Experiment set4IT076 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with 1-ethyl-3-methylimidazolium acetate 20 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.6 -4.2 peroxidase compare
AO353_02005 -3.0 -2.8 hypothetical protein compare
AO353_12115 -2.8 -3.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_09000 -2.5 -5.4 argininosuccinate lyase compare
AO353_03795 -2.4 -4.8 fumarate hydratase compare
AO353_06720 -2.3 -2.6 NrdR family transcriptional regulator compare
AO353_11730 -2.3 -9.7 glutamate--cysteine ligase compare
AO353_07315 -2.2 -3.8 rRNA methyltransferase compare
AO353_13100 -2.2 -2.5 GTPase RsgA compare
AO353_00825 -2.1 -4.2 porin compare
AO353_23410 -2.1 -2.6 hypothetical protein compare
AO353_12500 -2.0 -2.3 shikimate kinase compare
AO353_20185 -2.0 -6.6 DNA-binding protein compare
AO353_00430 -1.9 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_18540 -1.9 -3.1 pseudouridine synthase compare
AO353_09250 -1.9 -3.3 exodeoxyribonuclease III compare
AO353_14220 -1.9 -1.7 ribosomal large subunit pseudouridine synthase D compare
AO353_10670 -1.7 -7.2 shikimate dehydrogenase compare
AO353_09240 -1.7 -3.0 acetylglutamate kinase compare
AO353_07075 -1.7 -5.4 elongation factor Tu compare
AO353_27695 -1.7 -7.1 isocitrate dehydrogenase compare
AO353_08110 -1.7 -5.4 glutathione synthetase compare
AO353_14740 -1.7 -3.7 GTP-binding protein compare
AO353_16940 -1.7 -5.8 deoxycytidine triphosphate deaminase compare
AO353_20175 -1.7 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_02250 -1.7 -3.0 chorismate synthase compare
AO353_04175 -1.6 -4.8 glycerol uptake facilitator GlpF compare
AO353_14940 -1.6 -3.2 malate:quinone oxidoreductase compare
AO353_04825 -1.6 -6.3 hypothetical protein compare
AO353_27720 -1.6 -4.6 cupin compare
AO353_08115 -1.5 -5.9 energy transducer TonB compare
AO353_06045 -1.5 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_03585 -1.5 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_12420 -1.5 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_14775 -1.5 -5.4 hypothetical protein compare
AO353_05420 -1.5 -2.4 peptide chain release factor 3 compare
AO353_08165 -1.5 -3.1 pyrroline-5-carboxylate reductase compare
AO353_04355 -1.4 -2.2 homoserine dehydrogenase compare
AO353_08685 -1.4 -6.9 N-acetylglutamate synthase compare
AO353_07355 -1.4 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09135 -1.4 -2.0 cytochrome C compare
AO353_15250 -1.4 -3.2 cytochrome B compare
AO353_06495 -1.4 -4.5 gamma-glutamyl phosphate reductase compare
AO353_13420 -1.3 -2.4 hypothetical protein compare
AO353_07155 -1.3 -5.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_00355 -1.3 -2.7 transcriptional regulator compare
AO353_10445 -1.3 -2.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_04500 -1.3 -2.5 DNA repair protein RecO compare
AO353_06040 -1.3 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_04565 -1.3 -4.5 nucleoid-associated protein compare
AO353_13225 -1.3 -3.0 50S ribosomal protein L9 compare
AO353_05690 -1.2 -3.1 SsrA-binding protein compare
AO353_04520 -1.2 -4.6 elongation factor 4 compare
AO353_24130 -1.2 -2.7 hypothetical protein compare
AO353_05550 -1.2 -5.2 pseudouridine synthase compare
AO353_05145 -1.2 -4.6 ABC transporter permease compare
AO353_04840 -1.2 -7.1 RND transporter compare
AO353_01410 -1.2 -2.8 ribonuclease E compare
AO353_20170 -1.2 -4.0 trigger factor compare
AO353_12880 -1.2 -2.4 ADP-heptose--LPS heptosyltransferase compare
AO353_03615 -1.2 -2.4 cold-shock protein compare
AO353_06050 -1.2 -5.2 exodeoxyribonuclease V subunit gamma compare
AO353_20410 -1.2 -1.8 hypothetical protein compare
AO353_00650 -1.2 -2.0 cytochrome biogenesis protein compare
AO353_14420 -1.2 -3.0 molecular chaperone DnaK compare
AO353_16805 -1.2 -4.5 recombinase RecA compare
AO353_10430 -1.2 -3.2 chromosome partitioning protein ParB compare
AO353_04830 -1.1 -4.2 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO353_04840, AO353_04825, and AO353_04835) (from data) compare
AO353_04835 -1.1 -7.2 fusaric acid resistance protein compare
AO353_13685 -1.1 -3.6 3-dehydroquinate dehydratase compare
AO353_12090 -1.1 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_28425 -1.1 -3.0 TetR family transcriptional regulator compare
AO353_09905 -1.1 -6.2 phosphate-binding protein compare
AO353_05140 -1.1 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_05125 -1.1 -3.7 BolA family transcriptional regulator compare
AO353_06850 -1.1 -3.3 MFS transporter compare
AO353_00635 -1.1 -2.5 hypothetical protein compare
AO353_03590 -1.1 -3.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_08600 -1.0 -3.1 TetR family transcriptional regulator compare
AO353_12105 -1.0 -4.7 peptidase S41 compare
AO353_11185 -1.0 -7.2 channel protein TolC compare
AO353_06455 -1.0 -2.2 D-alanyl-D-alanine carboxypeptidase compare
AO353_04365 -1.0 -3.9 recombinase XerD compare
AO353_05010 -1.0 -1.9 HopJ type III effector protein compare
AO353_14485 -1.0 -1.7 pseudouridine synthase compare
AO353_20865 -1.0 -1.4 cold-shock protein compare
AO353_14370 -1.0 -4.3 glucose-6-phosphate isomerase compare
AO353_21625 -1.0 -1.9 Fe/S biogenesis protein NfuA compare
AO353_13200 -1.0 -6.3 exoribonuclease R compare
AO353_02070 -1.0 -3.6 prephenate dehydratase compare
AO353_08980 -0.9 -2.5 heme biosynthesis operon protein HemX compare
AO353_27180 -0.9 -2.7 peptidase M48, Ste24p compare
AO353_05240 -0.9 -1.8 rod shape-determining protein MreD compare
AO353_15905 -0.9 -4.3 outer membrane protein assembly factor BamB compare
AO353_13925 -0.9 -1.9 XRE family transcriptional regulator compare
AO353_03580 -0.9 -2.4 ATP-dependent DNA helicase RuvB compare
AO353_18780 -0.9 -4.2 cobyrinic acid a,c-diamide synthase compare
AO353_04055 -0.9 -1.6 methionine--tRNA ligase compare
AO353_10930 -0.9 -5.1 DNA polymerase I compare
AO353_15900 -0.9 -1.7 GTP-binding protein compare
AO353_09260 -0.9 -4.4 ribonuclease PH compare
AO353_15730 -0.9 -2.3 hypothetical protein compare
AO353_22645 -0.9 -1.7 hypothetical protein compare
AO353_11180 -0.9 -8.0 large adhesive protein compare
AO353_11170 -0.9 -5.8 hypothetical protein compare
AO353_26090 -0.9 -1.6 hypothetical protein compare
AO353_13220 -0.9 -4.0 hypothetical protein compare
AO353_02220 -0.9 -1.1 hypothetical protein compare
AO353_19310 -0.9 -1.2 enoyl-CoA hydratase compare
AO353_04105 -0.9 -4.7 argininosuccinate synthase compare
AO353_11190 -0.9 -6.4 ABC transporter compare
AO353_07325 -0.9 -1.6 diadenosine tetraphosphatase compare
AO353_02020 -0.9 -3.0 hypothetical protein compare
AO353_03290 -0.9 -1.4 peptide deformylase compare
AO353_03710 -0.9 -1.5 formyltetrahydrofolate deformylase compare
AO353_28935 -0.9 -1.6 ATPase compare
AO353_25320 -0.9 -1.9 phosphoribosyl-dephospho-CoA transferase compare
AO353_18560 -0.9 -1.5 class I peptide chain release factor compare
AO353_12650 -0.9 -1.2 hypothetical protein compare
AO353_22025 -0.8 -1.5 iron-sulfur cluster repair di-iron protein compare
AO353_02235 -0.8 -3.5 acireductone dioxygenase compare
AO353_01995 -0.8 -6.1 hypothetical protein compare
AO353_26055 -0.8 -1.2 hypothetical protein compare
AO353_19360 -0.8 -1.6 peroxiredoxin compare
AO353_27010 -0.8 -2.1 alpha-ketoglutarate-dependent dioxygenase compare
AO353_29215 -0.8 -1.5 alpha/beta hydrolase compare
AO353_04190 -0.8 -1.6 glycerol-3-phosphate dehydrogenase compare
AO353_29145 -0.8 -2.5 HxlR family transcriptional regulator compare
AO353_01885 -0.8 -4.4 hypothetical protein compare
AO353_12130 -0.8 -2.8 preprotein translocase subunit SecB compare
AO353_15725 -0.8 -2.8 hypothetical protein compare
AO353_04155 -0.8 -5.5 ornithine carbamoyltransferase compare
AO353_01990 -0.8 -3.7 UDP-N-acetylglucosamine 2-epimerase compare
AO353_01970 -0.8 -5.2 hypothetical protein compare
AO353_16055 -0.8 -2.4 hypothetical protein compare
