_05275 -3.4 -1.1 hypothetical protein compare
CSW01_11220 -3.4 -5.1 flagellar basal body rod protein FlgC compare
CSW01_00015 -3.4 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_01875 -3.3 -4.1 hypothetical protein compare
CSW01_12320 -3.2 -4.4 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_06380 -3.2 -2.2 GTP cyclohydrolase II compare
CSW01_14055 -3.2 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_11555 -3.2 -5.3 riboflavin synthase compare
CSW01_09525 -3.1 -1.8 DNA translocase FtsK compare
CSW01_13305 -3.1 -2.6 shikimate kinase compare
CSW01_05125 -3.0 -2.0 ribonuclease T compare
CSW01_10290 -3.0 -5.4 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_10255 -3.0 -2.1 cytochrome c-type biogenesis protein CcmH compare
CSW01_18635 -2.9 -7.1 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_00560 -2.9 -6.3 DNA polymerase I compare
CSW01_05265 -2.8 -1.6 methionine--tRNA ligase compare
CSW01_04820 -2.8 -10.8 serine hydroxymethyltransferase compare
CSW01_11880 -2.8 -1.9 hypothetical protein compare
CSW01_16590 -2.7 -1.1 N-acetyltransferase compare
CSW01_13450 -2.7 -4.4 EF-P beta-lysylation protein EpmB compare
CSW01_13805 -2.7 -6.4 Hsp33 family molecular chaperone HslO compare
CSW01_05575 -2.5 -3.4 phosphate acetyltransferase compare
CSW01_12885 -2.5 -7.1 fructose 1,6-bisphosphatase compare
CSW01_11780 -2.4 -3.6 exodeoxyribonuclease V subunit beta compare
CSW01_10260 -2.3 -3.1 thiol:disulfide interchange protein DsbE compare
CSW01_01490 -2.3 -4.1 Fis family transcriptional regulator compare
CSW01_03980 -2.2 -7.6 IMP dehydrogenase compare
CSW01_14085 -2.2 -3.3 transcriptional regulator compare
CSW01_08520 -2.2 -1.8 hypothetical protein compare
CSW01_11535 -2.2 -5.2 thiamine-phosphate kinase compare
CSW01_11785 -2.1 -3.2 exonuclease V subunit gamma compare
CSW01_12680 -2.1 -7.6 cytosol aminopeptidase compare
CSW01_02490 -2.0 -6.7 glutathione synthetase compare
CSW01_00095 -2.0 -2.6 hypothetical protein compare
CSW01_13635 -2.0 -9.3 thiol:disulfide interchange protein DsbD compare
CSW01_17745 -2.0 -2.8 diacylglycerol kinase compare
CSW01_01125 -1.9 -6.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_10265 -1.9 -4.8 c-type cytochrome biogenesis protein CcmF compare
CSW01_03795 -1.9 -1.6 phosphate ABC transporter ATP-binding protein compare
CSW01_05580 -1.9 -5.9 acetate kinase compare
CSW01_07500 -1.9 -1.0 DUF2835 domain-containing protein compare
CSW01_10270 -1.9 -2.7 cytochrome c-type biogenesis protein CcmE compare
CSW01_15705 -1.8 -2.0 DUF3265 domain-containing protein compare
CSW01_10875 -1.8 -5.5 redox-regulated ATPase YchF compare
CSW01_16690 -1.8 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_17495 -1.8 -5.9 glycerol-3-phosphate dehydrogenase compare
CSW01_11920 -1.8 -6.2 NupC/NupG family nucleoside CNT transporter compare
CSW01_09465 -1.8 -6.3 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_00500 -1.8 -11.5 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_16835 -1.8 -4.2 catabolite repressor/activator compare
CSW01_00460 -1.8 -3.9 twin-arginine translocase subunit TatA compare
CSW01_03410 -1.8 -2.1 polyribonucleotide nucleotidyltransferase compare
CSW01_18310 -1.8 -1.4 hypothetical protein compare
CSW01_11225 -1.7 -4.7 flagellar basal body rod protein FlgB compare
CSW01_03695 -1.7 -6.4 ribosomal large subunit pseudouridine synthase D compare
CSW01_10285 -1.7 -2.1 heme exporter protein CcmB compare
CSW01_15425 -1.7 -1.0 DUF3265 domain-containing protein compare
CSW01_13420 -1.7 -2.6 elongation factor P--(R)-beta-lysine ligase compare
CSW01_05730 -1.7 -8.9 inosine/guanosine kinase compare
CSW01_02970 -1.7 -6.1 glutamate--cysteine ligase compare
CSW01_07435 -1.7 -1.7 hypothetical protein compare
