Experiment set4IT079 for Pseudomonas fluorescens FW300-N1B4

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casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -3.6 -6.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1830 -3.1 -8.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3697 -3.0 -9.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1831 -2.9 -10.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2545 -2.9 -13.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2547 -2.9 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1307 -2.7 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2548 -2.7 -6.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1315 -2.7 -8.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2377 -2.5 -6.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2549 -2.5 -8.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2939 -2.3 -6.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2488 -2.3 -7.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1617 -2.2 -8.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2491 -2.2 -3.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2487 -2.2 -8.3 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1153 -2.1 -4.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_339 -2.0 -3.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3917 -2.0 -4.6 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2493 -1.9 -3.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3595 -1.8 -2.8 Flagellin protein FlaG compare
Pf1N1B4_3906 -1.8 -4.8 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2489 -1.8 -5.5 Biotin synthesis protein BioH compare
Pf1N1B4_683 -1.8 -4.9 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1906 -1.7 -4.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3833 -1.7 -7.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2401 -1.7 -3.2 Lipoprotein, putative compare
Pf1N1B4_1317 -1.7 -3.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_3985 -1.7 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_4107 -1.5 -2.9 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3990 -1.5 -4.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_4038 -1.5 -2.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2490 -1.4 -5.0 Biotin synthesis protein BioC compare
Pf1N1B4_629 -1.4 -2.4 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_2850 -1.4 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3038 -1.4 -3.6 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4523 -1.3 -2.6 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1 -1.3 -2.2 Colicin V production protein compare
Pf1N1B4_2858 -1.3 -7.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2854 -1.3 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_656 -1.3 -6.3 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_3518 -1.2 -2.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_3973 -1.2 -3.5 ABC-type spermidine/putrescine transport system, permease component I compare
Pf1N1B4_5720 -1.2 -2.2 hypothetical protein compare
Pf1N1B4_626 -1.2 -5.6 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_507 -1.2 -1.9 FIG00956448: hypothetical protein compare
Pf1N1B4_3279 -1.2 -2.7 putative membrane protein compare
Pf1N1B4_4481 -1.2 -2.5 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_1181 -1.2 -3.6 UPF0125 protein yfjF compare
Pf1N1B4_2227 -1.2 -2.2 FIG019278: hypothetical protein compare
Pf1N1B4_2272 -1.1 -3.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_35 -1.1 -2.3 hypothetical protein compare
Pf1N1B4_3356 -1.1 -2.0 Cyclic nucleotide-binding protein compare
Pf1N1B4_327 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_1458 -1.1 -5.9 Probable transcription regulator Mig-14 compare
Pf1N1B4_5560 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_1579 -1.1 -3.4 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_1434 -1.1 -5.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4039 -1.0 -4.4 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2209 -1.0 -5.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2859 -1.0 -7.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4301 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_652 -1.0 -5.9 Sensory box histidine kinase compare
Pf1N1B4_1837 -1.0 -1.8 Osmotically inducible protein C compare
Pf1N1B4_1052 -1.0 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_3751 -1.0 -1.6 FIG00953060: hypothetical protein compare
Pf1N1B4_3368 -0.9 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_1691 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_5860 -0.9 -1.8 Two-component response regulator compare
Pf1N1B4_617 -0.9 -1.7 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_4028 -0.9 -2.6 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2486 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_1570 -0.9 -2.3 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_219 -0.9 -3.0 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_3081 -0.9 -8.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2485 -0.9 -1.6 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_4799 -0.9 -1.8 Multidrug resistance protein B compare
Pf1N1B4_1126 -0.9 -2.3 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_3821 -0.9 -3.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf1N1B4_2421 -0.9 -2.0 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_3812 -0.9 -4.9 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_5906 -0.9 -2.4 Esterase/lipase compare
Pf1N1B4_3685 -0.9 -2.9 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_2940 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_1568 -0.9 -2.6 Twin-arginine translocation protein TatB compare
Pf1N1B4_1023 -0.9 -3.9 Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18) compare
Pf1N1B4_2709 -0.9 -2.8 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_1675 -0.9 -1.8 Transcriptional regulator compare
Pf1N1B4_5077 -0.9 -2.0 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_2674 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_886 -0.8 -1.4 FIG137478: Hypothetical protein compare
Pf1N1B4_758 -0.8 -2.4 Bacterioferritin compare
Pf1N1B4_5838 -0.8 -1.8 FIG00956589: hypothetical protein compare
Pf1N1B4_485 -0.8 -2.2 L-lysine permease compare
Pf1N1B4_3322 -0.8 -5.1 L-aspartate oxidase (EC 1.4.3.16) compare
Pf1N1B4_1402 -0.8 -2.1 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_3802 -0.8 -1.5 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_3709 -0.8 -2.4 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_2283 -0.8 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4195 -0.8 -2.6 Transcriptional regulator, TetR family compare
Pf1N1B4_74 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_5724 -0.8 -1.9 High-affinity iron permease compare
Pf1N1B4_1963 -0.8 -2.9 O-antigen export system permease protein RfbD compare
Pf1N1B4_175 -0.8 -1.3 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5249 -0.8 -2.2 Outer membrane protein A precursor compare
Pf1N1B4_2860 -0.8 -3.6 FIG00954153: hypothetical protein compare
Pf1N1B4_3290 -0.8 -2.1 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_4040 -0.8 -1.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_5383 -0.8 -5.6 hypothetical protein compare
Pf1N1B4_544 -0.8 -1.9 Small-conductance mechanosensitive channel compare
Pf1N1B4_34 -0.8 -1.2 Xanthine permease compare
Pf1N1B4_5737 -0.8 -2.1 Nitrate/nitrite transporter compare
Pf1N1B4_1059 -0.8 -1.9 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_4699 -0.8 -1.6 Multidrug translocase MdfA compare
Pf1N1B4_255 -0.8 -2.8 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf1N1B4_108 -0.8 -1.6 FIG00954456: hypothetical protein compare
Pf1N1B4_4437 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_2651 -0.8 -2.8 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_4249 -0.8 -2.4 transcriptional regulator, LuxR family compare
Pf1N1B4_5722 -0.8 -1.5 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4280 -0.8 -1.9 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf1N1B4_4051 -0.8 -2.2 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_1328 -0.8 -1.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_3506 -0.7 -3.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2173 -0.7 -1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3132 -0.7 -1.9 FIG121501: Prophage tail protein compare
Pf1N1B4_4494 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_4486 -0.7 -1.8 Outer membrane protein (porin) compare
Pf1N1B4_4517 -0.7 -1.8 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_127 -0.7 -2.0 FIG032225: Transcriptional regulator, LysR family compare
Pf1N1B4_5777 -0.7 -2.2 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_3498 -0.7 -1.4 FIG00953240: hypothetical protein compare
Pf1N1B4_3408 -0.7 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_4362 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_2568 -0.7 -1.7 Translation elongation factor Tu compare
Pf1N1B4_1024 -0.7 -2.8 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_475 -0.7 -3.0 ABC-type multidrug transport system, permease component compare
Pf1N1B4_4134 -0.7 -1.7 Na+ driven multidrug efflux pump compare
Pf1N1B4_4166 -0.7 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_237 -0.7 -1.7 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_3552 -0.7 -1.9 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf1N1B4_835 -0.7 -1.6 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_4612 -0.7 -1.3 FIG00954117: hypothetical protein compare
Pf1N1B4_2507 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_2878 -0.7 -4.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1636 -0.7 -1.1 FIG00954739: hypothetical protein compare
Pf1N1B4_5997 -0.7 -1.5 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4156 -0.7 -1.6 putative secreted protein compare
Pf1N1B4_344 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_204 -0.7 -2.0 FIG006220: Hypothetical MbtH-like protein compare
Pf1N1B4_2874 -0.7 -1.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2534 -0.7 -1.6 DnaJ-like protein DjlA compare
Pf1N1B4_5023 -0.7 -1.7 Alkylated DNA repair protein AlkB compare
Pf1N1B4_1358 -0.7 -2.0 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_1236 -0.7 -3.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1627 -0.7 -2.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1565 -0.7 -2.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5047 -0.7 -2.5 Integral membrane protein TerC compare
Pf1N1B4_4011 -0.7 -2.2 Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3) compare
Pf1N1B4_5346 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_672 -0.7 -1.8 FIG00955538: hypothetical protein compare
Pf1N1B4_5624 -0.7 -1.8 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_373 -0.7 -1.7 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_3687 -0.7 -1.4 FIG00953885: hypothetical protein compare
Pf1N1B4_72 -0.7 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_267 -0.7 -1.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_740 -0.7 -1.6 Leucyl-tRNA synthetase compare
Pf1N1B4_3692 -0.7 -1.6 Chaperone protein HtpG compare
Pf1N1B4_3855 -0.7 -1.9 Chromosome partition protein smc compare
Pf1N1B4_202 -0.7 -2.2 ABC transporter in pyoverdin gene cluster, permease component compare
Pf1N1B4_1463 -0.7 -3.5 hypothetical protein compare
Pf1N1B4_3407 -0.7 -2.3 Sterol desaturase, putative compare
Pf1N1B4_78 -0.6 -2.2 FIG00956937: hypothetical protein compare
Pf1N1B4_4392 -0.6 -2.0 MocE compare
Pf1N1B4_2969 -0.6 -4.7 ATPase, AFG1 family compare
Pf1N1B4_5659 -0.6 -4.6 NfuA Fe-S protein maturation compare
Pf1N1B4_3729 -0.6 -1.3 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_3168 -0.6 -1.6 AmpG permease compare
Pf1N1B4_1615 -0.6 -2.1 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_65 -0.6 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_5030 -0.6 -2.3 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_4897 -0.6 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_4870 -0.6 -1.3 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1234 -0.6 -2.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_616 -0.6 -1.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4041 -0.6 -1.6 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4102 -0.6 -1.9 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_2114 -0.6 -3.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_5682 -0.6 -1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_4962 -0.6 -1.8 C4-dicarboxylate transport protein compare
Pf1N1B4_1300 -0.6 -1.8 hypothetical protein compare
Pf1N1B4_3006 -0.6 -2.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_5446 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_875 -0.6 -1.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2060 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_1389 -0.6 -1.2 Lysine decarboxylase family compare
Pf1N1B4_2436 -0.6 -2.2 FIG00953563: hypothetical protein compare
Pf1N1B4_1149 -0.6 -2.5 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_883 -0.6 -1.0 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_5000 -0.6 -1.7 D-glycerate transporter (predicted) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source casamino acids across organisms