Experiment set4IT078 for Methanococcus maripaludis JJ

Compare to:

Iron limitation (0.2x), formate media

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.4 -23.4 hypothetical protein compare
MMJJ_RS04200 -5.9 -5.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06625 -5.4 -2.9 pyruvate synthase subunit PorB compare
MMJJ_RS04485 -5.3 -11.4 riboflavin synthase compare
MMJJ_RS08250 -5.1 -6.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS08065 -5.1 -1.8 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS06240 -4.9 -4.0 dihydropteroate synthase-like protein compare
MMJJ_RS01935 -4.8 -5.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06490 -4.7 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS00570 -4.6 -2.7 ribonuclease P compare
MMJJ_RS00275 -4.6 -3.6 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03065 -4.6 -15.2 CBS domain-containing protein compare
MMJJ_RS06510 -4.5 -4.1 LL-diaminopimelate aminotransferase compare
MMJJ_RS03895 -4.5 -4.2 hydrogenase expression/formation protein HypE compare
MMJJ_RS01750 -4.3 -3.7 ferrous iron transport protein A compare
MMJJ_RS03820 -4.3 -5.0 hydrogenase formation protein HypD compare
MMJJ_RS00475 -4.3 -3.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06750 -4.2 -3.2 homoaconitase large subunit compare
MMJJ_RS02045 -4.2 -4.1 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05935 -4.2 -3.6 Era-like GTP-binding protein compare
MMJJ_RS08320 -4.1 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06860 -4.1 -5.5 hypothetical protein compare
MMJJ_RS05450 -4.1 -17.1 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS06875 -4.1 -3.6 hypothetical protein compare
MMJJ_RS08330 -4.1 -4.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00210 -4.0 -3.2 DUF530 family protein compare
MMJJ_RS02920 -4.0 -3.4 30S ribosomal protein S27ae compare
MMJJ_RS05575 -4.0 -5.0 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07360 -3.9 -2.4 TIGR00269 family protein compare
MMJJ_RS02090 -3.9 -7.4 tyramine--L-glutamate ligase compare
MMJJ_RS07275 -3.9 -2.7 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05610 -3.8 -5.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS05650 -3.8 -4.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07970 -3.8 -3.1 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS03110 -3.8 -5.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS04155 -3.7 -9.2 hypothetical protein compare
MMJJ_RS09190 -3.7 -3.0 tryptophan synthase subunit beta compare
MMJJ_RS08840 -3.7 -5.6 calcium/sodium antiporter compare
MMJJ_RS06575 -3.7 -4.2 prephenate dehydrogenase compare
MMJJ_RS08795 -3.7 -3.9 phosphoglucosamine mutase compare
MMJJ_RS05950 -3.7 -4.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS08080 -3.6 -10.7 TIGR00300 family protein compare
MMJJ_RS06175 -3.6 -3.3 DUF1743 domain-containing protein compare
MMJJ_RS05590 -3.6 -2.5 homoserine dehydrogenase compare
MMJJ_RS01415 -3.6 -3.7 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS01755 -3.5 -3.2 ferrous iron transport protein B compare
MMJJ_RS06840 -3.5 -5.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03615 -3.5 -4.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS05070 -3.4 -3.4 DNA primase catalytic subunit PriS compare
MMJJ_RS03670 -3.4 -7.2 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS07665 -3.4 -22.5 formate dehydrogenase subunit alpha compare
MMJJ_RS07350 -3.4 -4.2 4Fe-4S binding protein compare
MMJJ_RS08020 -3.4 -11.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03840 -3.4 -5.5 DHH family phosphoesterase compare
MMJJ_RS08625 -3.4 -8.8 magnesium/cobalt transporter CorA compare
MMJJ_RS02275 -3.4 -6.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05535 -3.3 -14.3 hypothetical protein compare
MMJJ_RS03190 -3.3 -3.6 phosphopyruvate hydratase compare
MMJJ_RS06155 -3.3 -6.8 phosphatidylglycerophosphatase A compare
MMJJ_RS03270 -3.3 -3.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS05995 -3.3 -3.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS06695 -3.3 -3.7 amidohydrolase compare
MMJJ_RS05155 -3.3 -7.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS03005 -3.2 -5.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04790 -3.2 -5.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06910 -3.2 -4.1 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03295 -3.1 -14.4 PHP domain-containing protein compare