CSW01_18835 -1.6 -1.7 acyl-CoA thioesterase compare
CSW01_01820 -1.6 -5.5 N-acetylmuramoyl-L-alanine amidase compare
CSW01_10280 -1.6 -3.4 heme exporter protein C compare
CSW01_07195 -1.6 -2.0 cytochrome biogenesis protein compare
CSW01_09240 -1.6 -3.8 Holliday junction branch migration DNA helicase RuvB compare
CSW01_03330 -1.6 -2.5 transcription elongation factor GreA compare
CSW01_16195 -1.6 -0.8 DUF645 domain-containing protein compare
CSW01_00540 -1.5 -0.9 hypothetical protein compare
CSW01_16905 -1.5 -2.9 DedA family protein compare
CSW01_07580 -1.5 -1.0 hypothetical protein compare
CSW01_07890 -1.5 -1.6 hypothetical protein compare
CSW01_11730 -1.5 -2.5 2-dehydropantoate 2-reductase compare
CSW01_02530 -1.5 -3.7 D-erythrose-4-phosphate dehydrogenase compare
CSW01_13810 -1.5 -4.9 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_00650 -1.5 -4.8 tyrosine recombinase XerC compare
CSW01_10170 -1.4 -1.0 MarC family protein compare
CSW01_04910 -1.4 -2.6 PhoH family protein compare
CSW01_05065 -1.4 -3.6 N-acetylglucosamine repressor compare
CSW01_02450 -1.4 -5.9 pyrroline-5-carboxylate reductase compare
CSW01_11215 -1.4 -4.6 flagellar hook assembly protein FlgD compare
CSW01_06335 -1.4 -3.0 (2Fe-2S)-binding protein compare
CSW01_05990 -1.4 -2.9 agglutination protein compare
CSW01_10745 -1.4 -1.3 DUF2897 domain-containing protein compare
CSW01_04495 -1.4 -1.4 hypothetical protein compare
CSW01_11590 -1.4 -3.4 xanthine phosphoribosyltransferase compare
CSW01_17835 -1.3 -1.4 hypothetical protein compare
CSW01_10560 -1.3 -3.9 chorismate synthase compare
CSW01_11145 -1.3 -3.0 hypothetical protein compare
CSW01_19125 -1.3 -1.8 branched-chain amino acid ABC transporter compare
CSW01_00170 -1.3 -3.2 thiol:disulfide interchange protein DsbA compare
CSW01_01140 -1.3 -1.1 lipid A biosynthesis lauroyl acyltransferase compare
CSW01_03325 -1.3 -2.7 porin compare
CSW01_17325 -1.3 -3.8 transaldolase compare
CSW01_07085 -1.3 -3.9 carboxypeptidase M32 compare
CSW01_07135 -1.3 -3.0 chromosome partitioning protein ParA compare
CSW01_09340 -1.3 -1.7 hypothetical protein compare
CSW01_06325 -1.3 -1.3 hypothetical protein compare
CSW01_14780 -1.2 -1.1 cation:proton antiporter compare
CSW01_00470 -1.2 -2.4 twin-arginine translocase subunit TatC compare
CSW01_01555 -1.2 -5.9 ATP-dependent RNA helicase RhlB compare
CSW01_04375 -1.2 -2.2 SsrA-binding protein compare
CSW01_16030 -1.2 -1.8 DUF3709 domain-containing protein compare
CSW01_09035 -1.2 -2.6 IclR family transcriptional regulator compare
CSW01_10340 -1.2 -2.9 MinD/ParA family protein compare
CSW01_05310 -1.2 -3.5 DUF3379 domain-containing protein compare
CSW01_03100 -1.2 -2.6 TetR/AcrR family transcriptional regulator compare
CSW01_06400 -1.2 -3.8 DUF1513 domain-containing protein compare
CSW01_05490 -1.1 -3.7 L-threonylcarbamoyladenylate synthase compare
CSW01_08625 -1.1 -2.5 chromosome partition protein MukE compare
CSW01_12120 -1.1 -1.9 8-oxo-dGTP diphosphatase MutT compare
CSW01_03880 -1.1 -1.0 HTH-type transcriptional regulator IscR compare
CSW01_11800 -1.1 -1.6 hydroxyacid dehydrogenase compare
CSW01_16285 -1.1 -1.1 acetyltransferase compare
CSW01_12465 -1.1 -3.0 elongation factor 4 compare
CSW01_12130 -1.1 -1.6 DUF721 domain-containing protein compare
CSW01_06395 -1.1 -4.5 iron-regulated protein A compare
CSW01_05215 -1.1 -2.6 molybdenum cofactor biosynthesis protein B compare
CSW01_02875 -1.0 -3.2 DNA recombination/repair protein RecA compare
CSW01_07300 -1.0 -2.5 lipoate--protein ligase compare
CSW01_14080 -1.0 -0.6 DUF3283 domain-containing protein compare
CSW01_03790 -1.0 -2.2 phosphate ABC transporter, permease protein PstA compare
CSW01_06485 -1.0 -2.1 PTS lactose/cellobiose transporter subunit IIA compare