AO353_01595 -0.8 -1.3 Flp pilus assembly protein CpaB compare
AO353_00330 -0.8 -4.4 hypothetical protein compare
AO353_22150 -0.8 -1.6 iron transporter compare
AO353_04240 -0.8 -1.4 chemotaxis protein CheW compare
AO353_09050 -0.8 -2.6 recombinase XerC compare
AO353_22800 -0.8 -1.8 sulfite reductase compare
AO353_06585 -0.8 -4.0 hypothetical protein compare
AO353_02710 -0.8 -5.3 (p)ppGpp synthetase compare
AO353_00460 -0.8 -1.7 TetR family transcriptional regulator compare
AO353_17640 -0.8 -1.5 serine peptidase compare
AO353_20370 -0.8 -1.9 MerR family transcriptional regulator compare
AO353_00655 -0.8 -4.5 coproporphyrinogen III oxidase compare
AO353_11195 -0.8 -6.0 hemolysin secretion protein D compare
AO353_26570 -0.8 -2.9 Dihydropyrimidinase (EC 3.5.2.2) (from data) compare
AO353_10940 -0.8 -2.6 cytochrome compare
AO353_02300 -0.8 -1.8 MarR family transcriptional regulator compare
AO353_20800 -0.8 -1.2 hypothetical protein compare
AO353_17300 -0.8 -3.9 antibiotic transporter compare
AO353_01985 -0.7 -4.5 hypothetical protein compare
AO353_15460 -0.7 -3.7 cytochrome o ubiquinol oxidase subunit III compare
AO353_24340 -0.7 -1.2 TetR family transcriptional regulator compare
AO353_27135 -0.7 -2.3 hypothetical protein compare
AO353_27265 -0.7 -2.4 phage tail protein compare
AO353_23950 -0.7 -1.9 hypothetical protein compare
AO353_01975 -0.7 -3.8 glycosyl transferase compare
AO353_23165 -0.7 -1.9 cupin compare
AO353_16915 -0.7 -4.8 hypothetical protein compare
AO353_15885 -0.7 -2.9 Cro/Cl family transcriptional regulator compare
AO353_03670 -0.7 -2.6 ornithine acetyltransferase compare
AO353_27335 -0.7 -1.7 hypothetical protein compare
AO353_25700 -0.7 -1.2 hypothetical protein compare
AO353_12270 -0.7 -1.9 histidine ammonia-lyase compare
AO353_12935 -0.7 -2.2 glycosyltransferase compare
AO353_00900 -0.7 -4.0 2-methylisocitrate lyase compare
AO353_05150 -0.7 -2.6 ABC transporter ATP-binding protein compare
AO353_16415 -0.7 -4.8 beta-(1-3)-glucosyl transferase compare
AO353_24425 -0.7 -1.8 amino acid ABC transporter permease compare
AO353_08080 -0.7 -3.5 chemotaxis protein compare
AO353_14030 -0.7 -4.9 ABC transporter ATP-binding protein compare
AO353_10440 -0.7 -3.0 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_08535 -0.7 -4.6 hypothetical protein compare
AO353_18410 -0.7 -2.5 hypothetical protein compare
AO353_26045 -0.7 -1.2 hypothetical protein compare
AO353_05135 -0.7 -3.8 toluene tolerance protein compare
AO353_24600 -0.7 -1.8 hypothetical protein compare
AO353_09315 -0.7 -4.1 LysR family transcriptional regulator compare
AO353_17290 -0.7 -2.9 multidrug transporter compare
AO353_08470 -0.7 -2.5 RNA pyrophosphohydrolase compare
AO353_03760 -0.7 -1.8 pilus assembly protein PilZ compare
AO353_29020 -0.7 -2.5 amidohydrolase compare
AO353_21440 -0.7 -1.8 hypothetical protein compare
AO353_06750 -0.7 -2.3 methionine ABC transporter ATP-binding protein compare
AO353_01165 -0.7 -2.5 cytochrome C compare
AO353_14400 -0.7 -2.2 Fis family transcriptional regulator compare
AO353_17820 -0.7 -2.0 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO353_09915 -0.7 -3.8 long-chain acyl-CoA thioester hydrolase compare
AO353_25450 -0.6 -1.5 cyanate hydratase compare
AO353_28165 -0.6 -2.1 ABC transporter substrate-binding protein compare
AO353_15480 -0.6 -1.3 hypothetical protein compare
AO353_26900 -0.6 -2.6 glycerate kinase compare
AO353_12245 -0.6 -2.2 hypothetical protein compare
AO353_12565 -0.6 -1.5 type II secretion system protein GspH compare
AO353_22810 -0.6 -0.9 hypothetical protein compare
AO353_22620 -0.6 -2.6 hypothetical protein compare
AO353_02010 -0.6 -2.9 glycosyl transferase family 1 compare


Specific Phenotypes

For 6 genes in this experiment

For stress 1-ethyl-3-methylimidazolium acetate in Pseudomonas fluorescens FW300-N2E3

For stress 1-ethyl-3-methylimidazolium acetate across organisms