Experiment set4IT076 for Vibrio cholerae E7946 ATCC 55056

Compare to:

ICP1_phage_2.3_MOI_rep1

200 most important genes:

  gene name fitness t score description  
CSW01_18730 -5.2 -2.0 DUF406 domain-containing protein compare
CSW01_14080 -4.5 -1.0 DUF3283 domain-containing protein compare
CSW01_18150 -4.3 -1.0 transcription initiation factor TFIIIB compare
CSW01_00450 -4.2 -1.9 SCP2 domain-containing protein compare
CSW01_13305 -4.1 -2.3 shikimate kinase compare
CSW01_18350 -4.0 -1.8 cell division protein DedD compare
CSW01_03795 -4.0 -1.8 phosphate ABC transporter ATP-binding protein compare
CSW01_11555 -3.9 -3.8 riboflavin synthase compare
CSW01_01485 -3.9 -4.6 transcriptional regulator compare
CSW01_13285 -3.8 -2.6 ribulose-phosphate 3-epimerase compare
CSW01_12365 -3.8 -2.6 inorganic phosphate transporter compare
CSW01_11560 -3.6 -4.9 riboflavin biosynthesis protein RibD compare
CSW01_14910 -3.5 -1.1 cold-shock protein compare
CSW01_12005 -3.2 -4.4 aerobic respiration two-component sensor histidine kinase ArcB compare
CSW01_06380 -3.2 -2.2 GTP cyclohydrolase II compare
CSW01_13420 -3.1 -2.9 elongation factor P--(R)-beta-lysine ligase compare
CSW01_09525 -3.1 -1.7 DNA translocase FtsK compare
CSW01_04820 -3.1 -10.3 serine hydroxymethyltransferase compare
CSW01_05265 -3.0 -1.6 methionine--tRNA ligase compare
CSW01_10270 -2.9 -4.2 cytochrome c-type biogenesis protein CcmE compare
CSW01_05370 -2.9 -2.0 YbaB/EbfC family nucleoid-associated protein compare
CSW01_17595 -2.7 -1.0 TIGR02808 family protein compare
CSW01_10265 -2.6 -6.1 c-type cytochrome biogenesis protein CcmF compare
CSW01_10290 -2.6 -4.1 cytochrome c biogenesis ATP-binding export protein CcmA compare
CSW01_12885 -2.6 -9.6 fructose 1,6-bisphosphatase compare
CSW01_03325 -2.5 -3.8 porin compare
CSW01_09720 -2.5 -1.9 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
CSW01_16690 -2.5 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
CSW01_13445 -2.5 -2.4 elongation factor P compare
CSW01_05575 -2.4 -4.0 phosphate acetyltransferase compare
CSW01_03210 -2.4 -10.7 iron ABC transporter permease compare
CSW01_01490 -2.4 -4.1 Fis family transcriptional regulator compare
CSW01_03215 -2.3 -11.4 ABC transporter ATP-binding protein compare
CSW01_00170 -2.3 -5.1 thiol:disulfide interchange protein DsbA compare
CSW01_03980 -2.3 -7.3 IMP dehydrogenase compare
CSW01_17275 -2.3 -0.9 large conductance mechanosensitive channel protein MscL compare
CSW01_13805 -2.2 -6.2 Hsp33 family molecular chaperone HslO compare
CSW01_03410 -2.2 -2.7 polyribonucleotide nucleotidyltransferase compare
CSW01_09250 -2.2 -2.1 crossover junction endodeoxyribonuclease RuvC compare
CSW01_00560 -2.1 -5.0 DNA polymerase I compare
CSW01_05825 -2.1 -4.7 transcriptional regulator HexR compare
CSW01_01875 -2.1 -2.8 hypothetical protein compare
CSW01_12680 -2.1 -6.9 cytosol aminopeptidase compare
CSW01_10260 -2.1 -2.5 thiol:disulfide interchange protein DsbE compare
CSW01_01125 -2.1 -7.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
CSW01_18635 -2.0 -3.7 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
CSW01_11730 -2.0 -3.1 2-dehydropantoate 2-reductase compare
