Experiment set4IT079 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Choline Lysine 12 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.7 -4.4 peroxidase compare
AO353_09315 -3.3 -11.0 LysR family transcriptional regulator compare
AO353_06455 -3.3 -3.1 D-alanyl-D-alanine carboxypeptidase compare
AO353_13130 -3.1 -4.2 N-acetylmuramoyl-L-alanine amidase compare
AO353_11750 -3.0 -2.0 ATPase compare
AO353_04190 -2.9 -2.8 glycerol-3-phosphate dehydrogenase compare
AO353_00825 -2.9 -3.9 porin compare
AO353_06460 -2.8 -8.0 hypothetical protein compare
AO353_07140 -2.5 -16.8 peptidase M23 compare
AO353_08980 -2.5 -3.3 heme biosynthesis operon protein HemX compare
AO353_07315 -2.4 -3.9 rRNA methyltransferase compare
AO353_03590 -2.4 -4.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_13160 -2.3 -2.2 membrane protease HflC compare
AO353_03520 -2.3 -4.0 hypothetical protein compare
AO353_03580 -2.3 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_18540 -2.2 -3.7 pseudouridine synthase compare
AO353_14485 -2.2 -2.5 pseudouridine synthase compare
AO353_11730 -2.2 -9.5 glutamate--cysteine ligase compare
AO353_15900 -2.1 -2.8 GTP-binding protein compare
AO353_06040 -2.1 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_05625 -2.1 -2.4 transcription elongation factor GreA compare
AO353_00460 -2.1 -3.5 TetR family transcriptional regulator compare
AO353_06585 -2.0 -7.2 hypothetical protein compare
AO353_02710 -1.9 -10.6 (p)ppGpp synthetase compare
AO353_14595 -1.9 -9.0 carbonate dehydratase compare
AO353_03585 -1.9 -3.4 ATP-dependent DNA helicase RuvA compare
AO353_10455 -1.9 -1.3 tRNA modification GTPase MnmE compare
AO353_04355 -1.8 -2.6 homoserine dehydrogenase compare
AO353_12090 -1.8 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_01975 -1.8 -7.3 glycosyl transferase compare
AO353_03615 -1.8 -3.2 cold-shock protein compare
AO353_10930 -1.8 -7.5 DNA polymerase I compare
AO353_05880 -1.7 -3.0 plasmid stabilization protein compare
AO353_20185 -1.6 -6.0 DNA-binding protein compare
AO353_07515 -1.6 -2.1 transporter compare
AO353_15250 -1.6 -3.3 cytochrome B compare
AO353_05690 -1.6 -3.6 SsrA-binding protein compare
AO353_09250 -1.6 -3.2 exodeoxyribonuclease III compare
AO353_04565 -1.6 -5.4 nucleoid-associated protein compare
AO353_07505 -1.6 -7.0 dethiobiotin synthetase compare
AO353_20170 -1.6 -5.1 trigger factor compare
AO353_01970 -1.5 -8.6 hypothetical protein compare
AO353_16805 -1.5 -5.4 recombinase RecA compare
AO353_26390 -1.5 -3.0 glyoxalase compare
AO353_05240 -1.5 -2.3 rod shape-determining protein MreD compare
AO353_12115 -1.5 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_20800 -1.5 -1.4 hypothetical protein compare
AO353_03710 -1.5 -2.4 formyltetrahydrofolate deformylase compare
AO353_12935 -1.4 -3.5 glycosyltransferase compare
AO353_14420 -1.4 -3.6 molecular chaperone DnaK compare
AO353_04500 -1.4 -2.7 DNA repair protein RecO compare
AO353_15490 -1.4 -2.7 hypothetical protein compare
AO353_27720 -1.4 -4.1 cupin compare
AO353_08045 -1.4 -10.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_13155 -1.4 -3.9 hypothetical protein compare
AO353_06045 -1.4 -6.0 exodeoxyribonuclease V subunit beta compare
AO353_09320 -1.4 -7.7 ATP-dependent DNA helicase RecG compare
AO353_12650 -1.4 -1.6 hypothetical protein compare
AO353_14940 -1.4 -3.2 malate:quinone oxidoreductase compare
AO353_12790 -1.4 -2.1 hypothetical protein compare
AO353_20200 -1.3 -3.5 peptidylprolyl isomerase compare
AO353_06850 -1.3 -3.9 MFS transporter compare
AO353_13945 -1.3 -4.9 ubiquinol oxidase subunit II compare
AO353_12365 -1.3 -3.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_18560 -1.3 -2.8 class I peptide chain release factor compare
AO353_18555 -1.3 -9.0 aromatic amino acid transporter compare
AO353_02015 -1.3 -5.8 acetyltransferase compare
