Experiment set4IT078 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Carnitine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5666 -4.1 -2.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2880 -4.0 -8.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_6 -3.9 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_15 -3.7 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2428 -3.5 -8.2 FIG143042: Thioesterase-like protein conserved
Pf1N1B4_2284 -3.4 -2.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_1408 -3.4 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2430 -3.4 -5.5 FIG004891: hypothetical protein in carnitine cluster conserved
Pf1N1B4_1533 -3.4 -6.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2441 -3.3 -4.9 Electron transfer flavoprotein, alpha subunit compare
Pf1N1B4_1830 -3.3 -9.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_4494 -3.3 -4.3 hypothetical protein compare
Pf1N1B4_2303 -3.3 -14.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1534 -3.3 -17.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_4042 -3.3 -4.3 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_2547 -3.2 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1307 -3.2 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1831 -3.2 -10.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1624 -3.1 -8.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2384 -3.1 -11.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_5665 -3.1 -5.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_350 -3.1 -7.2 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2425 -3.1 -5.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain conserved
Pf1N1B4_2860 -3.0 -5.7 FIG00954153: hypothetical protein compare
Pf1N1B4_2112 -3.0 -14.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1626 -3.0 -6.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2545 -3.0 -11.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2458 -3.0 -2.8 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_2338 -3.0 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2440 -3.0 -5.9 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF conserved
Pf1N1B4_1565 -2.9 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2421 -2.9 -3.4 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_2858 -2.9 -9.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2548 -2.9 -6.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1627 -2.9 -3.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1067 -2.9 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2282 -2.9 -8.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2438 -2.8 -6.7 FIG00953113: hypothetical protein conserved
Pf1N1B4_2420 -2.8 -8.0 L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) conserved
Pf1N1B4_1315 -2.8 -8.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2010 -2.7 -6.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2549 -2.7 -8.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2526 -2.7 -14.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4030 -2.7 -3.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_2879 -2.7 -5.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_12 -2.6 -6.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2455 -2.6 -5.8 Sarcosine oxidase beta subunit (EC 1.5.3.1) conserved
Pf1N1B4_27 -2.6 -5.1 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_742 -2.6 -7.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2422 -2.6 -5.1 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) conserved
Pf1N1B4_2009 -2.6 -4.2 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_4038 -2.5 -2.8 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_4065 -2.5 -7.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_58 -2.5 -6.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2454 -2.5 -6.1 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) conserved
Pf1N1B4_2457 -2.5 -8.0 Sarcosine oxidase alpha subunit (EC 1.5.3.1) conserved
Pf1N1B4_2456 -2.5 -1.7 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_1617 -2.5 -8.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2439 -2.5 -7.5 DgcA Dimethylglycine demethylase subunit A conserved
Pf1N1B4_2878 -2.5 -9.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2859 -2.4 -13.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3506 -2.4 -7.5 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_3812 -2.4 -9.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1625 -2.4 -4.4 FIG00956267: hypothetical protein compare
Pf1N1B4_3917 -2.4 -5.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2431 -2.4 -3.8 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) compare
Pf1N1B4_2280 -2.3 -8.6 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1462 -2.3 -13.9 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3468 -2.3 -2.5 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_1653 -2.3 -6.7 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_762 -2.3 -6.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4299 -2.3 -3.7 sensor histidine kinase compare
Pf1N1B4_2208 -2.3 -7.9 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_1906 -2.3 -3.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_2493 -2.2 -2.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3430 -2.2 -13.3 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf1N1B4_3328 -2.2 -2.8 Rhodanese-like domain protein compare
Pf1N1B4_2337 -2.2 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2487 -2.2 -7.8 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_4493 -2.2 -4.6 FIG00443700: hypothetical protein compare
Pf1N1B4_847 -2.2 -8.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_875 -2.2 -3.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2429 -2.2 -4.7 Carnitine 3-dehydrogenase (EC 1.1.1.108) (from data) compare
Pf1N1B4_2432 -2.1 -2.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_5817 -2.1 -1.9 Decarboxylase family protein compare
Pf1N1B4_4491 -2.1 -4.5 ABC transporter permease protein compare
Pf1N1B4_2478 -2.1 -8.2 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_2448 -2.1 -6.3 GbcB Glycine betaine demethylase subunit B conserved
Pf1N1B4_257 -2.0 -7.0 sensor histidine kinase/response regulator compare
Pf1N1B4_2447 -2.0 -5.3 GbcA Glycine betaine demethylase subunit A conserved
Pf1N1B4_237 -2.0 -3.4 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_1469 -2.0 -15.3 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_578 -2.0 -3.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3725 -2.0 -5.9 Sensory box histidine kinase/response regulator compare
Pf1N1B4_5834 -2.0 -2.9 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_2011 -2.0 -7.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_4039 -2.0 -6.5 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2488 -2.0 -7.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1113 -1.9 -5.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_5833 -1.9 -2.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_4028 -1.9 -4.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1 -1.9 -2.7 Colicin V production protein compare
Pf1N1B4_1317 -1.9 -3.6 Sensor histidine kinase/response regulator compare
Pf1N1B4_717 -1.8 -7.2 Iron-regulated protein A precursor compare
Pf1N1B4_740 -1.8 -3.4 Leucyl-tRNA synthetase compare
Pf1N1B4_2437 -1.8 -4.4 Microsomal dipeptidase (EC 3.4.13.19) compare
Pf1N1B4_4489 -1.8 -3.2 Transcriptional regulator, LuxR family compare
Pf1N1B4_1668 -1.7 -5.3 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_3081 -1.7 -14.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4052 -1.7 -6.8 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) conserved
Pf1N1B4_4040 -1.7 -2.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1115 -1.7 -9.2 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4506 -1.7 -3.2 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_1463 -1.7 -7.2 hypothetical protein compare
Pf1N1B4_1458 -1.7 -7.7 Probable transcription regulator Mig-14 compare
Pf1N1B4_339 -1.7 -2.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1590 -1.7 -5.3 Histidine utilization repressor compare
Pf1N1B4_5906 -1.7 -3.9 Esterase/lipase compare
Pf1N1B4_3833 -1.6 -7.0 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1054 -1.6 -3.5 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_2706 -1.6 -3.0 FIG00954871: hypothetical protein compare
Pf1N1B4_1566 -1.6 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_2874 -1.6 -2.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2503 -1.6 -9.3 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_4055 -1.6 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_3703 -1.6 -3.0 NLP/P60 family protein compare
Pf1N1B4_3038 -1.6 -5.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2377 -1.6 -5.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_419 -1.6 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_2893 -1.5 -6.6 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_715 -1.5 -5.0 Iron-regulated protein A precursor compare
Pf1N1B4_652 -1.5 -8.2 Sensory box histidine kinase compare
Pf1N1B4_3149 -1.5 -2.3 hypothetical protein compare
Pf1N1B4_718 -1.5 -5.6 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_414 -1.5 -2.9 transcriptional regulator compare
Pf1N1B4_5624 -1.5 -3.5 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_2283 -1.5 -2.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_3726 -1.5 -4.9 Sensory box histidine kinase/response regulator compare
Pf1N1B4_952 -1.5 -2.9 Cell division protein MraZ compare
Pf1N1B4_236 -1.5 -2.9 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_235 -1.5 -5.4 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_2491 -1.5 -3.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_418 -1.4 -6.1 Molybdenum cofactor biosynthesis protein MoaA compare
Pf1N1B4_1673 -1.4 -6.0 Formate dehydrogenase chain D (EC 1.2.1.2) compare
Pf1N1B4_4833 -1.4 -3.3 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2004 -1.4 -2.2 putative membrane protein compare
Pf1N1B4_615 -1.4 -2.5 Arginine deiminase (EC 3.5.3.6) compare
Pf1N1B4_1652 -1.4 -7.0 transcriptional regulator, LysR family compare
Pf1N1B4_364 -1.4 -3.5 Rhodanese domain protein UPF0176 compare
Pf1N1B4_3445 -1.4 -3.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_3074 -1.3 -2.0 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_4824 -1.3 -2.3 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_4212 -1.3 -2.5 Gfa-like protein compare
Pf1N1B4_2850 -1.3 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_648 -1.3 -11.8 Outer membrane porin, OprD family compare
Pf1N1B4_2442 -1.3 -2.1 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_5838 -1.3 -2.6 FIG00956589: hypothetical protein compare
Pf1N1B4_1837 -1.3 -1.8 Osmotically inducible protein C compare
Pf1N1B4_3143 -1.3 -2.5 RecA protein compare
Pf1N1B4_2225 -1.3 -8.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_4318 -1.3 -2.8 hypothetical protein compare
Pf1N1B4_2489 -1.3 -4.0 Biotin synthesis protein BioH compare
Pf1N1B4_4320 -1.3 -2.9 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_3647 -1.2 -7.8 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_1474 -1.2 -3.4 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_617 -1.2 -1.7 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_2527 -1.2 -7.0 ApaG protein compare
Pf1N1B4_327 -1.2 -1.6 hypothetical protein compare
Pf1N1B4_4035 -1.2 -1.4 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_1234 -1.2 -3.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_978 -1.2 -5.9 Predicted ATPase related to phosphate starvation-inducible protein PhoH compare
Pf1N1B4_1057 -1.2 -1.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1236 -1.2 -4.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_2060 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_5619 -1.2 -3.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_647 -1.1 -5.6 hypothetical protein compare
Pf1N1B4_828 -1.1 -4.0 Multicopper oxidase compare
Pf1N1B4_3595 -1.1 -2.1 Flagellin protein FlaG compare
Pf1N1B4_1993 -1.1 -1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_5591 -1.1 -2.1 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_3168 -1.1 -2.6 AmpG permease compare
Pf1N1B4_3720 -1.1 -5.5 Long-chain fatty acid transport protein compare
Pf1N1B4_5383 -1.1 -7.5 hypothetical protein compare
Pf1N1B4_2490 -1.1 -4.2 Biotin synthesis protein BioC compare
Pf1N1B4_4029 -1.1 -1.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1540 -1.1 -2.9 Type IV pilus biogenesis protein PilP compare
Pf1N1B4_74 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_4870 -1.1 -1.9 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_4041 -1.1 -2.2 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2423 -1.1 -6.0 L-serine dehydratase (EC 4.3.1.17) conserved
Pf1N1B4_3906 -1.1 -2.7 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4273 -1.1 -3.1 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf1N1B4_5786 -1.1 -2.9 putative membrane protein compare
Pf1N1B4_960 -1.0 -6.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3279 -1.0 -1.8 putative membrane protein compare
Pf1N1B4_2147 -1.0 -3.4 Putrescine utilization regulator compare
Pf1N1B4_6036 -1.0 -2.2 FIG00953132: hypothetical protein compare
Pf1N1B4_219 -1.0 -2.5 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_3907 -1.0 -2.1 FIG00953287: hypothetical protein compare
Pf1N1B4_5860 -1.0 -2.0 Two-component response regulator compare


Specific Phenotypes

For 23 genes in this experiment

For carbon source Carnitine Hydrochloride in Pseudomonas fluorescens FW300-N1B4

For carbon source Carnitine Hydrochloride across organisms