CSW01_11195 -1.9 -3.0 flagellar L-ring protein compare
CSW01_12130 -1.9 -1.7 DUF721 domain-containing protein compare
CSW01_10255 -1.9 -1.4 cytochrome c-type biogenesis protein CcmH compare
CSW01_00095 -1.9 -2.4 hypothetical protein compare
CSW01_18525 -1.9 -1.6 integrase compare
CSW01_12320 -1.9 -2.9 3',5'-cyclic-AMP phosphodiesterase compare
CSW01_03205 -1.9 -8.4 iron ABC transporter substrate-binding protein compare
CSW01_13635 -1.8 -7.8 thiol:disulfide interchange protein DsbD compare
CSW01_11785 -1.8 -3.0 exonuclease V subunit gamma compare
CSW01_02390 -1.8 -1.4 tRNA-Thr compare
CSW01_16835 -1.8 -3.8 catabolite repressor/activator compare
CSW01_03695 -1.8 -5.7 ribosomal large subunit pseudouridine synthase D compare
CSW01_15705 -1.8 -1.9 DUF3265 domain-containing protein compare
CSW01_09990 -1.7 -1.3 hypothetical protein compare
CSW01_11920 -1.7 -5.5 NupC/NupG family nucleoside CNT transporter compare
CSW01_11670 -1.7 -1.8 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
CSW01_02430 -1.7 -2.6 non-canonical purine NTP pyrophosphatase compare
CSW01_05580 -1.7 -5.1 acetate kinase compare
CSW01_05065 -1.7 -4.6 N-acetylglucosamine repressor compare
CSW01_06225 -1.7 -2.6 cytidine deaminase compare
CSW01_11565 -1.7 -1.1 transcriptional regulator NrdR compare
CSW01_00500 -1.6 -10.7 glycerol-3-phosphate 1-O-acyltransferase compare
CSW01_05275 -1.6 -1.1 hypothetical protein compare
CSW01_00015 -1.6 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
CSW01_02875 -1.6 -3.4 DNA recombination/repair protein RecA compare
CSW01_03785 -1.6 -3.0 phosphate ABC transporter permease compare
CSW01_08565 -1.6 -1.1 hypothetical protein compare
CSW01_02490 -1.6 -5.2 glutathione synthetase compare
CSW01_14245 -1.6 -2.7 hypothetical protein compare
CSW01_14335 -1.5 -2.3 ATP-dependent helicase compare
CSW01_05925 -1.5 -3.4 tryptophan synthase subunit alpha compare
CSW01_10875 -1.5 -5.3 redox-regulated ATPase YchF compare
CSW01_17495 -1.5 -4.6 glycerol-3-phosphate dehydrogenase compare
CSW01_13810 -1.5 -4.8 phosphoenolpyruvate carboxykinase (ATP) compare
CSW01_17750 -1.5 -0.9 cytochrome B compare
CSW01_00470 -1.5 -2.9 twin-arginine translocase subunit TatC compare
CSW01_02450 -1.5 -4.8 pyrroline-5-carboxylate reductase compare
CSW01_05480 -1.5 -3.0 hypothetical protein compare
CSW01_03950 -1.4 -2.5 hypothetical protein compare
CSW01_10565 -1.4 -2.2 hypothetical protein compare
CSW01_18195 -1.4 -3.4 DUF3024 domain-containing protein compare
CSW01_14780 -1.4 -1.3 cation:proton antiporter compare
CSW01_07750 -1.4 -0.7 hypothetical protein compare
CSW01_08705 -1.4 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
CSW01_12200 -1.4 -1.7 ribosomal RNA small subunit methyltransferase H compare
CSW01_10605 -1.4 -1.5 flagellar motor switch protein FliN compare
CSW01_05730 -1.4 -7.2 inosine/guanosine kinase compare
CSW01_12735 -1.4 -3.5 RidA family protein compare
CSW01_12820 -1.3 -1.3 ribosome hibernation promoting factor compare
CSW01_13670 -1.3 -0.9 DNA-directed RNA polymerase subunit omega compare
CSW01_09280 -1.3 -3.1 DUF2057 domain-containing protein compare
CSW01_02970 -1.3 -4.5 glutamate--cysteine ligase compare
