Experiment set4IT078 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with 1-ethyl-3-methylimidazolium chloride 170 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.8 -4.4 peroxidase compare
AO353_12990 -3.7 -5.6 multidrug DMT transporter conserved
AO353_06040 -3.2 -3.1 exodeoxyribonuclease V subunit alpha compare
AO353_12995 -3.1 -6.3 LysR family transcriptional regulator compare
AO353_12500 -3.1 -2.1 shikimate kinase compare
AO353_20565 -2.6 -2.6 tRNA-Ala compare
AO353_14940 -2.6 -3.9 malate:quinone oxidoreductase compare
AO353_02945 -2.6 -8.8 magnesium transporter compare
AO353_12115 -2.5 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03795 -2.4 -4.5 fumarate hydratase compare
AO353_09560 -2.3 -2.3 type VI secretion protein compare
AO353_18540 -2.3 -3.6 pseudouridine synthase compare
AO353_18480 -2.3 -13.8 potassium transporter TrkH compare
AO353_10930 -2.3 -7.9 DNA polymerase I compare
AO353_16805 -2.2 -6.3 recombinase RecA compare
AO353_12090 -2.2 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_01980 -2.2 -12.3 NAD-dependent dehydratase compare
AO353_09240 -2.1 -2.9 acetylglutamate kinase compare
AO353_10625 -2.1 -13.0 potassium transporter peripheral membrane component compare
AO353_11730 -1.9 -8.6 glutamate--cysteine ligase compare
AO353_09320 -1.9 -9.1 ATP-dependent DNA helicase RecG compare
AO353_08880 -1.9 -2.5 exopolyphosphatase compare
AO353_05690 -1.9 -4.0 SsrA-binding protein compare
AO353_07355 -1.9 -5.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03580 -1.9 -4.4 ATP-dependent DNA helicase RuvB compare
AO353_15185 -1.9 -4.5 ATPase compare
AO353_00825 -1.9 -4.6 porin compare
AO353_07315 -1.9 -3.3 rRNA methyltransferase compare
AO353_20185 -1.9 -6.4 DNA-binding protein compare
AO353_27650 -1.8 -5.0 cell division protein FtsK compare
AO353_13140 -1.8 -5.1 tRNA dimethylallyltransferase compare
AO353_08980 -1.8 -3.7 heme biosynthesis operon protein HemX compare
AO353_00430 -1.7 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_11850 -1.7 -4.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_04565 -1.6 -5.5 nucleoid-associated protein compare
AO353_06455 -1.6 -3.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_05440 -1.6 -8.1 glycine/betaine ABC transporter ATP-binding protein conserved
AO353_09315 -1.6 -8.7 LysR family transcriptional regulator compare
AO353_12935 -1.6 -3.6 glycosyltransferase compare
AO353_09000 -1.6 -4.7 argininosuccinate lyase compare
AO353_07645 -1.6 -2.3 sarcosine oxidase subunit gamma compare
AO353_06850 -1.6 -4.4 MFS transporter compare
AO353_11770 -1.6 -2.3 molecular chaperone Hsp33 compare
AO353_01975 -1.6 -7.2 glycosyl transferase compare
AO353_03590 -1.5 -4.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_14400 -1.5 -4.0 Fis family transcriptional regulator compare
AO353_27500 -1.5 -2.3 hypothetical protein compare
AO353_07075 -1.5 -4.9 elongation factor Tu compare
AO353_19825 -1.5 -7.1 shikimate dehydrogenase compare
AO353_05430 -1.5 -8.8 glycine/betaine ABC transporter substrate-binding protein conserved
AO353_14255 -1.5 -10.1 NADH dehydrogenase conserved
AO353_02250 -1.5 -2.9 chorismate synthase compare
AO353_06045 -1.5 -6.3 exodeoxyribonuclease V subunit beta compare
AO353_09250 -1.5 -3.0 exodeoxyribonuclease III compare
AO353_19250 -1.4 -2.6 molybdenum cofactor guanylyltransferase compare
AO353_16940 -1.4 -5.1 deoxycytidine triphosphate deaminase compare
AO353_22700 -1.4 -2.8 LexA family transcriptional regulator compare
AO353_13130 -1.4 -3.4 N-acetylmuramoyl-L-alanine amidase compare
AO353_08685 -1.4 -6.4 N-acetylglutamate synthase compare
AO353_28945 -1.4 -2.7 potassium-transporting ATPase subunit B compare
AO353_03420 -1.4 -4.0 phosphogluconate dehydratase compare
AO353_03360 -1.4 -6.6 glucose-6-phosphate dehydrogenase compare
AO353_13155 -1.4 -3.7 hypothetical protein compare
