Experiment set4IT077 for Methanococcus maripaludis S2

Compare to:

Formate deepwell acetate and vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS06680 -4.0 -14.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS01175 -3.7 -9.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07005 -3.7 -1.7 4Fe-4S binding protein compare
MMP_RS06685 -3.5 -18.5 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06700 -3.4 -16.8 hypothetical protein compare
MMP_RS06345 -3.4 -16.8 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06715 -3.3 -21.9 cache domain-containing protein compare
MMP_RS01005 -3.2 -3.7 riboflavin synthase compare
MMP_RS06355 -3.2 -3.8 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06350 -3.2 -9.6 HesA/MoeB/ThiF family protein compare
MMP_RS06705 -3.2 -10.1 formate/nitrite transporter family protein compare
MMP_RS06720 -3.1 -16.5 response regulator transcription factor compare
MMP_RS07445 -3.1 -9.9 helix-turn-helix domain-containing protein compare
MMP_RS08745 -3.0 -10.3 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS00300 -3.0 -1.7 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03015 -3.0 -12.5 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -2.9 -9.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01020 -2.9 -2.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS02195 -2.8 -7.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS07630 -2.8 -2.9 ATP-binding cassette domain-containing protein compare
MMP_RS03600 -2.7 -4.2 triose-phosphate isomerase compare
MMP_RS08715 -2.6 -3.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03315 -2.6 -2.1 ferrous iron transport protein A compare
MMP_RS06895 -2.5 -3.1 selenocysteine-specific translation elongation factor compare
MMP_RS02280 -2.5 -2.1 DUF211 domain-containing protein compare
MMP_RS02355 -2.3 -7.2 30S ribosomal protein S27ae compare
MMP_RS07635 -2.3 -9.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07845 -2.3 -5.1 LL-diaminopimelate aminotransferase compare
MMP_RS04585 -2.3 -11.0 AIR synthase related protein compare
MMP_RS00305 -2.2 -2.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS04605 -2.2 -7.7 cobalt ECF transporter T component CbiQ compare
MMP_RS08460 -2.2 -3.3 proteasome-activating nucleotidase compare
MMP_RS01985 -2.2 -10.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS06925 -2.2 -3.7 ribonuclease VapC4 compare
MMP_RS06730 -2.2 -4.5 phosphopantothenate/pantothenate synthetase compare
MMP_RS08820 -2.1 -7.1 hypothetical protein compare
MMP_RS01500 -2.1 -4.3 CBS domain-containing protein compare
MMP_RS02340 -2.1 -2.9 DNA-directed RNA polymerase subunit E'' compare
MMP_RS08300 -2.1 -2.0 metal-sulfur cluster assembly factor compare
MMP_RS04615 -2.1 -7.7 PDGLE domain-containing protein compare
MMP_RS04620 -2.1 -13.7 cobalt transporter CbiM compare
MMP_RS07380 -2.1 -4.5 transcription elongation factor Spt5 compare
MMP_RS06975 -2.1 -3.5 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS00685 -2.1 -8.4 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01265 -2.1 -5.2 hypothetical protein compare
MMP_RS07525 -2.1 -10.6 4Fe-4S binding protein compare
MMP_RS04775 -2.0 -5.9 adenosylhomocysteinase compare
MMP_RS08645 -2.0 -10.6 UPF0179 family protein compare
MMP_RS01225 -2.0 -6.6 DUF5379 domain-containing protein compare
MMP_RS08635 -2.0 -3.0 UbiA family prenyltransferase compare
MMP_RS08720 -1.9 -3.7 4Fe-4S binding protein compare
MMP_RS00295 -1.9 -4.4 gamma carbonic anhydrase family protein compare
MMP_RS06475 -1.9 -6.5 FAD-dependent oxidoreductase compare
MMP_RS04780 -1.8 -5.0 ribonuclease P compare
MMP_RS04500 -1.8 -14.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS01220 -1.8 -10.0 hypothetical protein compare
MMP_RS08790 -1.8 -4.2 translation initiation factor IF-2 subunit alpha compare
MMP_RS03025 -1.8 -5.8 molybdenum cofactor guanylyltransferase compare
MMP_RS06295 -1.8 -8.7 methanogenesis marker 14 protein compare
MMP_RS01755 -1.8 -2.5 DUF2097 domain-containing protein compare
MMP_RS02875 -1.8 -10.4 chorismate pyruvate-lyase family protein compare
MMP_RS06120 -1.7 -4.0 UPF0147 family protein compare
MMP_RS01610 -1.7 -5.3 hypothetical protein compare
MMP_RS07645 -1.7 -8.8 aldehyde dehydrogenase family protein compare