MMJJ_RS07655 -3.1 -15.4 hypothetical protein compare
MMJJ_RS06725 -3.1 -12.1 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS00355 -3.1 -4.2 ribonuclease P protein component 4 compare
MMJJ_RS07380 -3.1 -10.2 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS03875 -3.1 -5.0 CBS domain-containing protein compare
MMJJ_RS03760 -3.1 -4.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03620 -3.1 -6.4 DUF2097 domain-containing protein compare
MMJJ_RS08660 -3.0 -4.5 acetylornithine transaminase compare
MMJJ_RS06255 -3.0 -8.5 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03150 -3.0 -6.4 2-phospho-L-lactate transferase compare
MMJJ_RS00270 -3.0 -4.6 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS08055 -3.0 -7.8 methanogenesis marker 14 protein compare
MMJJ_RS01565 -3.0 -6.2 TIGR00267 family protein compare
MMJJ_RS05620 -3.0 -6.2 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS07670 -2.9 -17.3 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06785 -2.9 -8.9 RNA ligase partner protein compare
MMJJ_RS01870 -2.9 -2.6 methanogenesis marker 15 protein compare
MMJJ_RS02200 -2.9 -10.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS00520 -2.9 -10.5 PDGLE domain-containing protein compare
MMJJ_RS05490 -2.9 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06915 -2.9 -14.1 helix-turn-helix domain-containing protein compare
MMJJ_RS00560 -2.8 -5.1 homoisocitrate dehydrogenase compare
MMJJ_RS06390 -2.8 -3.0 NADPH-dependent F420 reductase compare
MMJJ_RS04800 -2.8 -5.7 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06930 -2.8 -3.4 type II methionyl aminopeptidase compare
MMJJ_RS07995 -2.8 -7.5 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS07245 -2.8 -6.7 amidohydrolase family protein compare
MMJJ_RS07950 -2.8 -4.6 4Fe-4S binding protein compare
MMJJ_RS04655 -2.7 -7.3 FAD-dependent oxidoreductase compare
MMJJ_RS08000 -2.7 -10.4 HesA/MoeB/ThiF family protein compare
MMJJ_RS01600 -2.7 -3.7 radical SAM protein compare
MMJJ_RS06040 -2.7 -4.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04730 -2.7 -3.4 tyrosine decarboxylase MfnA compare
MMJJ_RS00215 -2.7 -2.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04995 -2.7 -6.4 Tfx family DNA-binding protein compare
MMJJ_RS03580 -2.7 -4.1 TIGR00303 family protein compare
MMJJ_RS05065 -2.7 -3.4 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08535 -2.6 -4.0 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05260 -2.6 -7.1 ATP-grasp domain-containing protein compare
MMJJ_RS06760 -2.6 -6.4 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS04475 -2.6 -3.8 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04520 -2.6 -7.0 coenzyme F430 synthase compare
MMJJ_RS08005 -2.6 -16.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS00580 -2.6 -2.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03830 -2.6 -10.6 CBS domain-containing protein compare
MMJJ_RS02935 -2.5 -3.9 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS05810 -2.5 -7.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS04050 -2.5 -2.3 dihydroneopterin aldolase family protein compare
MMJJ_RS03055 -2.5 -3.8 hypothetical protein compare
MMJJ_RS07660 -2.5 -8.3 carbonic anhydrase compare
MMJJ_RS06805 -2.5 -3.2 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06485 -2.5 -3.3 phosphoglycerate kinase compare
MMJJ_RS05360 -2.5 -6.8 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS06855 -2.5 -1.5 DUF2104 domain-containing protein compare
MMJJ_RS04685 -2.4 -9.3 carbamoyltransferase HypF compare
MMJJ_RS03660 -2.4 -3.9 DUF447 family protein compare
MMJJ_RS05295 -2.4 -9.6 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS07945 -2.4 -3.7 4Fe-4S binding protein compare
MMJJ_RS00530 -2.4 -14.8 cobalt ECF transporter T component CbiQ compare
MMJJ_RS08155 -2.4 -4.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03800 -2.4 -11.0 aldolase compare
MMJJ_RS09175 -2.3 -1.8 anthranilate synthase component I compare
MMJJ_RS06185 -2.3 -7.1 cobalamin biosynthesis protein compare
MMJJ_RS07410 -2.3 -3.6 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS05930 -2.3 -1.7 cell division protein SepF compare
