Experiment set4IT079 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

D-Glucose 20 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_02683 +1.7 2.5 xanthine dehydrogenase accessory factor compare
H281DRAFT_06120 +1.5 1.9 hypothetical protein compare
H281DRAFT_02791 +1.4 2.2 apolipoprotein D and lipocalin family protein compare
H281DRAFT_01184 +1.4 1.8 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_04390 +1.3 9.3 ATP-binding cassette, subfamily B compare
H281DRAFT_02007 +1.3 10.1 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_04857 +1.2 2.1 hypothetical protein compare
H281DRAFT_05778 +1.1 2.4 flagellar motor switch protein FliN/FliY compare
H281DRAFT_04391 +1.1 8.5 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05438 +1.1 2.8 transcriptional regulator, IclR family compare
H281DRAFT_04781 +1.1 1.8 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_05376 +1.0 2.7 hypothetical protein compare
H281DRAFT_01310 +1.0 3.8 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_03502 +1.0 1.9 2-aminoethylphosphonate transport system permease protein compare
H281DRAFT_00285 +1.0 2.9 PhnB protein compare
H281DRAFT_03159 +1.0 1.5 hypothetical protein compare
H281DRAFT_01880 +1.0 1.9 two component transcriptional regulator, LuxR family compare
H281DRAFT_05770 +1.0 6.6 flagellar protein FlgJ compare
H281DRAFT_05005 +1.0 2.0 type III secretion protein HrpB1 compare
H281DRAFT_03440 +0.9 1.5 PAP2 superfamily protein compare
H281DRAFT_02503 +0.9 2.1 Peroxiredoxin compare
H281DRAFT_03076 +0.9 2.7 NitT/TauT family transport system substrate-binding protein compare
H281DRAFT_02702 +0.9 1.6 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_01305 +0.9 2.5 hypothetical protein compare
H281DRAFT_02736 +0.8 2.4 uncharacterized peroxidase-related enzyme compare
H281DRAFT_02193 +0.8 0.9 hypothetical protein compare
H281DRAFT_01474 +0.8 1.0 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01584 +0.8 1.4 enamidase compare
H281DRAFT_05753 +0.8 4.6 flagellar biosynthesis protein FlhA compare
H281DRAFT_05399 +0.8 2.4 isoquinoline 1-oxidoreductase, alpha subunit compare
H281DRAFT_01701 +0.8 2.4 hypothetical protein compare
H281DRAFT_03226 +0.8 1.2 mannose-binding protein /fructose-binding protein /ribose-binding protein compare
H281DRAFT_01502 +0.8 2.3 Protein of unknown function (DUF2917) compare
H281DRAFT_04997 +0.8 1.3 AraC-type DNA-binding protein compare
H281DRAFT_00386 +0.8 1.8 hypothetical protein compare
H281DRAFT_00470 +0.8 5.0 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_03147 +0.8 1.4 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_01311 +0.8 1.6 fructose-bisphosphate aldolase compare
H281DRAFT_04628 +0.8 2.1 FdhD protein compare
H281DRAFT_00261 +0.8 2.0 Rubredoxin compare
H281DRAFT_01457 +0.8 1.7 hypothetical protein compare
H281DRAFT_04875 +0.8 2.3 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_05403 +0.8 1.5 amino acid ABC transporter membrane protein 1, PAAT family compare
H281DRAFT_05641 +0.8 3.4 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
H281DRAFT_04735 +0.8 1.0 Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family compare
H281DRAFT_00487 +0.8 1.3 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_06135 +0.8 1.4 hypothetical protein compare
H281DRAFT_02741 +0.8 1.6 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_06253 +0.8 4.3 cell division protein ZapD compare
H281DRAFT_06355 +0.8 2.0 4-oxalomesaconate hydratase compare
H281DRAFT_00066 +0.8 1.8 hypothetical protein compare
H281DRAFT_05754 +0.8 3.8 flagellar biosynthesis protein FlhF compare
H281DRAFT_06555 +0.7 1.9 hypothetical protein compare
H281DRAFT_02864 +0.7 2.4 precorrin-8X methylmutase compare
H281DRAFT_00152 +0.7 1.2 Protein of unknown function (DUF3460) compare
H281DRAFT_03061 +0.7 2.5 hypothetical protein compare
H281DRAFT_05756 +0.7 2.3 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_02481 +0.7 3.0 glycine betaine/proline transport system substrate-binding protein compare
H281DRAFT_02532 +0.7 0.8 Sugar phosphate isomerase/epimerase compare
H281DRAFT_03192 +0.7 1.7 D-methionine transport system substrate-binding protein compare
H281DRAFT_03460 +0.7 0.9 Protein of unknown function (DUF2950) compare
H281DRAFT_02591 +0.7 2.7 hypothetical protein compare
H281DRAFT_04400 +0.7 5.3 membrane-bound lytic murein transglycosylase D compare
H281DRAFT_01231 +0.7 1.6 hypothetical protein compare
H281DRAFT_03733 +0.7 1.2 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_05483 +0.7 1.5 protein of unknown function (DUF1840) compare
H281DRAFT_04100 +0.7 1.6 Protein of unknown function (DUF2917) compare
H281DRAFT_05090 +0.7 1.2 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_05781 +0.7 2.7 flagellar hook-length control protein FliK compare
H281DRAFT_02920 +0.7 2.3 sodium/proton antiporter, CPA1 family compare
H281DRAFT_01223 +0.7 2.0 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_00298 +0.7 1.8 hypothetical protein compare
H281DRAFT_01095 +0.7 1.1 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_03307 +0.7 2.3 Cytochrome c oxidase assembly factor CtaG compare
H281DRAFT_00722 +0.7 1.1 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_04218 +0.7 1.6 hypothetical protein compare
H281DRAFT_01390 +0.7 1.1 hypothetical protein compare
H281DRAFT_05289 +0.7 1.6 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_01721 +0.7 1.4 zinc-binding alcohol dehydrogenase family protein compare
H281DRAFT_03154 +0.7 1.2 two-component system, NarL family, sensor kinase compare
H281DRAFT_04498 +0.7 3.7 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family compare
H281DRAFT_00201 +0.7 1.3 hypothetical protein compare
H281DRAFT_00875 +0.7 2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03256 +0.6 1.7 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase compare
H281DRAFT_03883 +0.6 1.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_02618 +0.6 2.5 transcriptional regulator, LysR family compare
H281DRAFT_03069 +0.6 1.0 Uncharacterized conserved protein compare
H281DRAFT_03849 +0.6 1.1 protein of unknown function (DUF4863) compare
H281DRAFT_05763 +0.6 3.6 flagellar basal-body rod protein FlgC compare
H281DRAFT_03739 +0.6 2.6 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_02003 +0.6 2.2 Rhodanese-related sulfurtransferase compare
H281DRAFT_05901 +0.6 1.3 Cupin domain-containing protein compare
H281DRAFT_03058 +0.6 1.6 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_00855 +0.6 1.7 SSU ribosomal protein S12P methylthiotransferase compare
H281DRAFT_00848 +0.6 1.2 ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) compare
H281DRAFT_05322 +0.6 2.1 gluconolactonase (EC 3.1.1.17) compare
H281DRAFT_01986 +0.6 3.1 cytochrome c oxidase assembly protein subunit 15 compare
H281DRAFT_01829 +0.6 2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_01061 +0.6 1.5 hypothetical protein compare
H281DRAFT_04189 +0.6 2.2 pyruvate kinase compare
H281DRAFT_00888 +0.6 1.3 phytoene synthase compare
H281DRAFT_01463 +0.6 1.4 Steroid 5-alpha reductase family enzyme compare
H281DRAFT_02754 +0.6 2.0 Glucose/arabinose dehydrogenase, beta-propeller fold compare
H281DRAFT_02936 +0.6 3.1 nitrilase compare
H281DRAFT_04773 +0.6 1.3 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_02581 +0.6 0.8 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05540 +0.6 1.8 transcriptional regulator, LacI family compare
H281DRAFT_03728 +0.6 1.3 Uncharacterized conserved protein, DUF1697 family compare
H281DRAFT_01436 +0.6 1.1 NTE family protein compare
H281DRAFT_01534 +0.6 1.9 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase compare
H281DRAFT_02781 +0.6 2.0 Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains compare
H281DRAFT_01151 +0.6 2.4 ceramide glucosyltransferase compare
H281DRAFT_06177 +0.6 3.6 hypothetical protein compare
H281DRAFT_01906 +0.6 1.9 cytochrome c oxidase subunit 2 compare
H281DRAFT_03771 +0.6 1.8 hypothetical protein compare
H281DRAFT_06376 +0.6 1.9 transcriptional regulator, LysR family compare
H281DRAFT_02148 +0.6 1.8 cytochrome c compare
H281DRAFT_05767 +0.6 2.0 flagellar basal-body rod protein FlgG compare
H281DRAFT_00812 +0.6 1.4 molybdopterin molybdotransferase compare
H281DRAFT_03796 +0.6 2.2 protein of unknown function (DUF4148) compare
H281DRAFT_06285 +0.6 1.4 3-dehydroquinate dehydratase compare
H281DRAFT_04431 +0.6 2.2 Membrane-bound metallopeptidase compare
H281DRAFT_05737 +0.6 1.3 flagellar transcriptional activator FlhD compare
H281DRAFT_02058 +0.6 0.9 cholesterol transport system auxiliary component compare
H281DRAFT_00731 +0.6 1.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05945 +0.6 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04958 +0.6 1.6 glutamate racemase compare
H281DRAFT_01403 +0.6 1.7 hypothetical protein compare
H281DRAFT_03986 +0.6 2.5 Putative Ca2+/H+ antiporter, TMEM165/GDT1 family compare
H281DRAFT_02579 +0.6 1.3 maleylacetate reductase compare
H281DRAFT_02813 +0.6 1.1 Uncharacterized protein conserved in bacteria compare
H281DRAFT_02508 +0.6 1.2 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01270 +0.6 1.6 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_05762 +0.6 1.5 flagellar basal-body rod protein FlgB compare
H281DRAFT_03428 +0.6 0.9 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_06069 +0.6 1.9 tRNA pseudouridine38-40 synthase compare
H281DRAFT_06399 +0.6 1.8 transcriptional regulator, GntR family compare
H281DRAFT_01486 +0.6 1.4 hypothetical protein compare
H281DRAFT_03564 +0.6 2.1 2-keto-4-pentenoate hydratase compare
H281DRAFT_01656 +0.6 0.9 hypothetical protein compare
H281DRAFT_05752 +0.6 3.4 flagellar biosynthetic protein FlhB compare
H281DRAFT_05643 +0.6 2.9 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
H281DRAFT_04775 +0.6 2.3 tyrosine-protein kinase Etk/Wzc compare
H281DRAFT_06419 +0.6 0.9 putative toxin-antitoxin system antitoxin component, TIGR02293 family compare
H281DRAFT_02693 +0.6 1.5 transcriptional regulator, DeoR family compare
H281DRAFT_01246 +0.6 0.8 hypothetical protein compare
H281DRAFT_05012 +0.6 1.3 hypothetical protein compare
H281DRAFT_00648 +0.6 1.3 Uncharacterized conserved protein YgbK, DUF1537 family compare
H281DRAFT_02102 +0.6 2.2 Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC compare
H281DRAFT_01441 +0.6 0.8 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_05323 +0.6 0.9 hypothetical protein compare
H281DRAFT_05952 +0.6 2.0 transcriptional regulator, LysR family compare
H281DRAFT_06308 +0.6 1.6 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
H281DRAFT_05769 +0.6 3.5 flagellar P-ring protein precursor FlgI compare
H281DRAFT_01812 +0.6 1.8 Short-chain dehydrogenase compare
H281DRAFT_01801 +0.6 2.6 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_00927 +0.6 2.4 UPF0755 protein compare
H281DRAFT_03433 +0.6 2.5 Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain compare
H281DRAFT_03023 +0.6 0.7 Protein of unknown function (DUF2866) compare
H281DRAFT_01595 +0.6 1.8 3-carboxy-cis,cis-muconate cycloisomerase compare
H281DRAFT_05977 +0.6 1.2 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_00377 +0.6 1.1 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_01290 +0.6 1.5 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
H281DRAFT_01767 +0.6 0.8 hypothetical protein compare
H281DRAFT_06567 +0.5 0.7 hypothetical protein compare
H281DRAFT_01464 +0.5 0.9 Anti-sigma-K factor RskA compare
H281DRAFT_06502 +0.5 1.5 transcriptional regulator, LysR family compare
H281DRAFT_04499 +0.5 4.8 GTP pyrophosphokinase compare
H281DRAFT_01215 +0.5 1.6 hypothetical protein compare
H281DRAFT_01105 +0.5 1.8 transcriptional regulator, AraC family compare
H281DRAFT_05159 +0.5 1.0 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_06002 +0.5 2.1 NADPH:quinone reductase compare
H281DRAFT_05946 +0.5 2.3 monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) compare
H281DRAFT_05775 +0.5 2.5 flagellar biosynthetic protein FliQ compare
H281DRAFT_06322 +0.5 1.6 LPS-assembly lipoprotein compare
H281DRAFT_04786 +0.5 2.3 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_06529 +0.5 2.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_00554 +0.5 1.6 DUF971 family protein compare
H281DRAFT_03695 +0.5 2.7 glutathione S-transferase compare
H281DRAFT_00039 +0.5 1.8 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
H281DRAFT_03837 +0.5 1.5 hypothetical protein compare
H281DRAFT_03320 +0.5 1.6 Uncharacterized conserved protein compare
H281DRAFT_03860 +0.5 1.6 hypothetical protein compare
H281DRAFT_06010 +0.5 2.0 hypothetical protein compare
H281DRAFT_03717 +0.5 1.0 Rhodanese-related sulfurtransferase compare
H281DRAFT_01024 +0.5 2.1 hypothetical protein compare
H281DRAFT_03274 +0.5 1.0 hypothetical protein compare
H281DRAFT_05285 +0.5 2.0 Threonine/homoserine efflux transporter RhtA compare
H281DRAFT_00123 +0.5 1.9 aminopeptidase A. Metallo peptidase. MEROPS family M17 compare
H281DRAFT_03451 +0.5 1.8 ABC-2 type transport system ATP-binding protein compare
H281DRAFT_06036 +0.5 2.5 Membrane-associated phospholipid phosphatase compare
H281DRAFT_01214 +0.5 2.4 Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains compare
H281DRAFT_00057 +0.5 1.7 succinate semialdehyde dehydrogenase compare
H281DRAFT_03473 +0.5 1.2 hypothetical protein compare
H281DRAFT_02573 +0.5 1.6 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_05765 +0.5 3.7 flagellar hook protein FlgE compare
H281DRAFT_01837 +0.5 1.0 hypothetical protein compare
H281DRAFT_05400 +0.5 2.3 isoquinoline 1-oxidoreductase, beta subunit compare
H281DRAFT_03094 +0.5 0.7 transcriptional regulator, MarR family compare
H281DRAFT_00974 +0.5 2.1 L-alanine-DL-glutamate epimerase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source D-Glucose across organisms