MMP_RS01980 -1.7 -13.1 trimeric intracellular cation channel family protein compare
MMP_RS08105 -1.7 -10.6 6-carboxyhexanoate--CoA ligase compare
MMP_RS02135 -1.6 -5.9 DUF5612 domain-containing protein compare
MMP_RS03475 -1.6 -1.3 hypothetical protein compare
MMP_RS08100 -1.6 -11.1 8-amino-7-oxononanoate synthase compare
MMP_RS01545 -1.6 -2.3 CBS domain-containing protein compare
MMP_RS06885 -1.6 -3.7 50S ribosome-binding GTPase compare
MMP_RS00895 -1.6 -5.9 hypothetical protein compare
MMP_RS08095 -1.6 -10.0 dethiobiotin synthase compare
MMP_RS03640 -1.6 -5.2 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS05085 -1.6 -10.0 AAA family ATPase compare
MMP_RS07605 -1.6 -4.0 diadenylate cyclase compare
MMP_RS02240 -1.6 -5.2 methanogenesis marker 7 protein compare
MMP_RS05100 -1.6 -13.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS03035 -1.6 -4.8 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08210 -1.6 -4.4 phosphatidylglycerophosphatase A compare
MMP_RS05430 -1.6 -4.9 TIGR00288 family NYN domain-containing protein compare
MMP_RS01700 -1.6 -2.1 dihydroxy-acid dehydratase compare
MMP_RS09020 -1.5 -2.7 hypothetical protein compare
MMP_RS01380 -1.5 -5.7 PHP domain-containing protein compare
MMP_RS06370 -1.5 -6.6 biotin synthase BioB compare
MMP_RS06930 -1.5 -10.3 MBL fold metallo-hydrolase compare
MMP_RS04685 -1.5 -3.1 DUF126 domain-containing protein compare
MMP_RS03400 -1.5 -4.4 archease compare
MMP_RS06340 -1.5 -9.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS07575 -1.5 -3.8 RNA ligase partner protein compare
MMP_RS02010 -1.5 -7.3 PHP domain-containing protein compare
MMP_RS07600 -1.5 -4.2 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06270 -1.4 -7.2 TIGR00300 family protein compare
MMP_RS07685 -1.4 -6.9 TIGR01212 family radical SAM protein compare
MMP_RS06400 -1.4 -2.9 4Fe-4S binding protein compare
MMP_RS05920 -1.4 -1.2 50S ribosomal protein L37e compare
MMP_RS06105 -1.4 -8.3 hydrogenase maturation peptidase HycI compare
MMP_RS05055 -1.4 -11.4 DUF166 domain-containing protein compare
MMP_RS05090 -1.4 -10.4 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS06625 -1.4 -3.4 DNA primase compare
MMP_RS00320 -1.4 -3.5 class I SAM-dependent methyltransferase compare
MMP_RS05075 -1.4 -11.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05095 -1.4 -10.1 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS04890 -1.4 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02900 -1.4 -1.3 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS02235 -1.3 -8.2 CBS domain-containing protein compare
MMP_RS07195 -1.3 -8.8 M20 family metallo-hydrolase compare
MMP_RS07765 -1.3 -9.1 sodium:alanine symporter family protein compare
MMP_RS05070 -1.3 -8.0 4Fe-4S dicluster domain-containing protein compare
MMP_RS00115 -1.3 -9.1 radical SAM protein compare
MMP_RS02800 -1.3 -5.2 nucleotidyltransferase domain-containing protein compare
MMP_RS03580 -1.3 -4.8 signal recognition particle-docking protein FtsY compare
MMP_RS06230 -1.3 -3.1 helix-turn-helix domain-containing protein compare
MMP_RS05540 -1.3 -3.5 hypothetical protein compare
MMP_RS05765 -1.2 -6.0 M42 family metallopeptidase compare
MMP_RS00110 -1.2 -3.6 hypothetical protein compare
MMP_RS05875 -1.2 -2.6 hydroxyethylthiazole kinase compare
MMP_RS05080 -1.2 -9.8 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05060 -1.2 -9.6 AAA family ATPase compare
MMP_RS05265 -1.2 -2.4 2-isopropylmalate synthase compare
MMP_RS00290 -1.2 -8.0 hypothetical protein compare
MMP_RS05510 -1.2 -4.4 Rrf2 family transcriptional regulator compare
MMP_RS07580 -1.2 -3.1 DUF356 domain-containing protein compare
MMP_RS05065 -1.2 -7.0 CooT family nickel-binding protein compare
MMP_RS08650 -1.2 -3.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS08435 -1.2 -2.7 Era-like GTP-binding protein compare
MMP_RS05925 -1.2 -3.5 small nuclear ribonucleoprotein compare
MMP_RS06285 -1.2 -2.9 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS01325 -1.2 -3.6 dihydroneopterin aldolase family protein compare
MMP_RS06630 -1.2 -1.9 UPF0058 family protein compare
MMP_RS02345 -1.2 -3.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01725 -1.1 -4.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS01800 -1.1 -2.9 TIGR00303 family protein compare
