Experiment set4IT078 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

2-Deoxy-D-Ribose 10 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_01184 +1.6 2.1 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_05920 +1.6 7.0 transcriptional regulator, LacI family compare
H281DRAFT_02683 +1.5 2.1 xanthine dehydrogenase accessory factor compare
H281DRAFT_01112 +1.4 3.8 deoxynucleoside transporter, permease component 2 (from data) compare
H281DRAFT_00298 +1.3 2.0 hypothetical protein compare
H281DRAFT_06120 +1.2 1.5 hypothetical protein compare
H281DRAFT_01115 +1.2 4.7 deoxynucleoside transporter, permease component 1 (from data) compare
H281DRAFT_01311 +1.1 2.5 fructose-bisphosphate aldolase compare
H281DRAFT_03440 +1.1 1.7 PAP2 superfamily protein compare
H281DRAFT_05778 +1.1 2.2 flagellar motor switch protein FliN/FliY compare
H281DRAFT_01114 +1.1 3.2 deoxynucleoside transporter, substrate-binding component (from data) compare
H281DRAFT_06511 +1.0 1.7 reactive intermediate/imine deaminase compare
H281DRAFT_00601 +1.0 2.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_05967 +1.0 1.8 Cupredoxin-like domain-containing protein compare
H281DRAFT_02791 +1.0 1.8 apolipoprotein D and lipocalin family protein compare
H281DRAFT_00386 +1.0 2.8 hypothetical protein compare
H281DRAFT_01390 +1.0 1.6 hypothetical protein compare
H281DRAFT_02052 +0.9 2.0 hypothetical protein compare
H281DRAFT_05210 +0.9 1.4 Sugar phosphate isomerase/epimerase compare
H281DRAFT_05753 +0.9 4.6 flagellar biosynthesis protein FlhA compare
H281DRAFT_03220 +0.9 2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_01689 +0.9 1.8 transcriptional regulator, AraC family with amidase-like domain compare
H281DRAFT_01262 +0.9 2.0 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_00658 +0.9 2.1 transcriptional regulator, IclR family compare
H281DRAFT_00379 +0.9 1.3 dihydroorotate oxidase B, catalytic subunit /dihydrouracil dehydrogenase (NAD+) /dihydropyrimidine dehydrogenase (NADP+) compare
H281DRAFT_01223 +0.9 3.1 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_03147 +0.9 1.5 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_01767 +0.9 1.4 hypothetical protein compare
H281DRAFT_03159 +0.9 1.3 hypothetical protein compare
H281DRAFT_05775 +0.9 4.7 flagellar biosynthetic protein FliQ compare
H281DRAFT_00487 +0.8 1.4 bacterial peptide chain release factor 2 (bRF-2) compare
H281DRAFT_04869 +0.8 2.0 imidazolonepropionase compare
H281DRAFT_02736 +0.8 1.6 uncharacterized peroxidase-related enzyme compare
H281DRAFT_04492 +0.8 5.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_01305 +0.8 2.1 hypothetical protein compare
H281DRAFT_05766 +0.8 1.6 flagellar basal-body rod protein FlgF compare
H281DRAFT_01621 +0.8 1.7 transcriptional regulator, AraC family compare
H281DRAFT_05005 +0.8 1.6 type III secretion protein HrpB1 compare
H281DRAFT_05248 +0.8 1.5 hypothetical protein compare
H281DRAFT_01880 +0.8 1.5 two component transcriptional regulator, LuxR family compare
H281DRAFT_00397 +0.8 1.8 GreA/GreB family elongation factor compare
H281DRAFT_06253 +0.8 3.1 cell division protein ZapD compare
H281DRAFT_01457 +0.8 2.5 hypothetical protein compare
H281DRAFT_05438 +0.8 1.3 transcriptional regulator, IclR family compare
H281DRAFT_01701 +0.7 1.8 hypothetical protein compare
H281DRAFT_04857 +0.7 1.3 hypothetical protein compare
H281DRAFT_05752 +0.7 3.7 flagellar biosynthetic protein FlhB compare
H281DRAFT_06576 +0.7 1.8 CheY chemotaxis protein or a CheY-like REC (receiver) domain compare