CSW01_13220 -1.3 -1.4 hypothetical protein compare
CSW01_14625 -1.3 -1.3 hypothetical protein compare
CSW01_16590 -1.3 -0.8 N-acetyltransferase compare
CSW01_01140 -1.3 -1.1 lipid A biosynthesis lauroyl acyltransferase compare
CSW01_11215 -1.3 -3.0 flagellar hook assembly protein FlgD compare
CSW01_09245 -1.3 -3.6 Holliday junction branch migration protein RuvA compare
CSW01_10280 -1.3 -2.2 heme exporter protein C compare
CSW01_11800 -1.2 -1.7 hydroxyacid dehydrogenase compare
CSW01_07475 -1.2 -1.0 glutaredoxin family protein compare
CSW01_09035 -1.2 -2.2 IclR family transcriptional regulator compare
CSW01_16325 -1.2 -0.8 hypothetical protein compare
CSW01_10440 -1.2 -1.4 succinate dehydrogenase flavoprotein subunit compare
CSW01_00460 -1.2 -2.0 twin-arginine translocase subunit TatA compare
CSW01_11780 -1.2 -2.9 exodeoxyribonuclease V subunit beta compare
CSW01_15680 -1.2 -1.1 DUF3265 domain-containing protein compare
CSW01_16215 -1.2 -1.0 DUF3709 domain-containing protein compare
CSW01_18335 -1.2 -2.5 sugar O-acetyltransferase compare
CSW01_09815 -1.2 -1.6 TetR/AcrR family transcriptional regulator compare
CSW01_00025 -1.2 -0.7 membrane protein insertion efficiency factor YidD compare
CSW01_14085 -1.1 -1.9 transcriptional regulator compare
CSW01_11205 -1.1 -3.0 flagellar basal-body rod protein FlgF compare
CSW01_02530 -1.1 -3.3 D-erythrose-4-phosphate dehydrogenase compare
CSW01_00080 -1.1 -1.1 hypothetical protein compare
CSW01_18865 -1.1 -2.7 spermidine acetyltransferase compare
CSW01_16285 -1.1 -1.1 acetyltransferase compare
CSW01_09045 -1.1 -2.2 hypothetical protein compare
CSW01_12610 -1.1 -1.8 3-isopropylmalate dehydratase small subunit compare
CSW01_13450 -1.1 -1.8 EF-P beta-lysylation protein EpmB compare
CSW01_04285 -1.1 -1.7 toxin coregulated pilus biosynthesis protein R compare
CSW01_06535 -1.0 -1.2 hypothetical protein compare
CSW01_09240 -1.0 -2.4 Holliday junction branch migration DNA helicase RuvB compare
CSW01_10145 -1.0 -2.1 ribonuclease E compare
CSW01_10420 -1.0 -3.1 succinyl-CoA ligase subunit beta compare
CSW01_11960 -1.0 -2.6 autonomous glycyl radical cofactor GrcA compare
CSW01_02890 -1.0 -3.4 aspartate kinase compare
CSW01_18835 -1.0 -2.0 acyl-CoA thioesterase compare
CSW01_07210 -1.0 -1.5 hypothetical protein compare
CSW01_04535 -1.0 -2.3 N-acetyltransferase compare
CSW01_01820 -1.0 -3.6 N-acetylmuramoyl-L-alanine amidase compare
CSW01_11225 -1.0 -3.5 flagellar basal body rod protein FlgB compare
CSW01_00675 -1.0 -0.7 hypothetical protein compare
CSW01_11250 -1.0 -1.8 molecular chaperone compare
CSW01_18495 -1.0 -1.0 cytochrome bd-I oxidase subunit CydX compare
CSW01_14455 -1.0 -1.0 hypothetical protein compare
CSW01_18185 -1.0 -2.3 DEAD/DEAH box family ATP-dependent RNA helicase compare
CSW01_06005 -1.0 -2.9 vancomycin high temperature exclusion protein compare
CSW01_17255 -1.0 -1.7 nucleoside diphosphate kinase regulator compare
CSW01_17230 -1.0 -2.8 putative 2-aminoethylphosphonate ABC transporter ATP-binding protein compare
CSW01_09140 -1.0 -2.3 PTS fructose transporter subunit IIB compare
CSW01_17630 -1.0 -2.7 Fe(3+) ions import ATP-binding protein FbpC compare
