Experiment set4IT078 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_0.23_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_00380 -5.3 -1.9 hypothetical protein compare
CSW01_17750 -4.7 -1.0 cytochrome B compare
CSW01_10255 -4.4 -1.8 cytochrome c-type biogenesis protein CcmH compare
CSW01_16130 -4.4 -0.9 acetyltransferase compare
CSW01_13450 -4.3 -2.8 EF-P beta-lysylation protein EpmB compare
CSW01_18150 -4.3 -0.9 transcription initiation factor TFIIIB compare
CSW01_13305 -4.1 -2.1 shikimate kinase compare
CSW01_18350 -4.0 -1.7 cell division protein DedD compare
CSW01_11560 -3.8 -2.6 riboflavin biosynthesis protein RibD compare
CSW01_12365 -3.8 -2.6 inorganic phosphate transporter compare
CSW01_17000 -3.7 -1.8 DUF3332 domain-containing protein compare
CSW01_11565 -3.7 -2.1 transcriptional regulator NrdR compare
CSW01_08705 -3.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_01485 -3.5 -6.2 transcriptional regulator compare
CSW01_05275 -3.4 -1.0 hypothetical protein compare
CSW01_07580 -3.4 -1.6 hypothetical protein compare
CSW01_03410 -3.4 -2.5 polyribonucleotide nucleotidyltransferase compare
CSW01_06380 -3.2 -2.2 GTP cyclohydrolase II compare
CSW01_09525 -3.1 -1.6 DNA translocase FtsK compare
CSW01_16325 -3.0 -1.1 hypothetical protein compare
CSW01_04820 -3.0 -10.0 serine hydroxymethyltransferase compare
CSW01_18635 -3.0 -5.3 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_15965 -2.8 -2.2 DUF645 domain-containing protein compare
CSW01_17830 -2.8 -2.2 hypothetical protein compare
CSW01_13285 -2.7 -4.9 ribulose-phosphate 3-epimerase compare
CSW01_00675 -2.7 -1.5 hypothetical protein compare
CSW01_10270 -2.7 -3.8 cytochrome c-type biogenesis protein CcmE compare
CSW01_00560 -2.7 -5.9 DNA polymerase I compare
CSW01_05575 -2.6 -3.1 phosphate acetyltransferase compare
CSW01_10285 -2.6 -2.7 heme exporter protein CcmB compare
CSW01_12005 -2.5 -6.5 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_05800 -2.5 -2.8 ATP-dependent Clp protease adaptor ClpS compare
CSW01_13445 -2.4 -1.7 elongation factor P compare
CSW01_03980 -2.3 -8.0 IMP dehydrogenase compare
CSW01_11730 -2.3 -2.3 2-dehydropantoate 2-reductase compare
CSW01_05580 -2.1 -6.0 acetate kinase compare
CSW01_10875 -2.1 -5.1 redox-regulated ATPase YchF compare
CSW01_09485 -2.1 -2.1 DUF1425 domain-containing protein compare
CSW01_00615 -2.1 -1.7 hypothetical protein compare
CSW01_09220 -2.1 -1.2 cyd operon protein YbgE compare
CSW01_03205 -2.1 -6.5 iron ABC transporter substrate-binding protein compare
CSW01_12885 -2.0 -8.1 fructose 1,6-bisphosphatase compare
CSW01_11555 -2.0 -3.5 riboflavin synthase compare
CSW01_17745 -2.0 -2.6 diacylglycerol kinase compare
CSW01_13420 -2.0 -2.1 elongation factor P--(R)-beta-lysine ligase compare
CSW01_06790 -2.0 -3.7 maleylacetoacetate isomerase compare
CSW01_10565 -2.0 -2.0 hypothetical protein compare
CSW01_18725 -1.9 -1.7 TetR/AcrR family transcriptional regulator compare
CSW01_08355 -1.9 -1.9 heat-shock protein HslJ compare
CSW01_11325 -1.9 -1.5 DUF3149 domain-containing protein compare
CSW01_01535 -1.9 -3.0 hypothetical protein compare
CSW01_03050 -1.9 -4.7 cytochrome b compare
CSW01_07810 -1.9 -1.9 glycerophosphoryl diester phosphodiesterase compare
CSW01_03210 -1.8 -8.3 iron ABC transporter permease compare
CSW01_10260 -1.8 -1.8 thiol:disulfide interchange protein DsbE compare
CSW01_16655 -1.8 -2.1 hypothetical protein compare
CSW01_13810 -1.8 -6.2 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_17585 -1.8 -1.0 periplasmic nitrate reductase electron transfer subunit compare
CSW01_09720 -1.8 -1.6 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_09815 -1.8 -2.6 TetR/AcrR family transcriptional regulator compare
CSW01_00415 -1.8 -1.7 hypothetical protein compare
CSW01_03215 -1.7 -7.7 ABC transporter ATP-binding protein compare
CSW01_01490 -1.7 -2.3 Fis family transcriptional regulator compare
CSW01_13670 -1.7 -1.9 DNA-directed RNA polymerase subunit omega compare
CSW01_07460 -1.7 -0.9 ribosome modulation factor compare
CSW01_05240 -1.7 -1.7 CBS domain-containing protein compare
CSW01_13635 -1.7 -6.9 thiol:disulfide interchange protein DsbD compare
CSW01_15680 -1.6 -1.3 DUF3265 domain-containing protein compare
CSW01_09420 -1.6 -1.7 DUF2062 domain-containing protein compare
CSW01_10145 -1.6 -3.3 ribonuclease E compare
CSW01_00450 -1.6 -1.5 SCP2 domain-containing protein compare
CSW01_09920 -1.5 -1.3 chromosome partitioning protein ParA compare
CSW01_01875 -1.5 -2.1 hypothetical protein compare
CSW01_17495 -1.5 -3.8 glycerol-3-phosphate dehydrogenase compare
CSW01_05730 -1.5 -8.2 inosine/guanosine kinase compare
CSW01_18525 -1.5 -0.9 integrase compare
CSW01_04900 -1.5 -3.6 magnesium and cobalt efflux protein CorC compare
CSW01_09240 -1.5 -3.0 Holliday junction branch migration DNA helicase RuvB compare
CSW01_17360 -1.5 -1.7 GNAT family acetyltransferase compare
CSW01_03325 -1.4 -2.4 porin compare
CSW01_15150 -1.4 -1.6 hypothetical protein compare
CSW01_10170 -1.4 -1.2 MarC family protein compare
CSW01_00195 -1.4 -2.6 hypothetical protein compare
CSW01_11920 -1.4 -4.4 NupC/NupG family nucleoside CNT transporter compare
CSW01_18270 -1.4 -0.9 L-ectoine synthase compare
CSW01_12940 -1.4 -2.3 DUF3299 domain-containing protein compare
CSW01_07215 -1.4 -2.0 cytochrome-c oxidase, cbb3-type subunit III compare
CSW01_03695 -1.4 -4.7 ribosomal large subunit pseudouridine synthase D compare
CSW01_07085 -1.4 -4.5 carboxypeptidase M32 compare
CSW01_04080 -1.3 -2.2 hypothetical protein compare
CSW01_03950 -1.3 -1.9 hypothetical protein compare
CSW01_18730 -1.3 -0.9 DUF406 domain-containing protein compare
CSW01_17325 -1.3 -3.3 transaldolase compare
CSW01_16035 -1.3 -2.2 DUF645 domain-containing protein compare
CSW01_00500 -1.3 -7.3 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_01125 -1.3 -5.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_03335 -1.3 -2.0 ribosome assembly RNA-binding protein YhbY compare
CSW01_10600 -1.3 -1.5 flagellar biosynthetic protein FliO compare
CSW01_05900 -1.3 -1.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
CSW01_04850 -1.3 -1.7 septal ring lytic transglycosylase RlpA compare
CSW01_00095 -1.2 -1.6 hypothetical protein compare
CSW01_10080 -1.2 -2.1 4-amino-4-deoxychorismate lyase compare
CSW01_10630 -1.2 -1.8 flagella biosynthesis chaperone FliJ compare
CSW01_10655 -1.2 -1.4 flagellar hook-basal body complex protein FliE compare
CSW01_08345 -1.2 -1.6 hypothetical protein compare
CSW01_05165 -1.2 -0.9 electron transport complex subunit RsxC compare
CSW01_11745 -1.2 -1.9 cysteine desulfurase sulfur acceptor subunit CsdE compare
CSW01_16835 -1.1 -3.1 catabolite repressor/activator compare
CSW01_15205 -1.1 -3.7 HTH-type transcriptional regulator UlaR compare
CSW01_02450 -1.1 -4.9 pyrroline-5-carboxylate reductase compare
CSW01_07730 -1.1 -2.1 CPXCG motif-containing cysteine-rich protein compare
CSW01_19610 -1.1 -2.1 biliverdin-producing heme oxygenase compare
CSW01_15175 -1.1 -3.0 xylulose 5-phosphate 3-epimerase compare
CSW01_13805 -1.1 -2.6 Hsp33 family molecular chaperone HslO compare
CSW01_14455 -1.1 -1.0 hypothetical protein compare
CSW01_19080 -1.1 -3.0 alkene reductase compare
CSW01_03880 -1.1 -0.8 HTH-type transcriptional regulator IscR compare
CSW01_11915 -1.1 -1.8 hypothetical protein compare
CSW01_07060 -1.1 -1.3 TetR/AcrR family transcriptional regulator compare
CSW01_08240 -1.1 -2.9 ATP-binding protein compare
CSW01_09375 -1.1 -1.7 YfbU family protein compare
CSW01_05490 -1.1 -3.4 L-threonylcarbamoyladenylate synthase compare
CSW01_15780 -1.1 -1.9 hypothetical protein compare
CSW01_11670 -1.1 -1.2 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_12320 -1.1 -2.4 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_03785 -1.1 -2.0 phosphate ABC transporter permease compare
CSW01_02980 -1.1 -3.8 HlyC/CorC family transporter compare
CSW01_02490 -1.1 -3.8 glutathione synthetase compare
CSW01_10265 -1.0 -2.7 c-type cytochrome biogenesis protein CcmF compare
CSW01_10455 -1.0 -2.5 citrate synthase compare
CSW01_19510 -1.0 -1.3 anti-sigma factor antagonist compare
CSW01_14100 -1.0 -1.4 hypothetical protein compare
CSW01_07145 -1.0 -1.2 spermidine/putrescine ABC transporter substrate-binding protein compare
CSW01_17525 -1.0 -0.7 hypothetical protein compare
CSW01_07235 -1.0 -1.8 hypothetical protein compare
CSW01_08905 -1.0 -2.3 MurR/RpiR family transcriptional regulator compare
CSW01_15425 -1.0 -0.7 DUF3265 domain-containing protein compare
CSW01_07160 -1.0 -2.7 spermidine/putrescine ABC transporter ATP-binding protein compare
CSW01_00015 -1.0 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_03915 -1.0 -1.0 Fe-S assembly protein IscX compare
CSW01_07915 -1.0 -2.1 glycine--lipid A transferase AlmG compare
CSW01_11115 -1.0 -1.7 hypothetical protein compare
CSW01_00065 -1.0 -4.3 DNA replication and repair protein RecF compare
CSW01_06050 -1.0 -1.9 DUF2786 domain-containing protein compare
CSW01_02320 -1.0 -2.3 Co2+/Mg2+ efflux protein ApaG compare
CSW01_15255 -1.0 -1.2 copper-binding protein compare
CSW01_03065 -1.0 -0.9 ClpXP protease specificity-enhancing factor compare
CSW01_15165 -1.0 -2.1 DNA-binding response regulator compare
CSW01_09275 -1.0 -1.6 hypothetical protein compare
CSW01_02890 -1.0 -3.2 aspartate kinase compare
CSW01_11215 -1.0 -2.8 flagellar hook assembly protein FlgD compare
CSW01_14810 -1.0 -1.4 tryptophanase leader peptide compare
CSW01_09740 -1.0 -1.6 hypothetical protein compare
CSW01_05425 -1.0 -3.5 hypothetical protein compare
CSW01_06810 -1.0 -0.6 hypothetical protein compare
CSW01_07135 -1.0 -2.2 chromosome partitioning protein ParA compare
CSW01_00170 -1.0 -2.7 thiol:disulfide interchange protein DsbA compare
CSW01_06015 -1.0 -3.2 NAD-dependent malic enzyme compare
CSW01_03030 -0.9 -4.5 cell division protein ZapE compare
CSW01_11535 -0.9 -2.3 thiamine-phosphate kinase compare
CSW01_14385 -0.9 -3.1 phosphate ABC transporter ATP-binding protein compare
CSW01_15470 -0.9 -1.4 NAD(P)-dependent oxidoreductase compare
CSW01_05310 -0.9 -1.8 DUF3379 domain-containing protein compare
CSW01_06955 -0.9 -2.2 hypothetical protein compare
CSW01_12735 -0.9 -2.1 RidA family protein compare
CSW01_00470 -0.9 -2.0 twin-arginine translocase subunit TatC compare
CSW01_00570 -0.9 -1.7 cytochrome c4 compare
CSW01_02875 -0.9 -2.2 DNA recombination/repair protein RecA compare
CSW01_10020 -0.9 -4.7 ROK family protein compare
CSW01_03145 -0.9 -1.5 polynucleotide adenylyltransferase PcnB compare
CSW01_18830 -0.9 -2.6 DeoR/GlpR family transcriptional regulator compare
CSW01_02970 -0.9 -2.8 glutamate--cysteine ligase compare
CSW01_02530 -0.9 -3.1 D-erythrose-4-phosphate dehydrogenase compare
CSW01_17780 -0.9 -0.8 hypothetical protein compare
CSW01_16495 -0.9 -2.4 hypothetical protein compare
CSW01_17005 -0.9 -2.4 sensor domain-containing diguanylate cyclase compare
CSW01_05265 -0.9 -0.7 methionine--tRNA ligase compare
CSW01_12535 -0.9 -1.5 cell division protein ZapA compare
CSW01_11190 -0.9 -2.7 flagellar P-ring protein compare
CSW01_08625 -0.9 -2.4 chromosome partition protein MukE compare
CSW01_10035 -0.9 -0.7 YnhF family membrane protein compare
CSW01_03080 -0.9 -1.4 YraN family protein compare
CSW01_11220 -0.9 -1.6 flagellar basal body rod protein FlgC compare
CSW01_15005 -0.9 -1.1 HNH endonuclease compare
CSW01_08565 -0.9 -0.5 hypothetical protein compare
CSW01_14190 -0.9 -1.6 hypothetical protein compare
CSW01_00460 -0.9 -1.5 twin-arginine translocase subunit TatA compare
CSW01_01820 -0.9 -2.9 N-acetylmuramoyl-L-alanine amidase compare
CSW01_02230 -0.9 -2.5 ribonuclease E inhibitor RraB compare
CSW01_13155 -0.9 -4.6 ribonuclease R compare
CSW01_00650 -0.8 -3.6 tyrosine recombinase XerC compare
CSW01_01330 -0.8 -1.4 oxidoreductase compare
CSW01_14080 -0.8 -0.5 DUF3283 domain-containing protein compare
CSW01_05350 -0.8 -1.8 hypothetical protein compare
CSW01_12680 -0.8 -2.4 cytosol aminopeptidase compare
CSW01_07520 -0.8 -1.7 RNA chaperone ProQ compare
CSW01_05415 -0.8 -2.2 lipo-like protein compare
CSW01_13565 -0.8 -1.6 cell division protein ZapB compare
CSW01_11410 -0.8 -1.1 nitrogen regulatory protein P-II compare
CSW01_09990 -0.8 -0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms