Experiment set4IT077 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 30 mM

200 most important genes:

  gene name fitness t score description  
AO353_12990 -3.6 -5.5 multidrug DMT transporter conserved
AO353_22685 -3.6 -3.5 peroxidase compare
AO353_04825 -3.5 -7.0 hypothetical protein compare
AO353_06335 -3.2 -16.4 AMP nucleosidase compare
AO353_04830 -2.7 -6.1 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_00825 -2.6 -4.6 porin compare
AO353_09315 -2.6 -11.6 LysR family transcriptional regulator compare
AO353_16940 -2.6 -5.7 deoxycytidine triphosphate deaminase compare
AO353_00430 -2.6 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_14940 -2.5 -3.4 malate:quinone oxidoreductase compare
AO353_06455 -2.5 -3.7 D-alanyl-D-alanine carboxypeptidase compare
AO353_04840 -2.5 -10.4 RND transporter compare
AO353_03615 -2.5 -3.3 cold-shock protein compare
AO353_04835 -2.5 -11.1 fusaric acid resistance protein compare
AO353_03580 -2.5 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_20185 -2.4 -6.2 DNA-binding protein compare
AO353_19020 -2.4 -3.0 hypothetical protein compare
AO353_22800 -2.4 -3.7 sulfite reductase compare
AO353_00310 -2.3 -8.9 transaldolase compare
AO353_14775 -2.3 -6.5 hypothetical protein compare
AO353_15465 -2.3 -6.0 cytochrome C oxidase compare
AO353_04190 -2.3 -2.6 glycerol-3-phosphate dehydrogenase compare
AO353_03795 -2.3 -4.3 fumarate hydratase compare
AO353_12105 -2.2 -5.9 peptidase S41 compare
AO353_15455 -2.2 -12.5 cytochrome o ubiquinol oxidase subunit I compare
AO353_05420 -2.2 -2.9 peptide chain release factor 3 compare
AO353_03590 -2.2 -4.5 crossover junction endodeoxyribonuclease RuvC compare
AO353_11730 -2.2 -9.4 glutamate--cysteine ligase compare
AO353_08115 -2.2 -6.0 energy transducer TonB compare
AO353_13160 -2.2 -2.1 membrane protease HflC compare
AO353_18540 -2.1 -3.4 pseudouridine synthase compare
AO353_20565 -2.1 -2.4 tRNA-Ala compare
AO353_21625 -2.1 -3.0 Fe/S biogenesis protein NfuA compare
AO353_14370 -2.1 -6.3 glucose-6-phosphate isomerase compare
AO353_24125 -2.1 -6.7 hypothetical protein compare
AO353_12690 -2.1 -1.2 acyl carrier protein compare
AO353_15470 -2.1 -11.3 protoheme IX farnesyltransferase compare
AO353_06040 -2.0 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_15260 -2.0 -5.9 stringent starvation protein A compare
AO353_12115 -2.0 -3.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_07315 -2.0 -3.6 rRNA methyltransferase compare
AO353_12650 -2.0 -1.7 hypothetical protein compare
AO353_01975 -2.0 -7.1 glycosyl transferase compare
AO353_10930 -1.9 -7.8 DNA polymerase I compare
AO353_02945 -1.9 -7.9 magnesium transporter compare
AO353_12500 -1.9 -2.7 shikimate kinase compare
AO353_08165 -1.9 -2.9 pyrroline-5-carboxylate reductase compare
AO353_19360 -1.9 -2.7 peroxiredoxin compare
AO353_15905 -1.9 -6.4 outer membrane protein assembly factor BamB compare
AO353_08980 -1.9 -3.4 heme biosynthesis operon protein HemX compare
AO353_01410 -1.8 -3.3 ribonuclease E compare
AO353_06365 -1.8 -9.4 hypothetical protein compare
AO353_14485 -1.8 -2.2 pseudouridine synthase compare
AO353_09865 -1.8 -10.2 hypothetical protein compare
AO353_07075 -1.8 -5.2 elongation factor Tu compare
AO353_14150 -1.8 -1.6 peptidylprolyl isomerase compare
AO353_20865 -1.7 -2.7 cold-shock protein compare
AO353_06490 -1.7 -4.1 nicotinate-nucleotide adenylyltransferase compare
AO353_17885 -1.7 -1.3 hypothetical protein compare
AO353_12345 -1.7 -2.2 twin-arginine protein translocation system subunit TatC compare
AO353_10445 -1.7 -2.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_09000 -1.7 -5.3 argininosuccinate lyase compare
AO353_09050 -1.7 -4.2 recombinase XerC compare
AO353_23495 -1.7 -2.3 SAM-dependent methyltransferase compare
AO353_02440 -1.7 -9.7 peptidase S41 compare
AO353_04565 -1.7 -5.8 nucleoid-associated protein compare
