Experiment set4IT079 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_0.23_MOI_rep2

200 most important genes:

  gene name fitness t score description  
CSW01_02755 -5.1 -2.2 glutamyl-tRNA amidotransferase compare
CSW01_17595 -4.6 -1.0 TIGR02808 family protein compare
CSW01_06810 -4.6 -1.0 hypothetical protein compare
CSW01_19210 -4.5 -1.4 DUF3081 domain-containing protein compare
CSW01_00940 -4.5 -1.4 hypothetical protein compare
CSW01_18350 -4.0 -1.7 cell division protein DedD compare
CSW01_09720 -3.8 -1.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_12365 -3.7 -3.6 inorganic phosphate transporter compare
CSW01_09220 -3.6 -1.1 cyd operon protein YbgE compare
CSW01_11555 -3.5 -4.8 riboflavin synthase compare
CSW01_11730 -3.5 -3.0 2-dehydropantoate 2-reductase compare
CSW01_11560 -3.5 -5.3 riboflavin biosynthesis protein RibD compare
CSW01_14910 -3.4 -1.1 cold-shock protein compare
CSW01_04940 -3.4 -1.0 hypothetical protein compare
CSW01_00560 -3.4 -6.1 DNA polymerase I compare
CSW01_15425 -3.3 -1.0 DUF3265 domain-containing protein compare
CSW01_12005 -3.3 -4.0 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_06380 -3.2 -2.2 GTP cyclohydrolase II compare
CSW01_17585 -3.2 -1.0 periplasmic nitrate reductase electron transfer subunit compare
CSW01_03795 -3.2 -1.8 phosphate ABC transporter ATP-binding protein compare
CSW01_18730 -3.1 -1.8 DUF406 domain-containing protein compare
CSW01_10740 -3.0 -1.5 peptidase M15 compare
CSW01_03980 -3.0 -9.6 IMP dehydrogenase compare
CSW01_03410 -2.9 -3.0 polyribonucleotide nucleotidyltransferase compare
CSW01_16285 -2.9 -1.5 acetyltransferase compare
CSW01_11780 -2.9 -2.0 exodeoxyribonuclease V subunit beta compare
CSW01_04820 -2.8 -10.9 serine hydroxymethyltransferase compare
CSW01_14680 -2.7 -0.8 aminotransferase compare
CSW01_08730 -2.7 -2.3 phage-shock protein compare
CSW01_01490 -2.6 -4.2 Fis family transcriptional regulator compare
CSW01_13285 -2.5 -4.6 ribulose-phosphate 3-epimerase compare
CSW01_12320 -2.5 -4.5 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_13805 -2.5 -6.8 Hsp33 family molecular chaperone HslO compare
CSW01_03205 -2.5 -7.6 iron ABC transporter substrate-binding protein compare
CSW01_00095 -2.4 -2.4 hypothetical protein compare
CSW01_13420 -2.4 -3.3 elongation factor P--(R)-beta-lysine ligase compare
CSW01_05575 -2.4 -4.2 phosphate acetyltransferase compare
CSW01_18635 -2.4 -5.6 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_05265 -2.3 -1.4 methionine--tRNA ligase compare
CSW01_08565 -2.3 -1.5 hypothetical protein compare
CSW01_10265 -2.0 -5.9 c-type cytochrome biogenesis protein CcmF compare
CSW01_02970 -2.0 -7.3 glutamate--cysteine ligase compare
CSW01_13445 -2.0 -2.4 elongation factor P compare
CSW01_16590 -2.0 -0.9 N-acetyltransferase compare
CSW01_03210 -2.0 -10.3 iron ABC transporter permease compare
CSW01_02490 -2.0 -6.5 glutathione synthetase compare
CSW01_11670 -2.0 -1.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_05815 -1.9 -1.1 glutaredoxin compare
CSW01_01485 -1.9 -5.1 transcriptional regulator compare
CSW01_02875 -1.9 -5.5 DNA recombination/repair protein RecA compare
CSW01_01875 -1.9 -2.9 hypothetical protein compare
CSW01_17885 -1.9 -2.0 hypothetical protein compare
CSW01_10750 -1.8 -3.3 outer membrane protein assembly factor BamC compare
CSW01_14245 -1.8 -2.4 hypothetical protein compare
CSW01_10290 -1.8 -3.9 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_17835 -1.8 -1.9 hypothetical protein compare
CSW01_13450 -1.7 -2.1 EF-P beta-lysylation protein EpmB compare
CSW01_00380 -1.7 -1.2 hypothetical protein compare
CSW01_10285 -1.7 -1.9 heme exporter protein CcmB compare
CSW01_18705 -1.7 -3.0 biopolymer transporter exbD1 compare
CSW01_03695 -1.7 -4.8 ribosomal large subunit pseudouridine synthase D compare
CSW01_13635 -1.7 -6.8 thiol:disulfide interchange protein DsbD compare
CSW01_13305 -1.7 -1.7 shikimate kinase compare
CSW01_15810 -1.6 -2.0 hypothetical protein compare
CSW01_00025 -1.6 -0.8 membrane protein insertion efficiency factor YidD compare
CSW01_14100 -1.6 -1.9 hypothetical protein compare
CSW01_12255 -1.6 -2.1 flavodoxin FldB compare
CSW01_05730 -1.6 -8.6 inosine/guanosine kinase compare
CSW01_16630 -1.6 -1.0 DUF645 domain-containing protein compare
CSW01_16130 -1.6 -0.7 acetyltransferase compare
CSW01_15730 -1.6 -0.7 VOC family protein compare
CSW01_12885 -1.6 -5.8 fructose 1,6-bisphosphatase compare
CSW01_12680 -1.5 -4.4 cytosol aminopeptidase compare
CSW01_02530 -1.5 -4.3 D-erythrose-4-phosphate dehydrogenase compare
CSW01_08700 -1.5 -3.0 DUF2498 domain-containing protein compare
CSW01_07500 -1.5 -0.8 DUF2835 domain-containing protein compare
CSW01_12735 -1.5 -4.4 RidA family protein compare
CSW01_12130 -1.5 -1.7 DUF721 domain-containing protein compare
CSW01_09420 -1.5 -1.8 DUF2062 domain-containing protein compare
CSW01_05580 -1.5 -4.2 acetate kinase compare
CSW01_03215 -1.5 -6.8 ABC transporter ATP-binding protein compare
CSW01_10170 -1.5 -1.5 MarC family protein compare
CSW01_03325 -1.5 -2.5 porin compare
CSW01_10380 -1.5 -3.1 iron transporter FeoC compare
CSW01_08625 -1.4 -3.8 chromosome partition protein MukE compare
CSW01_11920 -1.4 -4.6 NupC/NupG family nucleoside CNT transporter compare
CSW01_00870 -1.4 -2.6 cytochrome c5 family protein compare
CSW01_02570 -1.4 -1.7 hypothetical protein compare
CSW01_06840 -1.3 -2.7 amino acid ABC transporter ATP-binding protein compare
CSW01_10270 -1.3 -2.4 cytochrome c-type biogenesis protein CcmE compare
CSW01_13810 -1.3 -4.3 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_09525 -1.3 -0.9 DNA translocase FtsK compare
CSW01_07175 -1.3 -3.6 DUF2987 domain-containing protein compare
CSW01_17495 -1.3 -4.0 glycerol-3-phosphate dehydrogenase compare
CSW01_16690 -1.3 -1.1 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_00460 -1.2 -2.5 twin-arginine translocase subunit TatA compare
CSW01_10630 -1.2 -2.2 flagella biosynthesis chaperone FliJ compare
CSW01_13415 -1.2 -1.7 rhodanese-like domain-containing protein compare
CSW01_00650 -1.2 -4.1 tyrosine recombinase XerC compare
CSW01_04390 -1.2 -1.6 outer membrane protein assembly factor BamE compare