MMJJ_RS03815 -2.3 -2.2 nascent polypeptide-associated complex protein compare
MMJJ_RS03630 -2.3 -13.3 AMP phosphorylase compare
MMJJ_RS06270 -2.3 -9.8 dethiobiotin synthase compare
MMJJ_RS00515 -2.3 -11.8 cobalt transporter CbiM compare
MMJJ_RS04975 -2.3 -2.3 glycosyltransferase family 4 protein compare
MMJJ_RS03865 -2.3 -2.2 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS07155 -2.3 -9.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS08855 -2.3 -5.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS08095 -2.2 -4.9 cobyric acid synthase CobQ compare
MMJJ_RS06250 -2.2 -3.2 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS04675 -2.2 -5.7 thiamine pyrophosphate-binding protein compare
MMJJ_RS03785 -2.2 -2.6 hypothetical protein compare
MMJJ_RS05445 -2.2 -2.0 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03225 -2.2 -2.8 4Fe-4S binding protein compare
MMJJ_RS06835 -2.2 -10.5 4Fe-4S binding protein compare
MMJJ_RS01865 -2.2 -6.4 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS01200 -2.2 -3.5 PRC-barrel domain-containing protein compare
MMJJ_RS05375 -2.2 -13.3 radical SAM protein compare
MMJJ_RS05190 -2.2 -7.4 gamma carbonic anhydrase family protein compare
MMJJ_RS07980 -2.1 -11.0 biotin synthase BioB compare
MMJJ_RS03095 -2.1 -2.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS03200 -2.1 -2.6 uroporphyrinogen-III synthase compare
MMJJ_RS06225 -2.1 -2.4 adenosylmethionine decarboxylase compare
MMJJ_RS07430 -2.0 -4.6 ribonuclease VapC compare
MMJJ_RS07190 -2.0 -5.0 RtcB family protein compare
MMJJ_RS06730 -2.0 -5.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS05720 -2.0 -2.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS07960 -2.0 -2.1 quinolinate synthase NadA compare
MMJJ_RS08340 -2.0 -4.4 archaeoflavoprotein AfpA compare
MMJJ_RS01410 -2.0 -4.1 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS06215 -2.0 -4.4 agmatinase compare
MMJJ_RS07635 -1.9 -9.2 response regulator transcription factor compare
MMJJ_RS00040 -1.9 -6.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS00195 -1.9 -3.1 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS00205 -1.9 -4.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00070 -1.9 -4.6 CooT family nickel-binding protein compare
MMJJ_RS07000 -1.9 -1.8 TrkH family potassium uptake protein compare
MMJJ_RS00265 -1.9 -5.2 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS06880 -1.9 -1.5 EhaG family protein compare
MMJJ_RS00645 -1.9 -10.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08585 -1.9 -6.9 M42 family metallopeptidase compare
MMJJ_RS09375 -1.9 -1.8 hypothetical protein compare
MMJJ_RS04110 -1.9 -4.6 hypothetical protein compare
MMJJ_RS08620 -1.9 -2.7 DUF373 family protein compare
MMJJ_RS00035 -1.9 -13.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS06020 -1.9 -5.7 hypothetical protein compare
MMJJ_RS00125 -1.9 -2.4 KEOPS complex subunit Cgi121 compare
MMJJ_RS06050 -1.9 -8.7 molybdopterin molybdotransferase MoeA compare
MMJJ_RS01345 -1.9 -4.5 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS07840 -1.9 -2.3 Glu-tRNA(Gln) amidotransferase subunit GatD compare
MMJJ_RS07640 -1.8 -14.4 cache domain-containing protein compare
MMJJ_RS00045 -1.8 -9.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS04010 -1.8 -7.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS00060 -1.8 -11.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS00050 -1.8 -8.3 AAA family ATPase compare
MMJJ_RS06220 -1.8 -5.1 polyamine aminopropyltransferase compare
MMJJ_RS03125 -1.8 -3.9 GMC oxidoreductase compare
MMJJ_RS03635 -1.8 -2.6 methionine--tRNA ligase compare
MMJJ_RS00055 -1.8 -8.2 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS07650 -1.7 -11.6 formate/nitrite transporter family protein compare
MMJJ_RS00600 -1.7 -3.3 hydroxymethylbilane synthase compare
MMJJ_RS02055 -1.7 -10.5 GTP 3',8-cyclase MoaA compare
MMJJ_RS06180 -1.7 -3.3 tryptophan--tRNA ligase compare
MMJJ_RS05225 -1.7 -1.8 Gar1/Naf1 family protein compare
MMJJ_RS09095 -1.7 -8.6 MMPL family transporter compare
MMJJ_RS01830 -1.7 -2.4 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS05540 -1.7 -12.3 LysR family transcriptional regulator compare
MMJJ_RS00075 -1.7 -8.4 AAA family ATPase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms