Experiment set4IT077 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 30 mM

200 most detrimental genes:

  gene name fitness t score description  
AO353_11530 +2.8 16.8 diguanylate cyclase compare
AO353_17750 +2.5 8.8 transcriptional regulator compare
AO353_02395 +2.5 20.9 mechanosensitive ion channel protein conserved
AO353_08835 +2.5 16.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO353_02940 +2.0 4.0 DNA-binding protein compare
AO353_07470 +1.8 11.9 acetylornithine aminotransferase compare
AO353_18775 +1.6 5.5 flagellar biosynthesis protein FlhF compare
AO353_02195 +1.5 3.9 spermidine synthase compare
AO353_17625 +1.4 8.0 RNA polymerase subunit sigma compare
AO353_04220 +1.4 5.3 chemotaxis protein CheY compare
AO353_01375 +1.3 5.5 phosphate acyltransferase compare
AO353_07480 +1.3 7.3 LysR family transcriptional regulator compare
AO353_18730 +1.3 5.1 flagellar motor switch protein FliM compare
AO353_09115 +1.3 6.3 diguanylate cyclase compare
AO353_07475 +1.2 5.4 sulfurase compare
AO353_08620 +1.2 1.9 hypothetical protein compare
AO353_23910 +1.2 2.8 response regulator compare
AO353_10540 +1.1 8.6 aminobenzoate oxygenase compare
AO353_18745 +1.1 1.8 flagellar biosynthesis protein flip compare
AO353_10545 +1.0 6.8 ferredoxin compare
AO353_10550 +1.0 3.1 glutamine amidotransferase compare
AO353_17005 +1.0 3.2 hypothetical protein compare
AO353_10510 +1.0 2.5 benzoate transporter compare
AO353_12135 +1.0 4.2 rRNA methylase compare
AO353_03100 +1.0 2.7 XRE family transcriptional regulator compare
AO353_21410 +1.0 1.8 hypothetical protein compare
AO353_23485 +1.0 6.2 lytic transglycosylase compare
AO353_00700 +1.0 4.3 Cro/Cl family transcriptional regulator compare
AO353_21620 +1.0 7.4 peptidylprolyl isomerase compare
AO353_18765 +1.0 2.4 hypothetical protein compare
AO353_01915 +1.0 1.5 GlcG protein compare
AO353_24340 +0.9 1.9 TetR family transcriptional regulator compare
AO353_16495 +0.9 3.3 zinc metallopeptidase RseP compare
AO353_01355 +0.9 5.3 3-oxoacyl-ACP synthase compare
AO353_28860 +0.9 2.6 hypothetical protein compare
AO353_09745 +0.9 1.8 hypothetical protein compare
AO353_05090 +0.9 5.7 2-alkenal reductase compare
AO353_26990 +0.9 2.4 hypothetical protein compare
AO353_10535 +0.9 5.6 MFS transporter compare
AO353_27060 +0.8 3.2 XshC-Cox1 family protein compare
AO353_24440 +0.8 1.5 reactive intermediate/imine deaminase compare
AO353_08730 +0.8 4.5 glycine cleavage system protein H compare
AO353_02905 +0.8 5.0 histidine kinase compare
AO353_22600 +0.8 2.1 hypothetical protein compare
AO353_28815 +0.8 2.2 hypothetical protein compare
AO353_24830 +0.8 2.9 enoyl-CoA hydratase compare
AO353_03430 +0.8 2.0 methylglyoxal synthase compare
AO353_22695 +0.8 2.8 LysR family transcriptional regulator compare
AO353_20410 +0.8 2.1 hypothetical protein compare
AO353_12580 +0.8 2.0 type II secretory protein PulK compare
AO353_19000 +0.8 2.0 ABC transporter compare
AO353_18685 +0.8 4.2 flagellar motor switch protein FliG compare
AO353_00495 +0.8 1.8 DNA topoisomerase I compare
AO353_06725 +0.8 1.0 hypothetical protein compare
AO353_24685 +0.8 1.8 hypothetical protein compare
AO353_12060 +0.8 1.9 acetyltransferase compare
AO353_09785 +0.8 2.0 hypothetical protein compare
AO353_22985 +0.7 2.3 hypothetical protein compare
AO353_01190 +0.7 1.6 hypothetical protein compare
AO353_09720 +0.7 1.0 hypothetical protein compare
AO353_27615 +0.7 3.5 hypothetical protein compare
AO353_16345 +0.7 1.9 energy transducer TonB compare
AO353_04795 +0.7 2.6 multidrug transporter compare
AO353_22930 +0.7 2.1 hypothetical protein compare
AO353_11255 +0.7 2.6 RND transporter compare
AO353_27160 +0.7 1.8 Pathogenicity locus compare
AO353_15065 +0.7 2.1 XRE family transcriptional regulator compare
AO353_09215 +0.7 5.9 peptide ABC transporter substrate-binding protein compare
AO353_02900 +0.7 3.8 glutamate--ammonia ligase compare
AO353_16155 +0.7 1.6 antibiotic biosynthesis monooxygenase compare
AO353_11525 +0.7 2.6 aminotransferase compare
AO353_09395 +0.7 2.2 type VI secretion protein compare
AO353_12790 +0.7 1.4 hypothetical protein compare
AO353_07190 +0.7 4.9 S-adenosylmethionine decarboxylase proenzyme compare
AO353_02920 +0.7 2.8 serine recombinase compare
AO353_26210 +0.7 2.6 hypothetical protein compare
AO353_02570 +0.7 2.4 hypothetical protein compare
AO353_08060 +0.7 1.7 hypothetical protein compare
AO353_21110 +0.7 1.2 hypothetical protein compare
AO353_01135 +0.7 0.9 enoyl-CoA hydratase compare
AO353_03150 +0.7 1.6 peptidase M4 compare
AO353_12850 +0.7 5.0 diguanylate cyclase compare
AO353_18770 +0.7 3.5 flagellar biosynthesis protein FlhA compare
AO353_29270 +0.7 1.5 type VI secretion system protein compare
AO353_26950 +0.7 2.4 hypothetical protein compare
AO353_01015 +0.7 1.6 hypothetical protein compare
AO353_18680 +0.7 2.8 flagellar M-ring protein FliF compare
AO353_16980 +0.7 1.6 isochorismatase compare
AO353_11965 +0.7 2.8 hypothetical protein compare
AO353_00115 +0.7 1.4 hypothetical protein compare
AO353_17100 +0.7 2.1 hypothetical protein compare
AO353_28515 +0.7 3.3 malate:quinone oxidoreductase compare
AO353_16030 +0.7 2.6 peptidase inhibitor I42 compare
AO353_09475 +0.6 2.0 hypothetical protein compare
AO353_11455 +0.6 1.1 hypothetical protein compare
AO353_25940 +0.6 2.5 hypothetical protein compare
AO353_16440 +0.6 1.6 ArsC family transcriptional regulator compare
AO353_09155 +0.6 3.5 amino acid dehydrogenase compare
AO353_27665 +0.6 3.9 arginyl-tRNA-protein transferase compare
AO353_18630 +0.6 3.2 beta-ketoacyl-ACP synthase compare
AO353_28315 +0.6 2.3 3-demethylubiquinone-9 3-methyltransferase compare
AO353_22645 +0.6 1.6 hypothetical protein compare
AO353_01810 +0.6 3.6 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_06525 +0.6 2.3 dehydratase compare
AO353_07460 +0.6 1.9 DNA-binding protein compare
AO353_00120 +0.6 1.7 DNA-binding protein compare
AO353_25490 +0.6 1.8 transcriptional regulator compare
AO353_22360 +0.6 1.9 ABC transporter ATP-binding protein compare
AO353_03830 +0.6 1.3 antibiotic biosynthesis monooxygenase compare
AO353_19905 +0.6 2.9 ABC transporter compare
AO353_29075 +0.6 3.4 polyisoprenoid-binding protein compare
AO353_27435 +0.6 1.2 hypothetical protein compare
AO353_09875 +0.6 0.8 hypothetical protein compare
AO353_21770 +0.6 1.8 3-hydroxybutyrate dehydrogenase compare
AO353_11540 +0.6 3.5 ABC transporter permease compare
AO353_27220 +0.6 1.4 hypothetical protein compare
AO353_21480 +0.6 3.1 Cro/Cl family transcriptional regulator compare
AO353_01315 +0.6 2.6 TetR family transcriptional regulator compare
AO353_03135 +0.6 2.1 hypothetical protein compare
AO353_16635 +0.6 2.6 pyocin R2, holin compare
AO353_14085 +0.6 2.0 hypothetical protein compare
AO353_17975 +0.6 3.4 arabinose ABC transporter permease compare
AO353_03450 +0.6 1.9 heme oxygenase compare
AO353_09670 +0.6 2.5 hypothetical protein compare
AO353_09150 +0.6 1.7 cytochrome C2 compare
AO353_00260 +0.6 1.3 hypothetical protein compare
AO353_13830 +0.6 2.9 Flp pilus assembly protein CpaB compare
AO353_02280 +0.6 0.7 DNA mismatch repair protein MutS compare
AO353_04055 +0.6 1.3 methionine--tRNA ligase compare
AO353_24540 +0.6 2.5 hypothetical protein compare
AO353_15000 +0.6 1.4 glycerate dehydrogenase compare
AO353_01345 +0.6 4.3 aminodeoxychorismate lyase compare
AO353_09495 +0.6 2.2 hypothetical protein compare
AO353_26810 +0.6 2.0 (2Fe-2S)-binding protein compare