CSW01_17605 -1.2 -2.6 DNA-binding response regulator compare
CSW01_01820 -1.2 -4.3 N-acetylmuramoyl-L-alanine amidase compare
CSW01_06825 -1.2 -0.9 acylphosphatase compare
CSW01_11785 -1.2 -2.2 exonuclease V subunit gamma compare
CSW01_02020 -1.2 -1.3 phosphoadenosine phosphosulfate reductase compare
CSW01_00170 -1.1 -3.0 thiol:disulfide interchange protein DsbA compare
CSW01_14085 -1.1 -1.4 transcriptional regulator compare
CSW01_00015 -1.1 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_10375 -1.1 -1.3 HIT family protein compare
CSW01_13670 -1.1 -1.2 DNA-directed RNA polymerase subunit omega compare
CSW01_18525 -1.1 -1.1 integrase compare
CSW01_03045 -1.1 -1.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CSW01_05800 -1.1 -1.2 ATP-dependent Clp protease adaptor ClpS compare
CSW01_03880 -1.1 -0.7 HTH-type transcriptional regulator IscR compare
CSW01_00470 -1.1 -1.7 twin-arginine translocase subunit TatC compare
CSW01_07145 -1.1 -1.4 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_10445 -1.1 -1.1 succinate dehydrogenase, hydrophobic membrane anchor protein compare
CSW01_01850 -1.1 -2.3 protease modulator HflC compare
CSW01_00500 -1.1 -6.5 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_07210 -1.1 -1.8 hypothetical protein compare
CSW01_16835 -1.1 -3.1 catabolite repressor/activator compare
CSW01_10875 -1.1 -3.4 redox-regulated ATPase YchF compare
CSW01_06790 -1.1 -2.4 maleylacetoacetate isomerase compare
CSW01_10600 -1.1 -1.4 flagellar biosynthetic protein FliO compare
CSW01_10190 -1.0 -2.2 nucleoid-associated protein compare
CSW01_10280 -1.0 -2.7 heme exporter protein C compare
CSW01_10340 -1.0 -2.0 MinD/ParA family protein compare
CSW01_11195 -1.0 -2.0 flagellar L-ring protein compare
CSW01_07915 -1.0 -2.0 glycine--lipid A transferase AlmG compare
CSW01_08055 -1.0 -1.9 amino acid ABC transporter substrate-binding protein compare
CSW01_04580 -1.0 -3.4 flagellar motor protein MotB compare
CSW01_01125 -1.0 -4.3 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_19600 -1.0 -2.5 hypothetical protein compare
CSW01_14810 -1.0 -1.7 tryptophanase leader peptide compare
CSW01_10255 -1.0 -0.9 cytochrome c-type biogenesis protein CcmH compare
CSW01_16205 -1.0 -1.5 DUF3465 domain-containing protein compare
CSW01_17325 -1.0 -2.7 transaldolase compare
CSW01_09465 -1.0 -2.9 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_11090 -1.0 -4.0 XRE family transcriptional regulator compare
CSW01_00295 -1.0 -1.3 hypothetical protein compare
CSW01_05985 -1.0 -2.8 thioredoxin-disulfide reductase compare
CSW01_10020 -1.0 -4.6 ROK family protein compare
CSW01_05065 -1.0 -3.3 N-acetylglucosamine repressor compare
CSW01_15705 -1.0 -1.4 DUF3265 domain-containing protein compare
CSW01_06015 -1.0 -3.1 NAD-dependent malic enzyme compare
CSW01_02175 -1.0 -3.4 MSHA biogenesis protein MshP compare
CSW01_04900 -1.0 -3.6 magnesium and cobalt efflux protein CorC compare
CSW01_09240 -0.9 -2.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_11225 -0.9 -3.3 flagellar basal body rod protein FlgB compare
CSW01_07205 -0.9 -2.6 copper-translocating P-type ATPase compare