CSW01_17160 -1.0 -1.8 TetR/AcrR family transcriptional regulator compare
CSW01_17060 -1.0 -2.3 DUF2861 domain-containing protein compare
CSW01_02005 -1.0 -2.2 hypothetical protein compare
CSW01_12735 -1.0 -2.5 RidA family protein compare
CSW01_09110 -1.0 -1.1 DNA-binding protein VF530 compare
CSW01_05925 -1.0 -2.2 tryptophan synthase subunit alpha compare
CSW01_05825 -1.0 -2.4 transcriptional regulator HexR compare
CSW01_14245 -1.0 -1.7 hypothetical protein compare
CSW01_11125 -1.0 -2.2 hypothetical protein compare
CSW01_02755 -1.0 -1.0 glutamyl-tRNA amidotransferase compare
CSW01_13220 -0.9 -1.4 hypothetical protein compare
CSW01_10415 -0.9 -2.8 succinate--CoA ligase subunit alpha compare
CSW01_04260 -0.9 -1.7 pilus assembly protein compare
CSW01_10145 -0.9 -2.3 ribonuclease E compare
CSW01_11200 -0.9 -2.8 flagellar basal-body rod protein FlgG compare
CSW01_18335 -0.9 -1.8 sugar O-acetyltransferase compare
CSW01_09250 -0.9 -1.0 crossover junction endodeoxyribonuclease RuvC compare
CSW01_12250 -0.9 -3.5 site-specific tyrosine recombinase XerD compare
CSW01_02455 -0.9 -2.8 YggS family pyridoxal phosphate enzyme compare
CSW01_12710 -0.9 -1.1 hypothetical protein compare
CSW01_05130 -0.9 -2.0 flagellar protein MotY compare
CSW01_05415 -0.9 -2.9 lipo-like protein compare
CSW01_18435 -0.9 -1.5 hypothetical protein compare
CSW01_01980 -0.9 -2.4 transcriptional regulator Zur compare
CSW01_18775 -0.9 -2.1 hypothetical protein compare
CSW01_11075 -0.9 -2.1 hypothetical protein compare
CSW01_09485 -0.9 -1.5 DUF1425 domain-containing protein compare
CSW01_06970 -0.9 -0.9 DUF2256 domain-containing protein compare
CSW01_02890 -0.9 -2.8 aspartate kinase compare
CSW01_08675 -0.9 -0.9 DUF2007 domain-containing protein compare
CSW01_18270 -0.9 -1.1 L-ectoine synthase compare
CSW01_15335 -0.9 -2.5 glycine cleavage system protein H compare
CSW01_06935 -0.9 -1.7 exonuclease compare
CSW01_08705 -0.9 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_09920 -0.9 -0.7 chromosome partitioning protein ParA compare
CSW01_01015 -0.9 -4.4 DNA helicase II compare
CSW01_02020 -0.8 -0.7 phosphoadenosine phosphosulfate reductase compare
CSW01_08700 -0.8 -2.2 DUF2498 domain-containing protein compare
CSW01_03745 -0.8 -0.8 ferredoxin compare
CSW01_11090 -0.8 -2.4 XRE family transcriptional regulator compare
CSW01_05225 -0.8 -0.7 molybdopterin synthase sulfur carrier subunit compare
CSW01_05070 -0.8 -3.7 N-acetylglucosamine-6-phosphate deacetylase compare
CSW01_10380 -0.8 -1.9 iron transporter FeoC compare
CSW01_00710 -0.8 -1.3 DUF4145 domain-containing protein compare
CSW01_17740 -0.8 -1.6 nicotinamidase/pyrazinamidase compare
CSW01_10075 -0.8 -2.4 endolytic transglycosylase MltG compare
CSW01_04080 -0.8 -2.0 hypothetical protein compare
CSW01_12610 -0.8 -1.1 3-isopropylmalate dehydratase small subunit compare
CSW01_10750 -0.8 -1.8 outer membrane protein assembly factor BamC compare
CSW01_05230 -0.8 -1.6 molybdopterin synthase catalytic subunit compare
CSW01_19195 -0.8 -2.5 LysR family transcriptional regulator compare
CSW01_16455 -0.8 -1.6 DJ-1/PfpI family protein compare
CSW01_08620 -0.8 -4.2 chromosome partition protein MukB compare
CSW01_16310 -0.8 -0.6 DUF3709 domain-containing protein compare
CSW01_09625 -0.8 -1.0 hypothetical protein compare
CSW01_10655 -0.8 -1.4 flagellar hook-basal body complex protein FliE compare
CSW01_11415 -0.8 -1.6 phenolic acid decarboxylase compare
CSW01_06785 -0.8 -2.6 FAA hydrolase family protein compare
CSW01_10215 -0.8 -2.0 histone deacetylase compare
CSW01_15225 -0.8 -3.1 antibiotic acetyltransferase compare
CSW01_17095 -0.8 -4.6 protein acetyltransferase compare
CSW01_14770 -0.8 -1.8 sodium:proton antiporter compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP3_phage across organisms