CSW01_09420 -1.0 -1.0 DUF2062 domain-containing protein compare
CSW01_08515 -1.0 -1.1 trimethylamine N-oxide reductase system protein TorE compare
CSW01_13515 -0.9 -2.0 HslU--HslV peptidase proteolytic subunit compare
CSW01_16785 -0.9 -1.2 hypothetical protein compare
CSW01_10630 -0.9 -2.1 flagella biosynthesis chaperone FliJ compare
CSW01_03790 -0.9 -1.8 phosphate ABC transporter, permease protein PstA compare
CSW01_10600 -0.9 -1.1 flagellar biosynthetic protein FliO compare
CSW01_19435 -0.9 -1.1 hypothetical protein compare
CSW01_15810 -0.9 -1.0 hypothetical protein compare
CSW01_15410 -0.9 -1.9 hypothetical protein compare
CSW01_06935 -0.9 -1.5 exonuclease compare
CSW01_10415 -0.9 -2.2 succinate--CoA ligase subunit alpha compare
CSW01_08660 -0.9 -2.9 PurR family transcriptional regulator compare
CSW01_13155 -0.9 -4.7 ribonuclease R compare
CSW01_12250 -0.9 -3.4 site-specific tyrosine recombinase XerD compare
CSW01_17525 -0.9 -0.7 hypothetical protein compare
CSW01_08620 -0.9 -5.3 chromosome partition protein MukB compare
CSW01_02455 -0.9 -2.6 YggS family pyridoxal phosphate enzyme compare
CSW01_03030 -0.9 -3.8 cell division protein ZapE compare
CSW01_16570 -0.9 -1.1 N-acetyltransferase compare
CSW01_17745 -0.9 -1.3 diacylglycerol kinase compare
CSW01_16205 -0.9 -1.3 DUF3465 domain-containing protein compare
CSW01_19620 -0.9 -2.4 delta-VPH compare
CSW01_18310 -0.9 -0.9 hypothetical protein compare
CSW01_06610 -0.9 -1.7 30S ribosomal protein S5 alanine N-acetyltransferase compare
CSW01_05320 -0.9 -1.7 hypothetical protein compare
CSW01_07870 -0.9 -2.3 ABC transporter ATP-binding protein compare
CSW01_18705 -0.9 -2.2 biopolymer transporter exbD1 compare
CSW01_07535 -0.9 -2.2 paraquat-inducible protein A compare
CSW01_02205 -0.9 -3.2 ribonuclease E/G compare
CSW01_06920 -0.9 -0.8 DUF2760 domain-containing protein compare
CSW01_09090 -0.9 -2.0 NYN domain-containing protein compare
CSW01_06395 -0.9 -3.8 iron-regulated protein A compare
CSW01_10995 -0.9 -1.9 hypothetical protein compare
CSW01_10340 -0.9 -1.5 MinD/ParA family protein compare
CSW01_00065 -0.9 -3.4 DNA replication and repair protein RecF compare
CSW01_14055 -0.8 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
CSW01_05130 -0.8 -2.3 flagellar protein MotY compare
CSW01_07085 -0.8 -2.2 carboxypeptidase M32 compare
CSW01_14680 -0.8 -0.5 aminotransferase compare
CSW01_06020 -0.8 -1.2 transporter compare
CSW01_01980 -0.8 -2.6 transcriptional regulator Zur compare
CSW01_05670 -0.8 -2.7 protease HtpX compare
CSW01_07600 -0.8 -2.1 transcriptional initiation protein Tat compare
CSW01_08390 -0.8 -1.9 hypothetical protein compare
CSW01_16035 -0.8 -1.7 DUF645 domain-containing protein compare
CSW01_00650 -0.8 -2.8 tyrosine recombinase XerC compare
CSW01_11210 -0.8 -2.9 flagellar hook protein FlgE compare
CSW01_09465 -0.8 -2.4 NAD(P)/FAD-dependent oxidoreductase compare
CSW01_05220 -0.8 -2.7 cyclic pyranopterin monophosphate synthase MoaC compare
CSW01_17070 -0.8 -1.4 YoaH family protein compare


Specific Phenotypes

None in this experiment

For Vibrio cholerae E7946 ATCC 55056 in phage experiments

For phage ICP1_phage across organisms