AO353_13100 -1.3 -2.0 GTPase RsgA compare
AO353_12950 -1.3 -6.2 polymerase compare
AO353_14740 -1.3 -3.0 GTP-binding protein compare
AO353_01985 -1.3 -7.3 hypothetical protein compare
AO353_02250 -1.3 -2.6 chorismate synthase compare
AO353_19250 -1.3 -2.4 molybdenum cofactor guanylyltransferase compare
AO353_01995 -1.3 -8.7 hypothetical protein compare
AO353_20175 -1.3 -2.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_26055 -1.3 -2.7 hypothetical protein compare
AO353_08775 -1.3 -2.5 cell division protein ZapA compare
AO353_07525 -1.3 -8.8 biotin synthase compare
AO353_03290 -1.3 -2.2 peptide deformylase compare
AO353_07355 -1.2 -4.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13940 -1.2 -5.6 cytochrome D ubiquinol oxidase subunit I compare
AO353_07520 -1.2 -8.5 8-amino-7-oxononanoate synthase compare
AO353_08350 -1.2 -5.6 hypothetical protein compare
AO353_05550 -1.2 -5.4 pseudouridine synthase compare
AO353_04175 -1.2 -4.3 glycerol uptake facilitator GlpF compare
AO353_16835 -1.2 -2.3 LuxR family transcriptional regulator compare
AO353_07510 -1.2 -6.8 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_02020 -1.2 -3.9 hypothetical protein compare
AO353_03275 -1.2 -1.8 LysR family transcriptional regulator compare
AO353_03795 -1.2 -3.4 fumarate hydratase compare
AO353_02810 -1.2 -6.1 histidine kinase compare
AO353_00185 -1.2 -2.0 phage tail protein compare
AO353_20865 -1.2 -2.3 cold-shock protein compare
AO353_17885 -1.2 -2.2 hypothetical protein compare
AO353_19365 -1.2 -6.4 thiol:disulfide interchange protein compare
AO353_08115 -1.2 -4.9 energy transducer TonB compare
AO353_10430 -1.2 -3.2 chromosome partitioning protein ParB compare
AO353_00635 -1.2 -2.7 hypothetical protein compare
AO353_01690 -1.2 -4.8 hypothetical protein compare
AO353_09235 -1.2 -5.5 phosphoglucomutase compare
AO353_26090 -1.1 -2.4 hypothetical protein compare
AO353_17165 -1.1 -2.6 ATP-dependent helicase compare
AO353_01990 -1.1 -4.6 UDP-N-acetylglucosamine 2-epimerase compare
AO353_27950 -1.1 -2.1 hypothetical protein compare
AO353_12930 -1.1 -2.5 GlcNAc-PI de-N-acetylase compare
AO353_08015 -1.1 -5.3 5,10-methylenetetrahydrofolate reductase compare
AO353_19070 -1.1 -2.6 hypothetical protein compare
AO353_08975 -1.1 -4.6 heme biosynthesis protein HemY compare
AO353_13140 -1.1 -3.7 tRNA dimethylallyltransferase compare
AO353_11915 -1.1 -5.3 agmatine deiminase compare
AO353_00510 -1.1 -4.2 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_02660 -1.0 -2.9 peptidase P60 compare
AO353_02010 -1.0 -4.7 glycosyl transferase family 1 compare
AO353_09660 -1.0 -1.6 hypothetical protein compare
AO353_20095 -1.0 -3.4 histidine kinase compare
AO353_14400 -1.0 -3.1 Fis family transcriptional regulator compare
AO353_05020 -1.0 -6.3 cysteine biosynthesis protein CysZ conserved
AO353_06050 -1.0 -4.7 exodeoxyribonuclease V subunit gamma compare
AO353_07155 -1.0 -4.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_13580 -1.0 -3.2 copper resistance protein CopZ compare
AO353_01410 -1.0 -2.6 ribonuclease E compare
AO353_12500 -1.0 -1.7 shikimate kinase compare
AO353_14385 -1.0 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_05420 -1.0 -1.8 peptide chain release factor 3 compare
AO353_15445 -1.0 -2.5 disulfide bond formation protein B compare
AO353_02025 -1.0 -5.9 mannose-1-phosphate guanyltransferase compare
AO353_27130 -1.0 -1.7 hypothetical protein compare
AO353_17035 -1.0 -3.5 hypothetical protein compare
AO353_19360 -1.0 -1.9 peroxiredoxin compare
AO353_14380 -1.0 -2.9 pantoate--beta-alanine ligase compare
AO353_13070 -1.0 -5.0 phosphoserine phosphatase compare
AO353_04520 -1.0 -3.7 elongation factor 4 compare
AO353_16375 -0.9 -2.1 hypothetical protein compare
AO353_14225 -0.9 -5.3 laccase compare
AO353_00105 -0.9 -1.6 hypothetical protein compare
AO353_20860 -0.9 -2.3 hypothetical protein compare
AO353_25315 -0.9 -3.1 malonate decarboxylase subunit epsilon compare
AO353_21625 -0.9 -1.7 Fe/S biogenesis protein NfuA compare
AO353_23285 -0.9 -2.3 hypothetical protein compare
AO353_07645 -0.9 -1.2 sarcosine oxidase subunit gamma compare
AO353_10950 -0.9 -5.5 thiol:disulfide interchange protein compare
AO353_12390 -0.9 -2.4 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_12940 -0.9 -3.9 glycosyl transferase compare
AO353_28640 -0.9 -2.6 hypothetical protein compare
AO353_16940 -0.9 -3.8 deoxycytidine triphosphate deaminase compare
AO353_00650 -0.9 -1.6 cytochrome biogenesis protein compare
AO353_14370 -0.9 -3.9 glucose-6-phosphate isomerase compare
AO353_14060 -0.9 -2.7 hypothetical protein compare
AO353_01675 -0.9 -3.3 transcriptional regulator compare
AO353_09285 -0.9 -5.8 reactive intermediate/imine deaminase compare
AO353_27650 -0.9 -2.9 cell division protein FtsK compare
AO353_09240 -0.9 -2.1 acetylglutamate kinase compare
AO353_23495 -0.9 -2.2 SAM-dependent methyltransferase compare
AO353_09135 -0.9 -1.7 cytochrome C compare
AO353_09015 -0.9 -1.9 DNA-binding protein compare
AO353_00515 -0.9 -2.0 hypothetical protein compare
AO353_00505 -0.9 -2.7 3-ketoacyl-CoA thiolase compare
AO353_09440 -0.9 -1.7 type VI secretion protein compare
AO353_13200 -0.9 -5.7 exoribonuclease R compare
AO353_06355 -0.9 -2.6 thiamine-phosphate pyrophosphorylase compare
AO353_20925 -0.9 -2.0 hypothetical protein compare
AO353_26900 -0.9 -3.5 glycerate kinase compare
AO353_04365 -0.8 -3.4 recombinase XerD compare
AO353_13300 -0.8 -1.7 LOG family protein compare
AO353_23945 -0.8 -1.3 hypothetical protein compare
AO353_08165 -0.8 -2.0 pyrroline-5-carboxylate reductase compare
AO353_24600 -0.8 -2.3 hypothetical protein compare
AO353_16415 -0.8 -5.5 beta-(1-3)-glucosyl transferase compare
AO353_02000 -0.8 -2.1 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_08880 -0.8 -1.7 exopolyphosphatase compare
AO353_03545 -0.8 -4.1 hypothetical protein compare
AO353_15905 -0.8 -3.9 outer membrane protein assembly factor BamB compare
AO353_13225 -0.8 -2.1 50S ribosomal protein L9 compare
AO353_22415 -0.8 -2.2 alcohol dehydrogenase compare
AO353_27215 -0.8 -2.0 hypothetical protein compare
AO353_02005 -0.8 -1.1 hypothetical protein compare
AO353_11770 -0.8 -1.4 molecular chaperone Hsp33 compare
AO353_13715 -0.8 -1.8 translation initiation factor Sui1 compare
AO353_13585 -0.8 -2.6 predicted copper homeostasis protein (from data) compare
AO353_05135 -0.8 -4.5 toluene tolerance protein compare
AO353_08510 -0.8 -2.9 3-phosphoglycerate dehydrogenase compare
AO353_28425 -0.8 -2.4 TetR family transcriptional regulator compare
AO353_17640 -0.8 -1.5 serine peptidase compare
AO353_12540 -0.8 -1.9 hypothetical protein compare
AO353_06840 -0.8 -4.4 hypothetical protein compare
AO353_12345 -0.7 -1.3 twin-arginine protein translocation system subunit TatC compare
AO353_18505 -0.7 -1.0 translation initiation factor 2 compare
AO353_04925 -0.7 -3.0 aldolase compare
AO353_11165 -0.7 -4.5 hypothetical protein compare
AO353_19195 -0.7 -2.6 response regulator compare
AO353_10065 -0.7 -4.1 hypothetical protein compare
AO353_25720 -0.7 -2.5 peroxidase compare
AO353_02595 -0.7 -2.0 cobalamin synthase compare
AO353_13610 -0.7 -2.3 precorrin isomerase compare
AO353_10435 -0.7 -4.0 chromosome partitioning protein compare
AO353_23625 -0.7 -2.9 hypothetical protein compare
AO353_09720 -0.7 -1.1 hypothetical protein compare
AO353_18130 -0.7 -1.2 hypothetical protein compare
AO353_29145 -0.7 -2.3 HxlR family transcriptional regulator compare
AO353_05145 -0.7 -3.2 ABC transporter permease compare


Specific Phenotypes

For 3 genes in this experiment

For stress Choline Lysine in Pseudomonas fluorescens FW300-N2E3

For stress Choline Lysine across organisms