Experiment set4IT079 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Choline Lysine 12 mM

200 most detrimental genes:

  gene name fitness t score description  
AO353_22195 +1.3 2.7 metal ABC transporter permease compare
AO353_02395 +1.3 10.4 mechanosensitive ion channel protein compare
AO353_24605 +1.1 3.3 hypothetical protein compare
AO353_27855 +1.0 1.7 MarR family transcriptional regulator compare
AO353_23730 +1.0 2.9 hypothetical protein compare
AO353_06540 +1.0 1.4 hypothetical protein compare
AO353_21110 +1.0 2.6 hypothetical protein compare
AO353_19000 +0.9 1.6 ABC transporter compare
AO353_01685 +0.9 1.6 hypothetical protein compare
AO353_01915 +0.9 1.1 GlcG protein compare
AO353_08465 +0.9 7.5 phosphoenolpyruvate-protein phosphotransferase compare
AO353_17870 +0.9 3.3 NADH dehydrogenase compare
AO353_03005 +0.8 4.0 succinylarginine dihydrolase compare
AO353_22915 +0.8 3.4 oxidoreductase compare
AO353_22510 +0.8 2.8 hypothetical protein compare
AO353_17005 +0.8 1.3 hypothetical protein compare
AO353_09060 +0.8 2.1 hypothetical protein compare
AO353_28435 +0.7 3.0 AraC family transcriptional regulator compare
AO353_22250 +0.7 3.3 NADPH-dependent FMN reductase compare
AO353_24685 +0.7 1.8 hypothetical protein compare
AO353_26935 +0.7 1.9 LysR family transcriptional regulator compare
AO353_17380 +0.7 2.9 hypothetical protein compare
AO353_22870 +0.7 2.2 oxidoreductase compare
AO353_02330 +0.7 1.8 allantoicase compare
AO353_19810 +0.7 2.0 filamentous hemagglutinin compare
AO353_02750 +0.7 4.1 hypothetical protein compare
AO353_25305 +0.7 2.8 malonate transporter compare
AO353_12535 +0.7 2.4 hypothetical protein compare
AO353_28565 +0.7 2.1 hypothetical protein compare
AO353_21455 +0.7 1.0 cation:proton antiporter compare
AO353_28300 +0.7 2.5 cupin compare
AO353_20255 +0.7 1.8 transcriptional regulator compare
AO353_16635 +0.7 2.8 pyocin R2, holin compare
AO353_21465 +0.7 1.9 cation:proton antiporter compare
AO353_26650 +0.6 2.7 dihydrolipoamide dehydrogenase compare
AO353_23840 +0.6 2.2 hypothetical protein compare
AO353_14970 +0.6 2.5 hypothetical protein compare
AO353_03430 +0.6 2.2 methylglyoxal synthase compare
AO353_08130 +0.6 1.6 uracil phosphoribosyltransferase compare
AO353_07580 +0.6 2.3 glutathione S-transferase compare
AO353_10725 +0.6 1.1 dodecin flavoprotein compare
AO353_10895 +0.6 2.3 hypothetical protein compare
AO353_08910 +0.6 1.2 hypothetical protein compare
AO353_26430 +0.6 2.4 hypothetical protein compare
AO353_16495 +0.6 2.6 zinc metallopeptidase RseP compare
AO353_07920 +0.6 2.9 hypothetical protein compare
AO353_00490 +0.6 1.7 PasA protein compare
AO353_05425 +0.6 2.9 glycine/betaine ABC transporter permease compare
AO353_19085 +0.6 1.5 organic hydroperoxide resistance protein compare
AO353_10730 +0.6 0.9 hypothetical protein compare
AO353_27425 +0.6 3.0 transcriptional regulator compare
AO353_25955 +0.6 2.2 NIPSNAP family containing protein compare
AO353_04580 +0.6 2.1 GIY-YIG nuclease compare
AO353_11255 +0.6 1.6 RND transporter compare
AO353_17250 +0.6 1.8 nitrile hydratase compare
AO353_23725 +0.6 2.8 hypothetical protein compare
AO353_25980 +0.6 2.9 ribosomal-protein-alanine acetyltransferase compare
AO353_01595 +0.6 1.6 Flp pilus assembly protein CpaB compare
AO353_21100 +0.6 1.4 DNA-binding protein compare
AO353_03010 +0.6 2.8 succinylglutamate-semialdehyde dehydrogenase compare
AO353_19755 +0.6 2.1 cytosine deaminase compare
AO353_22780 +0.6 2.5 phosphoglycerate mutase compare
AO353_26180 +0.6 1.6 phage tail protein compare
AO353_14955 +0.6 2.1 hypothetical protein compare
AO353_22500 +0.6 1.3 hypothetical protein compare
AO353_22375 +0.6 2.0 cytochrome c-550 PedF compare
AO353_10780 +0.6 0.9 DNA-binding protein compare