MMP_RS07735 -1.1 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06865 -1.1 -2.5 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS05845 -1.1 -2.4 tRNA-intron lyase compare
MMP_RS08320 -1.1 -5.2 molybdopterin molybdotransferase MoeA compare
MMP_RS03435 -1.1 -2.4 ketol-acid reductoisomerase compare
MMP_RS05815 -1.1 -2.7 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS06980 -1.1 -6.1 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS00695 -1.0 -1.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02190 -1.0 -2.2 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS06020 -1.0 -3.8 archaeoflavoprotein AfpA compare
MMP_RS02165 -1.0 -6.6 tRNA-dihydrouridine synthase compare
MMP_RS06200 -1.0 -8.0 M24 family metallopeptidase compare
MMP_RS00130 -1.0 -2.0 nickel-responsive transcriptional regulator NikR compare
MMP_RS07545 -1.0 -1.6 HTH domain-containing protein compare
MMP_RS00120 -1.0 -4.2 LysR family transcriptional regulator compare
MMP_RS01250 -1.0 -4.9 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS00620 -1.0 -7.4 4Fe-4S binding protein compare
MMP_RS05345 -1.0 -6.3 hypothetical protein compare
MMP_RS07425 -1.0 -5.0 GTP-binding protein compare
MMP_RS08690 -1.0 -7.5 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS00475 -1.0 -6.9 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS00040 -1.0 -6.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06315 -1.0 -1.3 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07385 -1.0 -1.9 protein translocase SEC61 complex subunit gamma compare
MMP_RS01365 -0.9 -3.2 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03250 -0.9 -3.8 MJ1244 family protein compare
MMP_RS07730 -0.9 -2.5 pyruvate synthase subunit beta compare
MMP_RS03445 -0.9 -1.3 methanogenesis marker 17 protein compare
MMP_RS00515 -0.9 -1.3 DUF655 domain-containing protein compare
MMP_RS05850 -0.9 -2.6 Ldh family oxidoreductase compare
MMP_RS03095 -0.9 -5.6 diphthine synthase compare
MMP_RS03155 -0.9 -4.8 precorrin-6A reductase compare
MMP_RS05445 -0.9 -6.0 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS01830 -0.8 -2.0 tRNA-Val compare
MMP_RS07775 -0.8 -4.9 alanine dehydrogenase compare
MMP_RS07200 -0.8 -4.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS04870 -0.8 -4.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS07720 -0.8 -6.4 4Fe-4S binding protein compare
MMP_RS05550 -0.8 -0.8 cation:proton antiporter compare
MMP_RS00915 -0.8 -4.4 DUF116 domain-containing protein compare
MMP_RS05440 -0.8 -6.2 winged helix-turn-helix transcriptional regulator compare
MMP_RS01840 -0.8 -5.5 TIGR00289 family protein compare
MMP_RS00985 -0.8 -3.3 CDC48 family AAA ATPase compare
MMP_RS06215 -0.8 -2.2 30S ribosomal protein S6e compare
MMP_RS05545 -0.8 -4.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01720 -0.8 -1.4 replication factor C large subunit compare
MMP_RS07750 -0.7 -3.5 DUF357 domain-containing protein compare
MMP_RS00720 -0.7 -5.0 metal-dependent hydrolase compare
MMP_RS03305 -0.7 -5.0 winged helix-turn-helix domain-containing protein compare
MMP_RS08725 -0.7 -1.6 Ni/Fe hydrogenase subunit alpha compare
MMP_RS07700 -0.7 -4.8 DUF1188 domain-containing protein compare
MMP_RS02470 -0.7 -2.1 helix-turn-helix transcriptional regulator compare
MMP_RS07790 -0.7 -5.0 segregation/condensation protein A compare
MMP_RS01445 -0.7 -5.5 hypothetical protein compare
MMP_RS08445 -0.7 -2.5 DUF2099 family protein compare
MMP_RS03700 -0.7 -4.1 sodium:proton antiporter compare
MMP_RS01795 -0.7 -1.1 methanogenesis marker 6 protein compare
MMP_RS01475 -0.7 -4.9 phosphosulfolactate synthase compare
MMP_RS00050 -0.7 -4.2 AarF/UbiB family protein compare
MMP_RS05245 -0.7 -5.0 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS00310 -0.7 -4.5 CBS domain-containing protein compare
MMP_RS07535 -0.7 -4.3 4Fe-4S binding protein compare
MMP_RS07350 -0.7 -1.9 preprotein translocase subunit Sec61beta compare
MMP_RS02130 -0.7 -2.6 zinc metalloprotease HtpX compare
MMP_RS02885 -0.7 -5.4 molybdopterin biosynthesis protein compare
MMP_RS08070 -0.6 -4.9 DUF2096 domain-containing protein compare
MMP_RS05450 -0.6 -3.4 CoB--CoM heterodisulfide reductase subunit C compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 casamino acids across organisms