Experiment set4IT078 for Pseudomonas fluorescens FW300-N1B4

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Carnitine Hydrochloride carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf1N1B4_2428 -3.5 -8.2 FIG143042: Thioesterase-like protein conserved
Pf1N1B4_2430 -3.4 -5.5 FIG004891: hypothetical protein in carnitine cluster conserved
Pf1N1B4_2425 -3.1 -5.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain conserved
Pf1N1B4_2440 -3.0 -5.9 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF conserved
Pf1N1B4_2438 -2.8 -6.7 FIG00953113: hypothetical protein conserved
Pf1N1B4_2420 -2.8 -8.0 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf1N1B4_2455 -2.6 -5.8 Sarcosine oxidase beta subunit (EC 1.5.3.1) conserved
Pf1N1B4_2422 -2.6 -5.1 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) conserved
Pf1N1B4_2454 -2.5 -6.1 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) conserved
Pf1N1B4_2457 -2.5 -8.0 Sarcosine oxidase alpha subunit (EC 1.5.3.1) conserved
Pf1N1B4_2439 -2.5 -7.5 DgcA Dimethylglycine demethylase subunit A conserved
Pf1N1B4_3430 -2.2 -13.3 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf1N1B4_2448 -2.1 -6.3 GbcB Glycine betaine demethylase subunit B conserved
Pf1N1B4_2447 -2.0 -5.3 GbcA Glycine betaine demethylase subunit A conserved
Pf1N1B4_3725 -2.0 -5.9 Sensory box histidine kinase/response regulator compare
Pf1N1B4_4052 -1.7 -6.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2503 -1.6 -9.3 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_1673 -1.4 -6.0 Formate dehydrogenase chain D (EC 1.2.1.2) compare
Pf1N1B4_1652 -1.4 -7.0 transcriptional regulator, LysR family compare
Pf1N1B4_2423 -1.1 -6.0 L-serine dehydratase (EC 4.3.1.17) conserved
Pf1N1B4_1820 -1.0 -7.2 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) conserved
Pf1N1B4_2730 +1.1 6.8 FIG00958173: hypothetical protein compare
Pf1N1B4_2418 +1.6 8.2 HTH-type transcriptional regulator BetI conserved


Specific phenotypes for carbon source Carnitine Hydrochloride across organisms