AO353_13870 +0.6 2.8 acyl dehydratase compare
AO353_07915 +0.6 2.4 hypothetical protein compare
AO353_04320 +0.6 2.6 single-stranded-DNA-specific exonuclease RecJ compare
AO353_15830 +0.6 1.5 transcriptional regulator compare
AO353_09560 +0.6 0.7 type VI secretion protein compare
AO353_10955 +0.6 3.6 endonuclease compare
AO353_17410 +0.6 1.2 arylsulfate sulfotransferase compare
AO353_11920 +0.5 1.7 hypothetical protein compare
AO353_02130 +0.5 2.3 disulfide bond formation protein DsbA compare
AO353_22600 +0.5 1.4 hypothetical protein compare
AO353_02940 +0.5 1.4 DNA-binding protein compare
AO353_08225 +0.5 2.7 hypothetical protein compare
AO353_26525 +0.5 1.0 hypothetical protein compare
AO353_04275 +0.5 2.5 polyamine ABC transporter ATP-binding protein compare
AO353_23715 +0.5 3.0 hypothetical protein compare
AO353_20790 +0.5 2.2 penicillin-binding protein activator LpoB compare
AO353_20205 +0.5 2.3 hypothetical protein compare
AO353_01190 +0.5 1.1 hypothetical protein compare
AO353_29215 +0.5 0.9 alpha/beta hydrolase compare
AO353_28000 +0.5 2.0 branched-chain amino acid ABC transporter compare
AO353_28360 +0.5 3.0 ATPase P compare
AO353_00870 +0.5 1.7 hypothetical protein compare
AO353_12665 +0.5 1.6 glycosyl transferase compare
AO353_23930 +0.5 2.2 chemotaxis protein CheY compare
AO353_00455 +0.5 1.2 beta-hexosaminidase compare
AO353_19295 +0.5 1.4 hypothetical protein compare
AO353_01315 +0.5 2.9 TetR family transcriptional regulator compare
AO353_01250 +0.5 2.9 hydroxyacid dehydrogenase compare
AO353_00975 +0.5 1.5 hypothetical protein compare
AO353_07205 +0.5 2.5 lipoate--protein ligase compare
AO353_11965 +0.5 2.3 hypothetical protein compare
AO353_08035 +0.5 1.9 hypothetical protein compare
AO353_03815 +0.5 0.9 heme utilization protein compare
AO353_13860 +0.5 3.0 hypothetical protein compare
AO353_27570 +0.5 2.0 GCN5 family acetyltransferase compare
AO353_04650 +0.5 1.6 molybdenum cofactor biosynthesis protein MoaE compare
AO353_10745 +0.5 2.4 hypothetical protein compare
AO353_26810 +0.5 1.8 (2Fe-2S)-binding protein compare
AO353_04930 +0.5 1.1 flavodoxin compare
AO353_11695 +0.5 1.7 hypothetical protein compare
AO353_29020 +0.5 2.0 amidohydrolase compare
AO353_04065 +0.5 1.8 electron transporter RnfB compare
AO353_22520 +0.5 1.1 hypothetical protein compare
AO353_02065 +0.5 2.7 aspartate aminotransferase compare
AO353_09055 +0.5 2.6 HAD family hydrolase compare
AO353_11310 +0.5 2.1 aspartyl beta-hydroxylase compare
AO353_04480 +0.5 1.4 NGG1p interacting factor NIF3 compare
AO353_18925 +0.5 0.8 ATPase compare
AO353_00170 +0.5 1.0 lysozyme compare
AO353_04940 +0.5 2.3 hypothetical protein compare
AO353_24960 +0.5 2.1 sulfate ABC transporter substrate-binding protein compare
AO353_22700 +0.5 1.0 LexA family transcriptional regulator compare
AO353_16440 +0.5 1.1 ArsC family transcriptional regulator compare
AO353_03190 +0.5 2.7 hypothetical protein compare
AO353_21085 +0.5 2.4 lysine transporter LysE compare
AO353_01045 +0.5 1.7 phasin compare
AO353_21355 +0.5 1.0 xylose isomerase compare
AO353_11090 +0.5 2.8 NADP transhydrogenase subunit alpha compare
AO353_19045 +0.5 3.0 2-dehydropantoate 2-reductase compare
AO353_25200 +0.5 2.5 glutathione-dependent formaldehyde-activating protein compare
AO353_22595 +0.5 1.9 hypothetical protein compare
AO353_06710 +0.5 0.9 riboflavin synthase subunit alpha compare
AO353_06325 +0.5 1.1 hypothetical protein compare
AO353_11545 +0.5 2.4 sulfate ABC transporter permease compare
AO353_03870 +0.5 1.7 LysR family transcriptional regulator compare
AO353_24830 +0.5 1.1 enoyl-CoA hydratase compare
AO353_06795 +0.5 0.9 Isochorismatase compare
AO353_03510 +0.5 1.1 glycine cleavage system protein T compare
AO353_24940 +0.5 2.3 nitrogen fixation protein NifU compare