AO353_17640 -1.7 -2.8 serine peptidase compare
AO353_05880 -1.7 -2.8 plasmid stabilization protein compare
AO353_13925 -1.6 -2.5 XRE family transcriptional regulator compare
AO353_06415 -1.6 -3.8 hypothetical protein compare
AO353_09135 -1.6 -2.6 cytochrome C compare
AO353_15460 -1.6 -6.5 cytochrome o ubiquinol oxidase subunit III compare
AO353_11750 -1.6 -2.5 ATPase compare
AO353_24130 -1.6 -3.1 hypothetical protein compare
AO353_11340 -1.6 -1.9 MarR family transcriptional regulator compare
AO353_04355 -1.6 -2.4 homoserine dehydrogenase compare
AO353_15250 -1.6 -3.4 cytochrome B compare
AO353_25925 -1.6 -2.4 hypothetical protein compare
AO353_09905 -1.6 -8.1 phosphate-binding protein compare
AO353_00510 -1.6 -5.1 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_06585 -1.5 -6.8 hypothetical protein compare
AO353_09045 -1.5 -2.2 hypothetical protein compare
AO353_06045 -1.5 -6.1 exodeoxyribonuclease V subunit beta compare
AO353_20170 -1.5 -4.7 trigger factor compare
AO353_14740 -1.5 -3.4 GTP-binding protein compare
AO353_04175 -1.5 -4.6 glycerol uptake facilitator GlpF compare
AO353_04845 -1.4 -8.2 LysR family transcriptional regulator compare
AO353_27695 -1.4 -6.2 isocitrate dehydrogenase compare
AO353_18225 -1.4 -7.5 ATP-dependent RNA helicase HrpA compare
AO353_05145 -1.4 -4.8 ABC transporter permease compare
AO353_05135 -1.4 -6.7 toluene tolerance protein compare
AO353_04520 -1.4 -4.4 elongation factor 4 compare
AO353_00330 -1.4 -6.6 hypothetical protein compare
AO353_05690 -1.4 -3.1 SsrA-binding protein compare
AO353_12935 -1.4 -3.6 glycosyltransferase compare
AO353_06495 -1.4 -4.5 gamma-glutamyl phosphate reductase compare
AO353_27650 -1.4 -3.7 cell division protein FtsK compare
AO353_17300 -1.4 -6.1 antibiotic transporter compare
AO353_00750 -1.3 -3.2 GntR family transcriptional regulator compare
AO353_13100 -1.3 -1.9 GTPase RsgA compare
AO353_14115 -1.3 -5.3 gamma-glutamyl kinase compare
AO353_19625 -1.3 -3.6 isopentenyl-diphosphate delta-isomerase compare
AO353_05140 -1.3 -5.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_00620 -1.3 -2.1 cytochrome C oxidase Cbb3 compare
AO353_09250 -1.3 -3.0 exodeoxyribonuclease III compare
AO353_28425 -1.3 -3.3 TetR family transcriptional regulator compare
AO353_27380 -1.3 -2.0 pyocin R2, holin compare
AO353_12130 -1.3 -4.3 preprotein translocase subunit SecB compare
AO353_10440 -1.3 -4.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_17295 -1.3 -10.2 multidrug transporter compare
AO353_23450 -1.3 -2.8 LysR family transcriptional regulator compare
AO353_29280 -1.3 -3.1 hypothetical protein compare
AO353_09320 -1.3 -6.9 ATP-dependent DNA helicase RecG compare
AO353_03360 -1.3 -6.1 glucose-6-phosphate dehydrogenase compare
AO353_10945 -1.2 -2.7 cytochrome C compare
AO353_10670 -1.2 -5.3 shikimate dehydrogenase compare
AO353_19060 -1.2 -4.0 CysB family transcriptional regulator compare
AO353_15285 -1.2 -7.7 hypothetical protein compare
AO353_16805 -1.2 -4.5 recombinase RecA compare
AO353_08105 -1.2 -4.2 pilus assembly protein PilG compare
AO353_14420 -1.2 -3.4 molecular chaperone DnaK compare
AO353_23790 -1.2 -2.7 metal-binding protein compare
AO353_00650 -1.2 -1.8 cytochrome biogenesis protein compare
AO353_08110 -1.2 -4.7 glutathione synthetase compare
AO353_07910 -1.2 -1.5 hypothetical protein compare
AO353_27950 -1.2 -1.8 hypothetical protein compare
AO353_18325 -1.2 -2.3 hypothetical protein compare
AO353_26870 -1.2 -2.8 AP endonuclease compare
AO353_12110 -1.2 -5.6 peptidase M23 compare
AO353_15885 -1.2 -3.9 Cro/Cl family transcriptional regulator compare
AO353_05150 -1.2 -3.7 ABC transporter ATP-binding protein compare
AO353_11075 -1.2 -8.5 acetyl-CoA hydrolase conserved
AO353_27720 -1.2 -3.3 cupin compare
AO353_26390 -1.2 -2.2 glyoxalase compare