H281DRAFT_01838 +0.7 3.2 regulator RcnB of Ni and Co efflux compare
H281DRAFT_03717 +0.7 1.4 Rhodanese-related sulfurtransferase compare
H281DRAFT_03142 +0.7 2.3 Lipid-binding SYLF domain-containing protein compare
H281DRAFT_02224 +0.7 1.8 rod shape-determining protein MreC compare
H281DRAFT_02952 +0.7 1.7 fructuronate reductase compare
H281DRAFT_03061 +0.7 2.0 hypothetical protein compare
H281DRAFT_05274 +0.7 1.3 Uncharacterized protein YcsI, UPF0317 family compare
H281DRAFT_02702 +0.7 1.7 dihydroxyacetone kinase DhaK subunit compare
H281DRAFT_01002 +0.7 1.2 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_05784 +0.7 2.2 flagellar assembly protein FliH compare
H281DRAFT_02818 +0.7 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_01331 +0.7 2.3 pyrroloquinoline-quinone synthase compare
H281DRAFT_05763 +0.7 4.0 flagellar basal-body rod protein FlgC compare
H281DRAFT_01436 +0.7 1.3 NTE family protein compare
H281DRAFT_02968 +0.7 1.5 amidase compare
H281DRAFT_01145 +0.7 1.5 hopanoid biosynthesis associated protein HpnK compare
H281DRAFT_05769 +0.7 4.3 flagellar P-ring protein precursor FlgI compare
H281DRAFT_03460 +0.7 0.9 Protein of unknown function (DUF2950) compare
H281DRAFT_02753 +0.7 1.4 Predicted dehydrogenase compare
H281DRAFT_00348 +0.7 1.9 membrane fusion protein, multidrug efflux system compare
H281DRAFT_00752 +0.7 2.9 hypothetical protein compare
H281DRAFT_03303 +0.7 1.4 NAD+ synthase (glutamine-hydrolysing) compare
H281DRAFT_04779 +0.7 2.7 colanic acid biosynthesis glycosyl transferase WcaI compare
H281DRAFT_00731 +0.7 1.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_04611 +0.7 2.5 Diadenosine tetraphosphate (Ap4A) hydrolase compare
H281DRAFT_00678 +0.6 2.5 hypothetical protein compare
H281DRAFT_01025 +0.6 1.0 transcriptional regulator, MarR family compare
H281DRAFT_01007 +0.6 1.6 hypothetical protein compare
H281DRAFT_05159 +0.6 2.2 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
H281DRAFT_01812 +0.6 2.0 Short-chain dehydrogenase compare
H281DRAFT_00728 +0.6 1.9 Predicted N-acyltransferase, GNAT family compare
H281DRAFT_03790 +0.6 1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
H281DRAFT_03695 +0.6 2.3 glutathione S-transferase compare
H281DRAFT_05371 +0.6 2.2 OmpA-OmpF porin, OOP family compare
H281DRAFT_05289 +0.6 1.1 N-hydroxyarylamine O-acetyltransferase compare
H281DRAFT_04002 +0.6 1.5 tRNA_Arg_ACG compare
H281DRAFT_05768 +0.6 2.0 flagellar L-ring protein precursor FlgH compare
H281DRAFT_05776 +0.6 3.0 flagellar biosynthetic protein FliP compare
H281DRAFT_05914 +0.6 2.3 hypothetical protein compare
H281DRAFT_04390 +0.6 4.5 ATP-binding cassette, subfamily B compare
H281DRAFT_05465 +0.6 2.2 hypothetical protein compare
H281DRAFT_02188 +0.6 2.8 hypothetical protein compare
H281DRAFT_04781 +0.6 0.9 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_01270 +0.6 2.7 Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains compare
H281DRAFT_05961 +0.6 1.0 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_05756 +0.6 1.5 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
H281DRAFT_05456 +0.6 2.1 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase compare
H281DRAFT_04228 +0.6 3.5 homodimeric glycerol 3-phosphate dehydrogenase (quinone) compare
H281DRAFT_04391 +0.6 4.1 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05991 +0.6 1.3 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase compare
H281DRAFT_02503 +0.6 1.2 Peroxiredoxin compare