AO353_12570 +0.5 1.5 type II secretion system protein GspI compare
AO353_13405 +0.5 1.0 urease accessory protein UreF compare
AO353_22305 +0.4 1.1 LysR family transcriptional regulator compare
AO353_17750 +0.4 1.1 transcriptional regulator compare
AO353_25775 +0.4 2.3 N-acetylglucosamine-6-sulfatase compare
AO353_02815 +0.4 2.1 transcriptional regulator compare
AO353_09770 +0.4 1.8 hypothetical protein compare
AO353_07785 +0.4 2.2 ABC transporter for Carnitine, permease component (from data) compare
AO353_19025 +0.4 3.3 acetyltransferase compare
AO353_27365 +0.4 1.5 hypothetical protein compare
AO353_02775 +0.4 1.5 3-methyladenine DNA glycosylase compare
AO353_20810 +0.4 0.9 hypothetical protein compare
AO353_13095 +0.4 1.5 flagellar motor protein MotB compare
AO353_15685 +0.4 1.8 formate dehydrogenase compare
AO353_28965 +0.4 1.7 hypothetical protein compare
AO353_22980 +0.4 1.9 hypothetical protein compare
AO353_08665 +0.4 2.8 ABC transporter substrate-binding protein compare
AO353_21905 +0.4 1.3 hypothetical protein compare
AO353_20625 +0.4 1.5 3-isopropylmalate dehydratase compare
AO353_13465 +0.4 2.2 hypothetical protein compare
AO353_23290 +0.4 1.9 cystathionine beta-synthase compare
AO353_18335 +0.4 1.3 hypothetical protein compare
AO353_21540 +0.4 1.5 type VI secretion protein compare
AO353_17015 +0.4 2.2 hypothetical protein compare
AO353_14015 +0.4 2.7 C4-dicarboxylate ABC transporter compare
AO353_09450 +0.4 1.5 type VI secretion protein compare
AO353_21470 +0.4 3.5 cation:proton antiporter compare
AO353_23160 +0.4 1.5 hydrolase compare
AO353_08620 +0.4 0.9 hypothetical protein compare
AO353_07595 +0.4 1.6 transcriptional regulator compare
AO353_27580 +0.4 1.5 hypothetical protein compare
AO353_17575 +0.4 2.7 hypothetical protein compare
AO353_19490 +0.4 1.7 Fis family transcriptional regulator compare
AO353_14340 +0.4 1.6 phospholipid-binding protein compare
AO353_23590 +0.4 0.9 ArsR family transcriptional regulator compare
AO353_08715 +0.4 1.9 ribonucleotide reductase compare
AO353_25060 +0.4 1.8 LysR family transcriptional regulator compare
AO353_13965 +0.4 1.9 large-conductance mechanosensitive channel compare
AO353_03715 +0.4 1.0 H-NS histone compare
AO353_16115 +0.4 2.8 transposase compare
AO353_19965 +0.4 1.3 phosphopantetheine-binding protein compare
AO353_02920 +0.4 1.3 serine recombinase compare
AO353_00115 +0.4 0.8 hypothetical protein compare
AO353_15665 +0.4 1.4 chemotaxis protein CheY compare
AO353_01900 +0.4 2.4 hypothetical protein compare
AO353_27190 +0.4 1.5 hypothetical protein compare
AO353_17935 +0.4 1.3 hypothetical protein compare
AO353_00140 +0.4 1.6 phage tail protein compare
AO353_02030 +0.4 1.6 hypothetical protein compare
AO353_03605 +0.4 0.6 FmdB family transcriptional regulator compare
AO353_02225 +0.4 1.3 LuxR family transcriptional regulator compare
AO353_09885 +0.4 1.0 transcriptional regulator PhoU compare
AO353_10510 +0.4 0.8 benzoate transporter compare
AO353_00350 +0.4 1.9 copper-binding protein compare
AO353_04965 +0.4 1.5 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_10860 +0.4 2.9 hypothetical protein compare
AO353_28080 +0.4 1.3 hypothetical protein compare
AO353_05740 +0.4 1.2 hypothetical protein compare
AO353_14930 +0.4 1.2 GntR family transcriptional regulator compare
AO353_24835 +0.4 2.2 acyl-CoA dehydrogenase compare
AO353_22010 +0.4 1.5 hypothetical protein compare
AO353_21580 +0.4 1.9 type VI secretion protein compare
AO353_08815 +0.4 2.4 flagellar basal body-associated protein FliL compare
AO353_05280 +0.4 1.0 4-carboxymuconolactone decarboxylase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Choline Lysine in Pseudomonas fluorescens FW300-N2E3

For stress Choline Lysine across organisms