Experiment set4IT080 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate and casamino acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +3.7 31.0 acetate--CoA ligase family protein compare
MMP_RS03215 +2.0 15.9 MBL fold metallo-hydrolase compare
MMP_RS07115 +1.8 14.4 MBL fold metallo-hydrolase compare
MMP_RS07725 +1.3 6.7 4Fe-4S dicluster domain-containing protein compare
MMP_RS03385 +1.0 1.8 cation diffusion facilitator family transporter compare
MMP_RS03390 +0.9 6.5 malate dehydrogenase compare
MMP_RS02230 +0.8 6.3 sodium-dependent transporter compare
MMP_RS08660 +0.8 4.6 DHH family phosphoesterase compare
MMP_RS03300 +0.8 1.3 TOBE domain-containing protein compare
MMP_RS00915 +0.8 4.6 DUF116 domain-containing protein compare
MMP_RS01650 +0.8 1.5 sulfurtransferase TusA family protein compare
MMP_RS00675 +0.7 1.3 nitroreductase family protein compare
MMP_RS02310 +0.7 1.9 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS01420 +0.7 2.3 hypothetical protein compare
MMP_RS05835 +0.6 0.9 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS05535 +0.6 2.7 hypothetical protein compare
MMP_RS00945 +0.6 1.2 PadR family transcriptional regulator compare
MMP_RS02295 +0.6 4.0 TatD family hydrolase compare
MMP_RS09025 +0.5 1.1 hypothetical protein compare
MMP_RS07925 +0.5 1.9 haloacid dehalogenase compare
MMP_RS03210 +0.5 4.5 tRNA guanosine(15) transglycosylase TgtA compare
MMP_RS08350 +0.5 0.9 hypothetical protein compare
MMP_RS06435 +0.5 3.6 CBS domain-containing protein compare
MMP_RS02675 +0.5 2.3 hypothetical protein compare
MMP_RS03440 +0.5 1.0 MoaD/ThiS family protein compare
MMP_RS00705 +0.5 1.3 hypothetical protein compare
MMP_RS03320 +0.5 1.3 metal-dependent transcriptional regulator compare
MMP_RS07860 +0.5 0.5 hypothetical protein compare
MMP_RS06460 +0.5 2.0 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMP_RS06765 +0.5 2.3 flap endonuclease-1 compare
MMP_RS05435 +0.5 3.3 5'/3'-nucleotidase SurE compare
MMP_RS08310 +0.4 1.4 TMEM165/GDT1 family protein compare
MMP_RS06575 +0.4 1.8 fluoride efflux transporter CrcB compare
MMP_RS06600 +0.4 1.1 class III signal peptide-containing protein compare
MMP_RS02490 +0.4 2.0 hypothetical protein compare
MMP_RS00955 +0.4 2.6 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS04485 +0.4 3.2 putative beta-lysine N-acetyltransferase compare
MMP_RS06540 +0.4 1.3 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS02410 +0.4 1.4 ABC transporter substrate-binding protein compare
MMP_RS01885 +0.4 2.1 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS00760 +0.4 2.7 branched-chain-amino-acid transaminase compare
MMP_RS04480 +0.4 3.3 lysine 2 3-aminomutase compare
MMP_RS06545 +0.4 1.6 ferredoxin family protein compare
MMP_RS00905 +0.4 1.8 phenylacetate--CoA ligase compare
MMP_RS01540 +0.4 1.5 DUF504 domain-containing protein compare
MMP_RS01525 +0.4 1.0 nucleoside-diphosphate kinase compare
MMP_RS05830 +0.4 1.7 peptidyl-prolyl cis-trans isomerase compare
MMP_RS03150 +0.4 2.4 phosphoglycerate mutase compare
MMP_RS01435 +0.4 2.0 DMT family transporter compare
MMP_RS05180 +0.3 2.5 Nre family DNA repair protein compare
MMP_RS08340 +0.3 1.3 4Fe-4S binding protein compare
MMP_RS06555 +0.3 1.6 cupin domain-containing protein compare
MMP_RS07180 +0.3 2.5 DEAD/DEAH box helicase compare
MMP_RS05900 +0.3 2.4 tetratricopeptide repeat protein compare
MMP_RS06970 +0.3 1.8 ribosomal protein S18-alanine N-acetyltransferase compare
MMP_RS07890 +0.3 1.1 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS03340 +0.3 0.5 ABC transporter ATP-binding protein compare
MMP_RS01785 +0.3 2.1 hypothetical protein compare
MMP_RS08260 +0.3 2.0 DUF99 family protein compare
MMP_RS07560 +0.3 1.8 prefoldin subunit alpha compare
MMP_RS05640 +0.3 1.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01275 +0.3 1.5 class III signal peptide-containing protein compare
MMP_RS08940 +0.3 0.6 MetS family NSS transporter small subunit compare
MMP_RS07125 +0.3 1.2 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07770 +0.3 1.1 alanine racemase compare