AO353_13395 +0.6 1.3 protein hupE compare
AO353_06480 +0.6 1.1 50S rRNA methyltransferase compare
AO353_04775 +0.6 1.9 hypothetical protein compare
AO353_00540 +0.6 1.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_06710 +0.6 1.1 riboflavin synthase subunit alpha compare
AO353_16860 +0.6 2.2 hypothetical protein compare
AO353_22280 +0.6 1.4 hypothetical protein compare
AO353_11545 +0.6 2.5 sulfate ABC transporter permease compare
AO353_09450 +0.6 2.0 type VI secretion protein compare
AO353_20695 +0.6 2.4 O-succinylhomoserine sulfhydrylase compare
AO353_22830 +0.6 2.3 cupin compare
AO353_17085 +0.6 1.5 hypothetical protein compare
AO353_09010 +0.6 1.5 hypothetical protein compare
AO353_10885 +0.6 2.4 metal ABC transporter permease compare
AO353_27550 +0.5 0.8 hypothetical protein compare
AO353_03455 +0.5 1.8 acyl-CoA transferase compare
AO353_25745 +0.5 1.8 LysR family transcriptional regulator compare
AO353_04410 +0.5 1.5 phosphoribosylglycinamide formyltransferase compare
AO353_01615 +0.5 1.8 pilus assembly protein PilA compare
AO353_04240 +0.5 1.1 chemotaxis protein CheW compare
AO353_07595 +0.5 2.1 transcriptional regulator compare
AO353_25965 +0.5 1.8 hypothetical protein compare
AO353_11735 +0.5 1.6 hypothetical protein compare
AO353_07510 +0.5 3.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_12940 +0.5 2.5 glycosyl transferase compare
AO353_14495 +0.5 3.6 acetolactate synthase 3 catalytic subunit compare
AO353_22025 +0.5 1.1 iron-sulfur cluster repair di-iron protein compare
AO353_26245 +0.5 1.9 phage head morphogenesis protein compare
AO353_13980 +0.5 2.1 DNA repair protein RadA compare
AO353_25330 +0.5 2.0 biotin-independent malonate decarboxylase subunit beta compare
AO353_27015 +0.5 2.4 6-O-methylguanine DNA methyltransferase compare
AO353_07465 +0.5 1.7 addiction module toxin RelE compare
AO353_23410 +0.5 0.6 hypothetical protein compare
AO353_07915 +0.5 2.0 hypothetical protein compare
AO353_01780 +0.5 3.4 heat-shock protein Hsp90 compare
AO353_17990 +0.5 2.1 MFS transporter compare
AO353_06015 +0.5 2.1 hypothetical protein compare
AO353_21015 +0.5 3.1 multidrug DMT transporter permease compare
AO353_13130 +0.5 1.5 N-acetylmuramoyl-L-alanine amidase compare
AO353_25575 +0.5 1.8 GNAT family acetyltransferase compare
AO353_27350 +0.5 1.3 hypothetical protein compare
AO353_20680 +0.5 1.6 cell division protein compare
AO353_10980 +0.5 3.0 chemotaxis protein CheY compare
AO353_14735 +0.5 1.8 hypothetical protein compare
AO353_09440 +0.5 1.0 type VI secretion protein compare
AO353_22020 +0.5 2.3 hypothetical protein compare
AO353_18755 +0.5 2.4 flagellar biosynthetic protein FliR compare
AO353_25305 +0.5 1.5 malonate transporter compare
AO353_22420 +0.5 1.8 histidine kinase compare
AO353_23350 +0.5 1.3 hypothetical protein compare
AO353_02710 +0.5 3.6 (p)ppGpp synthetase compare
AO353_00490 +0.5 0.8 PasA protein compare
AO353_07890 +0.5 3.1 alginate lyase compare
AO353_03120 +0.5 1.8 hypothetical protein compare
AO353_25195 +0.5 2.0 NAD(P)H:quinone oxidoreductase compare
AO353_04340 +0.5 1.4 hypothetical protein compare
AO353_11940 +0.5 1.3 hypothetical protein compare
AO353_27430 +0.5 1.4 hypothetical protein compare
AO353_02325 +0.5 1.9 OHCU decarboxylase compare
AO353_29095 +0.5 2.0 addiction module toxin RelE compare
AO353_16045 +0.5 3.6 glucose dehydrogenase compare
AO353_11845 +0.5 3.2 ADP-ribose diphosphatase compare
AO353_28565 +0.5 1.3 hypothetical protein compare
AO353_08555 +0.5 1.8 hypothetical protein compare
AO353_24190 +0.5 1.3 hypothetical protein compare
AO353_20415 +0.5 1.8 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas fluorescens FW300-N2E3

For stress 1-ethyl-3-methylimidazolium acetate across organisms