AO353_13225 -1.2 -2.8 50S ribosomal protein L9 compare
AO353_17635 -1.2 -5.8 RNA polymerase subunit sigma compare
AO353_15830 -1.1 -1.8 transcriptional regulator compare
AO353_18780 -1.1 -4.8 cobyrinic acid a,c-diamide synthase compare
AO353_23015 -1.1 -3.4 histidine kinase compare
AO353_17035 -1.1 -4.2 hypothetical protein compare
AO353_16415 -1.1 -7.1 beta-(1-3)-glucosyl transferase compare
AO353_00890 -1.1 -3.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_07325 -1.1 -1.8 diadenosine tetraphosphatase compare
AO353_06050 -1.1 -4.8 exodeoxyribonuclease V subunit gamma compare
AO353_26440 -1.1 -2.9 hypothetical protein compare
AO353_04035 -1.1 -2.4 exclusion suppressor FxsA compare
AO353_10900 -1.1 -5.9 hypothetical protein compare
AO353_21990 -1.1 -3.3 cytochrome C compare
AO353_17290 -1.1 -4.0 multidrug transporter compare
AO353_20175 -1.1 -2.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_07155 -1.1 -4.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_03520 -1.1 -2.4 hypothetical protein compare
AO353_03295 -1.1 -7.6 ribonuclease BN compare
AO353_03585 -1.1 -2.5 ATP-dependent DNA helicase RuvA compare
AO353_11190 -1.1 -7.5 ABC transporter compare
AO353_05125 -1.1 -3.8 BolA family transcriptional regulator compare
AO353_02300 -1.1 -2.3 MarR family transcriptional regulator compare
AO353_21935 -1.1 -1.9 nitrite reductase compare
AO353_06775 -1.1 -4.1 dTDP-4-dehydrorhamnose reductase compare
AO353_07290 -1.1 -5.3 mannose-1-phosphate guanylyltransferase compare
AO353_01215 -1.1 -6.0 hypothetical protein compare
AO353_15450 -1.0 -6.9 ubiquinol oxidase subunit II compare
AO353_26055 -1.0 -2.1 hypothetical protein compare
AO353_20785 -1.0 -3.7 carbon storage regulator CsrA compare
AO353_18655 -1.0 -2.5 flagellar assembly protein FliT compare
AO353_18660 -1.0 -5.6 AAA family ATPase compare
AO353_02720 -1.0 -4.2 cysteine synthase compare
AO353_03710 -1.0 -1.8 formyltetrahydrofolate deformylase compare
AO353_06850 -1.0 -2.7 MFS transporter compare
AO353_19145 -1.0 -3.3 protease HtpX compare
AO353_18960 -1.0 -1.9 terminase compare
AO353_13800 -1.0 -2.9 hypothetical protein compare
AO353_16825 -1.0 -3.9 hypothetical protein compare
AO353_16915 -1.0 -6.5 hypothetical protein compare
AO353_09240 -1.0 -2.5 acetylglutamate kinase compare
AO353_08875 -1.0 -1.5 amino acid ABC transporter ATP-binding protein compare
AO353_11180 -1.0 -8.7 large adhesive protein compare
AO353_19605 -1.0 -1.7 hypothetical protein compare
AO353_16810 -1.0 -2.3 recombinase RecX compare
AO353_02235 -1.0 -3.8 acireductone dioxygenase compare
AO353_01725 -1.0 -2.2 phosphohistidine phosphatase compare
AO353_27155 -1.0 -1.1 hypothetical protein compare
AO353_11915 -1.0 -4.6 agmatine deiminase compare
AO353_03000 -1.0 -2.3 topoisomerase II compare
AO353_00760 -1.0 -1.6 hypothetical protein compare
AO353_13140 -1.0 -3.6 tRNA dimethylallyltransferase compare
AO353_00515 -1.0 -2.0 hypothetical protein compare
AO353_07940 -1.0 -2.7 hypothetical protein compare
AO353_10055 -1.0 -6.4 DNA helicase II compare
AO353_27725 -1.0 -1.6 GNAT family acetyltransferase compare
AO353_07610 -1.0 -1.0 hypothetical protein compare
AO353_02480 -1.0 -5.2 peptidylprolyl isomerase compare
AO353_00900 -1.0 -5.0 2-methylisocitrate lyase compare
AO353_21805 -0.9 -2.0 peptidylprolyl isomerase compare
AO353_10905 -0.9 -5.4 zinc ABC transporter ATP-binding protein compare
AO353_08600 -0.9 -3.0 TetR family transcriptional regulator compare
AO353_23935 -0.9 -3.1 hypothetical protein compare
AO353_28555 -0.9 -1.7 LysR family transcriptional regulator compare
AO353_10915 -0.9 -6.1 ABC transporter substrate-binding protein compare
AO353_17855 -0.9 -2.0 ribonuclease D compare


Specific Phenotypes

For 12 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas fluorescens FW300-N2E3

For stress 1-ethyl-3-methylimidazolium acetate across organisms