H281DRAFT_06329 +0.6 2.6 transcriptional regulator, AraC family compare
H281DRAFT_05079 +0.6 2.3 small conductance mechanosensitive channel compare
H281DRAFT_06581 +0.6 1.7 NADP-dependent 3-hydroxy acid dehydrogenase YdfG compare
H281DRAFT_02170 +0.6 1.3 Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family compare
H281DRAFT_03990 +0.6 1.2 addiction module antidote protein, HigA family compare
H281DRAFT_02644 +0.6 1.9 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase compare
H281DRAFT_01927 +0.6 4.8 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_03869 +0.6 1.7 hypothetical protein compare
H281DRAFT_05721 +0.6 4.1 acyl-CoA thioesterase compare
H281DRAFT_04883 +0.6 1.2 L-lysine exporter family protein LysE/ArgO compare
H281DRAFT_05901 +0.6 1.1 Cupin domain-containing protein compare
H281DRAFT_01409 +0.6 2.3 acetate kinase compare
H281DRAFT_04855 +0.6 1.0 hypothetical protein compare
H281DRAFT_05765 +0.6 4.3 flagellar hook protein FlgE compare
H281DRAFT_02651 +0.6 0.9 transcriptional regulator, MerR family compare
H281DRAFT_00893 +0.6 1.4 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_05445 +0.6 1.2 protein of unknown function (DUF4440) compare
H281DRAFT_00695 +0.6 1.3 choline-sulfatase compare
H281DRAFT_02892 +0.6 1.3 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
H281DRAFT_01489 +0.6 1.7 hypothetical protein compare
H281DRAFT_05376 +0.6 1.0 hypothetical protein compare
H281DRAFT_02178 +0.6 2.5 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_01906 +0.6 1.2 cytochrome c oxidase subunit 2 compare
H281DRAFT_05770 +0.6 3.2 flagellar protein FlgJ compare
H281DRAFT_01061 +0.6 1.2 hypothetical protein compare
H281DRAFT_00896 +0.6 1.4 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_01590 +0.6 1.2 hypothetical protein compare
H281DRAFT_03619 +0.6 2.4 dihydroflavonol-4-reductase compare
H281DRAFT_03896 +0.6 1.8 hypothetical protein compare
H281DRAFT_01766 +0.6 1.1 cytochrome c oxidase subunit 2 compare
H281DRAFT_05408 +0.6 2.2 putative spermidine/putrescine transport system substrate-binding protein compare
H281DRAFT_06109 +0.6 1.4 3-oxoacyl-[acyl-carrier protein] reductase compare
H281DRAFT_03437 +0.6 1.7 Glycosyltransferases involved in cell wall biogenesis compare
H281DRAFT_00285 +0.5 1.8 PhnB protein compare
H281DRAFT_06164 +0.5 1.8 protein of unknown function (DUF4400) compare
H281DRAFT_03409 +0.5 0.9 Protein of unknown function (DUF3072) compare
H281DRAFT_04584 +0.5 1.8 transcriptional regulator, AlpA family compare
H281DRAFT_02922 +0.5 1.1 transcriptional regulator, AraC family compare
H281DRAFT_03144 +0.5 1.6 putative phosphoesterase compare
H281DRAFT_01391 +0.5 1.5 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_01232 +0.5 1.5 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_01829 +0.5 1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
H281DRAFT_00441 +0.5 1.8 hypothetical protein compare
H281DRAFT_00972 +0.5 0.9 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase compare
H281DRAFT_03488 +0.5 2.5 Predicted amidohydrolase compare
H281DRAFT_00961 +0.5 1.3 hypothetical protein compare
H281DRAFT_04805 +0.5 1.4 methyltransferase, FkbM family compare
H281DRAFT_04996 +0.5 1.2 type III secretion protein C compare
H281DRAFT_01882 +0.5 1.8 Lipid-binding SYLF domain-containing protein compare
H281DRAFT_01322 +0.5 0.8 Predicted ATP-dependent carboligase, ATP-grasp superfamily compare
H281DRAFT_02346 +0.5 1.2 general secretion pathway protein M compare
H281DRAFT_04050 +0.5 1.2 beta-aspartyl-peptidase (threonine type) compare
H281DRAFT_05673 +0.5 2.2 stringent starvation protein B compare
H281DRAFT_01486 +0.5 1.8 hypothetical protein compare
H281DRAFT_00740 +0.5 2.0 Predicted dehydrogenase compare
H281DRAFT_01661 +0.5 2.7 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00242 +0.5 1.7 hypothetical protein compare
H281DRAFT_00377 +0.5 1.0 N-carbamoyl-L-amino-acid hydrolase compare
H281DRAFT_05767 +0.5 1.2 flagellar basal-body rod protein FlgG compare
H281DRAFT_05779 +0.5 3.3 flagellar motor switch protein FliM compare
H281DRAFT_05221 +0.5 1.8 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_03700 +0.5 2.4 acyl-CoA dehydrogenase compare
H281DRAFT_00748 +0.5 1.1 Uncharacterized protein, UPF0303 family compare
H281DRAFT_06069 +0.5 1.7 tRNA pseudouridine38-40 synthase compare
H281DRAFT_00255 +0.5 1.1 hypothetical protein compare
H281DRAFT_01101 +0.5 1.2 Small-conductance mechanosensitive channel compare
H281DRAFT_02950 +0.5 1.1 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_03489 +0.5 2.5 Acyl-CoA dehydrogenase compare
H281DRAFT_01775 +0.5 1.0 Putative intracellular protease/amidase compare
H281DRAFT_03345 +0.5 1.4 NHL repeat-containing protein compare
H281DRAFT_05754 +0.5 1.5 flagellar biosynthesis protein FlhF compare
H281DRAFT_05785 +0.5 3.5 flagellar motor switch protein FliG compare
H281DRAFT_06369 +0.5 1.7 tight adherence protein B compare
H281DRAFT_04858 +0.5 0.7 hypothetical protein compare
H281DRAFT_02718 +0.5 1.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_00240 +0.5 3.5 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_00278 +0.5 1.3 Outer membrane protein OmpA compare
H281DRAFT_00179 +0.5 2.6 nucleobase:cation symporter-1, NCS1 family compare
H281DRAFT_04201 +0.5 0.6 O-antigen ligase compare
H281DRAFT_03326 +0.5 2.4 PAS domain S-box-containing protein compare
H281DRAFT_06547 +0.5 0.7 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_06285 +0.5 0.9 3-dehydroquinate dehydratase compare
H281DRAFT_06003 +0.5 1.3 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_03389 +0.5 1.7 transcriptional regulator, LysR family compare
H281DRAFT_05761 +0.5 2.6 flagella basal body P-ring formation protein FlgA compare
H281DRAFT_02727 +0.5 1.9 transcriptional regulator, LysR family compare
H281DRAFT_05350 +0.5 2.0 Signal transduction histidine kinase compare
H281DRAFT_05976 +0.5 1.8 D-galactonate transporter compare
H281DRAFT_00722 +0.5 0.8 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_02232 +0.5 2.8 preQ(0) biosynthesis protein QueC compare
H281DRAFT_02548 +0.5 1.0 Uncharacterized membrane protein YoaK, UPF0700 family compare
H281DRAFT_03484 +0.5 2.2 osmoprotectant transport system permease protein compare
H281DRAFT_00780 +0.5 2.1 sulfate transport system permease protein compare
H281DRAFT_01310 +0.5 1.3 ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) compare
H281DRAFT_05502 +0.5 1.2 transketolase subunit B compare
H281DRAFT_04901 +0.5 1.6 microcin C transport system permease protein compare
H281DRAFT_06204 +0.5 2.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
H281DRAFT_03683 +0.5 1.9 transcriptional regulator, LysR family compare
H281DRAFT_01360 +0.5 1.3 transcriptional regulator, TetR family compare
H281DRAFT_02332 +0.5 1.2 L-arabinose-binding protein compare
H281DRAFT_02585 +0.5 2.3 FAD/FMN-containing dehydrogenase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia bryophila 376MFSha3.1 in carbon source experiments

For carbon source 2-Deoxy-D-Ribose across organisms