AO353_07155 -1.4 -5.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00510 -1.4 -4.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_15900 -1.4 -2.2 GTP-binding protein compare
AO353_02685 -1.4 -3.4 phosphoribosylglycinamide formyltransferase compare
AO353_06050 -1.3 -5.3 exodeoxyribonuclease V subunit gamma compare
AO353_08895 -1.3 -5.7 hypothetical protein compare
AO353_20170 -1.3 -4.6 trigger factor compare
AO353_17640 -1.3 -2.3 serine peptidase compare
AO353_10710 -1.3 -4.4 tryptophan synthase subunit beta compare
AO353_13100 -1.3 -2.0 GTPase RsgA compare
AO353_00660 -1.3 -2.5 transcriptional regulator compare
AO353_08775 -1.3 -2.2 cell division protein ZapA compare
AO353_28380 -1.2 -3.5 GntR family transcriptional regulator compare
AO353_04175 -1.2 -4.2 glycerol uptake facilitator GlpF compare
AO353_05435 -1.2 -5.7 choline ABC transporter permease compare
AO353_15905 -1.2 -5.0 outer membrane protein assembly factor BamB compare
AO353_09030 -1.2 -1.3 iron donor protein CyaY compare
AO353_10630 -1.2 -3.6 16S rRNA methyltransferase compare
AO353_00750 -1.2 -3.6 GntR family transcriptional regulator compare
AO353_14740 -1.2 -2.9 GTP-binding protein compare
AO353_00505 -1.2 -3.3 3-ketoacyl-CoA thiolase compare
AO353_10670 -1.2 -5.2 shikimate dehydrogenase compare
AO353_03945 -1.2 -3.2 hypothetical protein compare
AO353_25405 -1.2 -4.0 molybdenum cofactor biosynthesis protein B compare
AO353_04190 -1.2 -2.1 glycerol-3-phosphate dehydrogenase compare
AO353_18560 -1.2 -2.3 class I peptide chain release factor compare
AO353_26070 -1.2 -2.6 hypothetical protein compare
AO353_02300 -1.1 -1.8 MarR family transcriptional regulator compare
AO353_15465 -1.1 -4.8 cytochrome C oxidase compare
AO353_02975 -1.1 -2.7 aspartate kinase compare
AO353_15250 -1.1 -2.8 cytochrome B compare
AO353_04105 -1.1 -5.9 argininosuccinate synthase compare
AO353_17675 -1.1 -4.5 hypothetical protein compare
AO353_01410 -1.1 -2.6 ribonuclease E compare
AO353_03615 -1.1 -2.7 cold-shock protein compare
AO353_05425 -1.1 -3.6 glycine/betaine ABC transporter permease compare
AO353_17885 -1.1 -1.8 hypothetical protein compare
AO353_08015 -1.1 -5.3 5,10-methylenetetrahydrofolate reductase compare
AO353_27865 -1.1 -7.3 hypothetical protein compare
AO353_08165 -1.1 -2.5 pyrroline-5-carboxylate reductase compare
AO353_15480 -1.1 -1.6 hypothetical protein compare
AO353_02000 -1.1 -2.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_07140 -1.1 -8.4 peptidase M23 compare
AO353_08110 -1.1 -4.3 glutathione synthetase compare
AO353_01805 -1.1 -3.5 hypothetical protein compare
AO353_02005 -1.0 -1.4 hypothetical protein compare
AO353_13225 -1.0 -2.6 50S ribosomal protein L9 compare
AO353_03585 -1.0 -1.8 ATP-dependent DNA helicase RuvA compare
AO353_03660 -1.0 -3.1 hypothetical protein compare
AO353_10055 -1.0 -6.9 DNA helicase II compare
AO353_12710 -1.0 -1.6 thioredoxin compare
AO353_03520 -1.0 -2.5 hypothetical protein compare
AO353_06525 -1.0 -2.3 dehydratase compare
AO353_02810 -1.0 -4.7 histidine kinase compare
AO353_08115 -1.0 -4.2 energy transducer TonB compare
AO353_14495 -0.9 -6.1 acetolactate synthase 3 catalytic subunit compare
AO353_09040 -0.9 -1.4 diaminopimelate epimerase compare
AO353_23620 -0.9 -1.4 hypothetical protein compare
AO353_04365 -0.9 -3.4 recombinase XerD compare
AO353_00845 -0.9 -4.9 CmaX protein compare
AO353_08245 -0.9 -2.6 cell division ATP-binding protein FtsE compare
AO353_09050 -0.9 -2.4 recombinase XerC compare
AO353_28035 -0.9 -3.5 hypothetical protein compare
AO353_07515 -0.9 -1.3 transporter compare
AO353_08975 -0.9 -4.0 heme biosynthesis protein HemY compare
AO353_00835 -0.9 -3.7 transporter compare
AO353_21625 -0.9 -1.9 Fe/S biogenesis protein NfuA compare
AO353_15470 -0.9 -6.3 protoheme IX farnesyltransferase compare
AO353_01915 -0.9 -1.1 GlcG protein compare
AO353_01970 -0.9 -5.7 hypothetical protein compare
AO353_03275 -0.9 -1.6 LysR family transcriptional regulator compare
AO353_17290 -0.9 -3.9 multidrug transporter compare
AO353_16530 -0.9 -1.2 ribonuclease HII compare
AO353_13640 -0.9 -2.8 histidine kinase compare
AO353_10705 -0.9 -2.9 tryptophan synthase subunit alpha compare
AO353_12075 -0.9 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
AO353_06495 -0.9 -3.3 gamma-glutamyl phosphate reductase compare
AO353_12950 -0.8 -4.7 polymerase compare
AO353_09490 -0.8 -2.4 hypothetical protein compare
AO353_03710 -0.8 -1.6 formyltetrahydrofolate deformylase compare
AO353_21430 -0.8 -2.5 hypothetical protein compare
AO353_27300 -0.8 -3.5 phage tail protein compare
AO353_27860 -0.8 -3.9 hypothetical protein compare
AO353_04520 -0.8 -3.4 elongation factor 4 compare
AO353_23790 -0.8 -2.0 metal-binding protein compare
AO353_01780 -0.8 -5.2 heat-shock protein Hsp90 compare
AO353_03295 -0.8 -6.0 ribonuclease BN compare
AO353_02225 -0.8 -2.2 LuxR family transcriptional regulator compare
AO353_26830 -0.8 -2.8 histidine kinase compare
AO353_15490 -0.8 -1.2 hypothetical protein compare
AO353_14420 -0.8 -2.4 molecular chaperone DnaK compare
AO353_10445 -0.8 -1.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_04355 -0.8 -1.4 homoserine dehydrogenase compare
AO353_04500 -0.8 -1.8 DNA repair protein RecO compare
AO353_06275 -0.8 -1.7 DNA polymerase III subunit epsilon compare
AO353_12565 -0.8 -2.1 type II secretion system protein GspH compare
AO353_17445 -0.8 -1.9 hypothetical protein compare
AO353_05625 -0.8 -0.7 transcription elongation factor GreA compare
AO353_22395 -0.8 -2.5 pyrroloquinoline quinone biosynthesis protein PqqB compare
AO353_07460 -0.8 -1.7 DNA-binding protein compare
AO353_23285 -0.8 -1.9 hypothetical protein compare
AO353_02690 -0.8 -4.0 dehydrogenase compare
AO353_23710 -0.7 -2.9 protein BatD compare
AO353_26595 -0.7 -2.7 copper resistance protein CopD compare
AO353_15270 -0.7 -2.8 phospholipid-binding protein compare
AO353_11525 -0.7 -4.3 aminotransferase compare
AO353_14500 -0.7 -3.4 acetolactate synthase 3 regulatory subunit compare
AO353_02465 -0.7 -1.3 hypothetical protein compare
AO353_08785 -0.7 -3.5 hypothetical protein compare
AO353_03805 -0.7 -2.0 C4-dicarboxylate ABC transporter compare
AO353_02970 -0.7 -2.2 carbon storage regulator compare
AO353_15130 -0.7 -3.4 hypothetical protein compare
AO353_24415 -0.7 -1.3 glutamine ABC transporter ATP-binding protein compare
AO353_07730 -0.7 -2.8 hypothetical protein compare
AO353_18715 -0.7 -1.2 histidine kinase compare
AO353_13160 -0.7 -1.3 membrane protease HflC compare
AO353_18700 -0.7 -1.6 flagellar biogenesis protein compare
AO353_21445 -0.7 -2.0 cation:proton antiporter compare
AO353_27435 -0.7 -1.2 hypothetical protein compare
AO353_18780 -0.7 -3.4 cobyrinic acid a,c-diamide synthase compare
AO353_00185 -0.7 -1.2 phage tail protein compare
AO353_15555 -0.7 -2.4 fumarylacetoacetase compare
AO353_23735 -0.7 -3.9 AAA family ATPase compare
AO353_12420 -0.7 -1.9 predicted FeS cluster maintenance protein (from data) compare
AO353_05340 -0.7 -3.1 histidine kinase compare
AO353_14370 -0.7 -3.3 glucose-6-phosphate isomerase compare
AO353_19360 -0.7 -1.4 peroxiredoxin compare
AO353_07235 -0.7 -3.8 phosphoglycolate phosphatase compare
AO353_02570 -0.7 -1.7 hypothetical protein compare
AO353_22615 -0.7 -2.3 hypothetical protein compare
AO353_11935 -0.7 -4.6 hypothetical protein compare
AO353_27400 -0.7 -1.6 hypothetical protein compare
AO353_00515 -0.7 -1.7 hypothetical protein compare
AO353_23410 -0.7 -1.2 hypothetical protein compare
AO353_20660 -0.7 -2.2 pseudouridine synthase compare
AO353_18450 -0.7 -2.7 hypothetical protein compare
AO353_12045 -0.7 -2.8 iron transporter compare


Specific Phenotypes

For 9 genes in this experiment

For stress 1-ethyl-3-methylimidazolium chloride in Pseudomonas fluorescens FW300-N2E3

For stress 1-ethyl-3-methylimidazolium chloride across organisms