MMP_RS06610 +0.3 1.0 DUF2334 domain-containing protein compare
MMP_RS05560 +0.3 1.7 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
MMP_RS00660 +0.3 2.4 alkaline phosphatase family protein compare
MMP_RS03870 +0.3 2.2 purine NTPase compare
MMP_RS05175 +0.3 2.1 hypothetical protein compare
MMP_RS08535 +0.3 1.6 bis-aminopropyl spermidine synthase family protein compare
MMP_RS02370 +0.3 1.8 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS06550 +0.3 2.1 AMP-binding protein compare
MMP_RS08980 +0.3 1.4 hypothetical protein compare
MMP_RS04530 +0.3 1.6 ABC transporter permease compare
MMP_RS07840 +0.3 1.3 ribonuclease III compare
MMP_RS00185 +0.3 2.5 potassium channel protein compare
MMP_RS07895 +0.3 1.2 cytochrome c compare
MMP_RS04795 +0.3 2.1 tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY compare
MMP_RS06335 +0.3 1.3 HAD family hydrolase compare
MMP_RS00665 +0.3 1.1 hypothetical protein compare
MMP_RS02245 +0.3 1.0 hypothetical protein compare
MMP_RS07415 +0.3 1.5 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS05700 +0.3 1.9 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS05975 +0.3 0.7 hypothetical protein compare
MMP_RS07885 +0.3 0.9 tripartite tricarboxylate transporter permease compare
MMP_RS03535 +0.3 1.2 helix-turn-helix transcriptional regulator compare
MMP_RS05455 +0.3 1.7 DUF167 domain-containing protein compare
MMP_RS06515 +0.3 0.7 UPF0489 family protein compare
MMP_RS03465 +0.3 0.5 adenine phosphoribosyltransferase compare
MMP_RS03225 +0.3 1.3 acetolactate decarboxylase compare
MMP_RS00240 +0.3 2.1 type II secretion system F family protein compare
MMP_RS00145 +0.3 1.5 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS08785 +0.3 0.4 RNA-protein complex protein Nop10 compare
MMP_RS01155 +0.3 1.7 XRE family transcriptional regulator compare
MMP_RS06490 +0.3 1.3 hypothetical protein compare
MMP_RS00535 +0.3 0.8 TIGR00375 family protein compare
MMP_RS02770 +0.3 1.5 hypothetical protein compare
MMP_RS07815 +0.3 0.5 DUF2120 domain-containing protein compare
MMP_RS08620 +0.3 1.3 flagellar accessory protein FlaH compare
MMP_RS07805 +0.2 1.5 ABC transporter permease compare
MMP_RS05250 +0.2 0.5 NFYB/HAP3 family transcription factor subunit compare
MMP_RS03670 +0.2 1.3 DUF1890 domain-containing protein compare
MMP_RS07120 +0.2 1.8 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS02315 +0.2 1.0 RimK family alpha-L-glutamate ligase compare
MMP_RS02845 +0.2 2.0 hypothetical protein compare
MMP_RS07775 +0.2 1.3 alanine dehydrogenase compare
MMP_RS04730 +0.2 1.5 flavodoxin family protein compare
MMP_RS01580 +0.2 1.4 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS05980 +0.2 1.6 ferritin compare
MMP_RS06495 +0.2 0.9 YkgJ family cysteine cluster protein compare
MMP_RS02085 +0.2 1.6 inosine/xanthosine triphosphatase compare
MMP_RS06915 +0.2 0.9 metallophosphoesterase compare
MMP_RS08230 +0.2 1.7 50S ribosomal protein L11 methyltransferase compare
MMP_RS08775 +0.2 1.1 methanogenesis marker 9 domain-containing protein compare
MMP_RS06000 +0.2 1.1 divalent-cation tolerance protein CutA compare
MMP_RS09050 +0.2 0.7 CAP domain-containing protein compare
MMP_RS08670 +0.2 1.4 metallophosphoesterase compare
MMP_RS03350 +0.2 1.0 winged helix-turn-helix domain-containing protein compare
MMP_RS01875 +0.2 1.4 N-acetyltransferase compare
MMP_RS05990 +0.2 0.8 DsrE family protein compare
MMP_RS03790 +0.2 1.3 hypothetical protein compare
MMP_RS03395 +0.2 1.3 hypothetical protein compare
MMP_RS08355 +0.2 1.4 Na(+)/H(+) antiporter subunit B compare
MMP_RS02415 +0.2 0.8 site-specific integrase compare
MMP_RS09030 +0.2 1.0 hypothetical protein compare
MMP_RS01550 +0.2 1.4 DUF1624 domain-containing protein compare
MMP_RS04060 +0.2 1.1 hypothetical protein compare
MMP_RS01130 +0.2 1.1 flavoprotein compare
MMP_RS04625 +0.2 1.5 DEAD/DEAH box helicase compare
MMP_RS01260 +0.2 0.9 HDIG domain-containing protein compare
MMP_RS02790 +0.2 0.4 class III signal peptide-containing protein compare
MMP_RS06190 +0.2 1.3 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS05945 +0.2 0.7 CBS domain-containing protein compare
MMP_RS04520 +0.2 0.7 nucleoside deaminase compare
MMP_RS08345 +0.2 1.5 4Fe-4S binding protein compare
MMP_RS05495 +0.2 1.4 hypothetical protein compare
MMP_RS06520 +0.2 1.0 DUF1786 domain-containing protein compare
MMP_RS03860 +0.2 1.4 hypothetical protein compare
MMP_RS01090 +0.2 1.3 ABC transporter substrate-binding protein compare
MMP_RS08485 +0.2 1.2 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS06140 +0.2 0.7 radical SAM protein compare
MMP_RS07910 +0.2 1.1 NAD(P)H-hydrate dehydratase compare
MMP_RS05820 +0.2 1.1 RNA-binding transcriptional accessory protein compare
MMP_RS05910 +0.2 0.6 cell division ATPase MinD compare
MMP_RS08595 +0.2 0.3 flagellar protein C compare
MMP_RS00545 +0.2 0.8 XRE family transcriptional regulator compare
MMP_RS03765 +0.2 1.0 CopG family ribbon-helix-helix protein compare
MMP_RS05960 +0.2 1.4 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS05525 +0.2 1.1 calcium/sodium antiporter compare
MMP_RS05490 +0.2 0.9 IMPACT family protein compare
MMP_RS08675 +0.2 0.7 class III signal peptide-containing protein compare
MMP_RS06445 +0.2 0.9 DUF89 domain-containing protein compare
MMP_RS06860 +0.2 0.3 4Fe-4S binding protein compare
MMP_RS04285 +0.2 1.2 Ni/Fe hydrogenase subunit alpha compare
MMP_RS07625 +0.2 0.7 cobalt ECF transporter T component CbiQ compare
MMP_RS07900 +0.2 0.6 YeeE/YedE family protein compare
MMP_RS00910 +0.2 1.0 2-phosphosulfolactate phosphatase compare
MMP_RS05680 +0.2 1.1 phosphate signaling complex protein PhoU compare
MMP_RS05460 +0.2 0.9 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS06910 +0.2 0.9 RlmF-related methyltransferase compare
MMP_RS00810 +0.2 0.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS01150 +0.2 0.7 aldo/keto reductase compare
MMP_RS05940 +0.2 1.1 corrinoid protein compare
MMP_RS04540 +0.2 1.3 tetratricopeptide repeat protein compare
MMP_RS08280 +0.2 0.6 proteasome assembly chaperone family protein compare
MMP_RS08500 +0.2 0.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS03020 +0.2 0.7 peptidylprolyl isomerase compare
MMP_RS01635 +0.2 0.6 thiamine pyrophosphate-dependent enzyme compare
MMP_RS02000 +0.2 1.1 radical SAM protein compare
MMP_RS01570 +0.2 0.4 hypothetical protein compare
MMP_RS06275 +0.2 1.2 ATP-dependent DNA helicase compare
MMP_RS07155 +0.2 1.0 MFS transporter compare
MMP_RS03560 +0.2 1.4 Na+/H+ antiporter NhaC family protein compare
MMP_RS05715 +0.2 0.9 hypothetical protein compare
MMP_RS05275 +0.2 1.0 AI-2E family transporter compare
MMP_RS00770 +0.2 0.8 hypothetical protein compare
MMP_RS03405 +0.2 1.0 RNA 3'-terminal phosphate cyclase compare
MMP_RS01160 +0.2 0.9 DMT family transporter compare
MMP_RS05695 +0.2 0.8 phospholipase D-like domain-containing protein compare
MMP_RS02775 +0.1 1.2 hypothetical protein compare
MMP_RS02705 +0.1 1.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01470 +0.1 0.6 ATP-binding cassette domain-containing protein compare
MMP_RS06290 +0.1 0.9 DNA repair and recombination protein RadA compare
MMP_RS05530 +0.1 0.9 signal peptide peptidase SppA compare
MMP_RS08835 +0.1 1.0 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS00085 +0.1 1.0 DNA cytosine methyltransferase compare
MMP_RS00630 +0.1 0.9 ECF transporter S component compare
MMP_RS06570 +0.1 0.5 DUF190 domain-containing protein compare
MMP_RS04725 +0.1 1.1 hypothetical protein compare
MMP_RS01065 +0.1 1.1 alpha/beta hydrolase compare
MMP_RS07090 +0.1 0.8 tRNA (adenine-N1)-methyltransferase compare
MMP_RS03245 +0.1 0.7 DNA repair and recombination protein RadB compare
MMP_RS05020 +0.1 0.4 hypothetical protein compare
MMP_RS02590 +0.1 1.0 low molecular weight phosphatase family protein compare
MMP_RS06905 +0.1 0.5 hypothetical protein compare
MMP_RS08000 +0.1 1.1 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS08480 +0.1 0.9 molybdate ABC transporter substrate-binding protein compare
MMP_RS06535 +0.1 0.7 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS05995 +0.1 1.1 FprA family A-type flavoprotein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Mc_vitamins across organisms