CSW01_01015 -0.9 -4.7 DNA helicase II compare
CSW01_06860 -0.9 -2.0 siroheme synthase compare
CSW01_15430 -0.9 -0.9 hypothetical protein compare
CSW01_04930 -0.9 -3.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
CSW01_02450 -0.9 -3.6 pyrroline-5-carboxylate reductase compare
CSW01_01980 -0.9 -3.7 transcriptional regulator Zur compare
CSW01_07085 -0.9 -2.6 carboxypeptidase M32 compare
CSW01_09245 -0.9 -2.3 Holliday junction branch migration protein RuvA compare
CSW01_05490 -0.9 -3.1 L-threonylcarbamoyladenylate synthase compare
CSW01_12225 -0.9 -1.5 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
CSW01_09280 -0.9 -2.0 DUF2057 domain-containing protein compare
CSW01_04420 -0.9 -1.4 prepilin-type cleavage/methylation domain-containing protein compare
CSW01_01240 -0.9 -3.7 lipopolysaccharide biosynthesis protein compare
CSW01_01535 -0.9 -2.3 hypothetical protein compare
CSW01_11145 -0.9 -2.1 hypothetical protein compare
CSW01_03915 -0.9 -0.9 Fe-S assembly protein IscX compare
CSW01_04150 -0.9 -3.5 RNA methyltransferase compare
CSW01_06785 -0.9 -3.6 FAA hydrolase family protein compare
CSW01_15205 -0.9 -3.0 HTH-type transcriptional regulator UlaR compare
CSW01_08705 -0.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_12610 -0.9 -1.3 3-isopropylmalate dehydratase small subunit compare
CSW01_06395 -0.9 -3.6 iron-regulated protein A compare
CSW01_18270 -0.9 -0.8 L-ectoine synthase compare
CSW01_14540 -0.9 -1.7 hypothetical protein compare
CSW01_12120 -0.9 -2.2 8-oxo-dGTP diphosphatase MutT compare
CSW01_03030 -0.9 -3.9 cell division protein ZapE compare
CSW01_15870 -0.9 -0.7 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_18185 -0.8 -1.7 DEAD/DEAH box family ATP-dependent RNA helicase compare
CSW01_05315 -0.8 -1.4 RNA polymerase subunit sigma compare
CSW01_13480 -0.8 -1.7 DUF805 domain-containing protein compare
CSW01_00385 -0.8 -1.9 transcriptional regulator AsnC compare
CSW01_11215 -0.8 -2.1 flagellar hook assembly protein FlgD compare
CSW01_02455 -0.8 -2.8 YggS family pyridoxal phosphate enzyme compare
CSW01_18435 -0.8 -1.5 hypothetical protein compare
CSW01_15480 -0.8 -0.8 DUF645 domain-containing protein compare
CSW01_05670 -0.8 -1.8 protease HtpX compare
CSW01_02105 -0.8 -4.9 MSHA biogenesis protein MshI compare
CSW01_04080 -0.8 -1.7 hypothetical protein compare
CSW01_05845 -0.8 -1.8 HDOD domain-containing protein compare
CSW01_06970 -0.8 -0.8 DUF2256 domain-containing protein compare
CSW01_03785 -0.8 -1.5 phosphate ABC transporter permease compare
CSW01_02460 -0.8 -3.6 type IV pili twitching motility protein PilT compare
CSW01_09440 -0.8 -1.9 PilZ domain-containing protein compare
CSW01_13155 -0.8 -4.5 ribonuclease R compare
CSW01_02205 -0.8 -3.2 ribonuclease E/G compare
CSW01_07330 -0.8 -1.5 colonization factor compare
CSW01_07235 -0.8 -1.4 hypothetical protein compare
CSW01_08630 -0.8 -2.0 condensin subunit F compare
CSW01_08720 -0.8 -0.9 arginyltransferase compare
CSW01_19605 -0.8 -2.3 short chain dehydrogenase compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms